ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17o05 |
|---|---|
| Clone Library Name | barley_pub |
>SAS6_CHICK (Q5ZMV2) Spindle assembly abnormal protein 6 homolog| Length = 640 Score = 33.1 bits (74), Expect = 0.84 Identities = 29/95 (30%), Positives = 43/95 (45%) Frame = -2 Query: 678 ILLRMSMSTAPRPSEHPLKFIRSYNTRLTYLDKVKTHSDDLIKQLKCLDPATQQKEAQCL 499 + LR +T KFI TR+ L++ D L+ + K + ATQ+ Q + Sbjct: 302 VSLRRENTTLDAECHEKEKFINQLQTRVAVLEQEIKDKDQLVIRTKEVLDATQE---QKV 358 Query: 498 ALEAGRYKKAALEDAEKFEHFIPNQFSEWLKGNKI 394 LE KK + EK E I + +E LK N+I Sbjct: 359 ILEENTEKKQS--HIEKLETTIKSLSAELLKANEI 391
>CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog| Length = 256 Score = 33.1 bits (74), Expect = 0.84 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Frame = -2 Query: 357 PGLRGAFKTLDDTQKLKAYDNIIAGSGHGNPMVTYSFE----DLGKVEIDSGT--SKVNI 196 PG+ G K L T ++ D + G+GH P FE L + + G S+ Sbjct: 103 PGMHGMLKVLYGTVRISCMDKLDTGAGHRRPPPEQQFEPPLQPLEREAVRPGVLRSRAEY 162 Query: 195 TDGLSGCRVAPMTDGL 148 T+ C + P D L Sbjct: 163 TEASGPCVLTPHRDNL 178
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/58 (34%), Positives = 29/58 (50%) Frame = -2 Query: 597 LTYLDKVKTHSDDLIKQLKCLDPATQQKEAQCLALEAGRYKKAALEDAEKFEHFIPNQ 424 L+YL K+K +++D ++Q KE Q LEA +K A E E F PN+ Sbjct: 1348 LSYLQKLKNNNNDQLRQ----------KEVQAWRLEAEGFKPATEEQLEAFLDTAPNK 1395
>UBP9_YEAST (P39967) Ubiquitin carboxyl-terminal hydrolase 9 (EC 3.1.2.15)| (Ubiquitin thioesterase 9) (Ubiquitin-specific-processing protease 9) (Deubiquitinating enzyme 9) Length = 754 Score = 31.6 bits (70), Expect = 2.4 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Frame = -2 Query: 462 EDAEKFEHFIPNQFSEWLKGN--KIKFQDLVADDTAKPGLRGAFK-TLDDTQKLKAYDNI 292 +DA +F +F+ N FSE+++ N +++F D++ + FK TL + K DNI Sbjct: 434 QDAHEFLNFLLNDFSEYIQRNNPRMRFGPQKTDNSNDNFITDLFKGTLTNRIKCLTCDNI 493 Query: 291 IAGSGHGNPMVTYSFEDLGKVEID 220 + P + + E G E D Sbjct: 494 ---TSRDEPFLDFPIEVQGDEETD 514
>PUR4_XANAC (Q8PGR7) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1348 Score = 31.2 bits (69), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 375 ADDTAKPGLRGAFKTLDDTQKLKAYDNIIAGSGHGNPMVTY 253 ADDTA P G LDD Q+L+++ +I + ++ Y Sbjct: 899 ADDTALPAFGGEVPDLDDAQRLRSFFELIRDARDSGLLLAY 939
>CSP_DROME (Q03751) Cysteine string protein| Length = 249 Score = 25.0 bits (53), Expect(2) = 3.5 Identities = 10/34 (29%), Positives = 14/34 (41%) Frame = -3 Query: 146 NSLALLRTTTQTYELIIPECYYSTTAAIFCCCCC 45 N A T+ + ++ C T CCCCC Sbjct: 96 NVNAYFVVTSPAVKAVVICCAVITGCCCCCCCCC 129 Score = 24.6 bits (52), Expect(2) = 3.5 Identities = 6/7 (85%), Positives = 7/7 (100%) Frame = -3 Query: 59 CCCCCHF 39 CCCCC+F Sbjct: 127 CCCCCNF 133
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 30.8 bits (68), Expect = 4.2 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -2 Query: 687 PSKILLRMSMSTAPRPSEHPLKFIRSYNTRLTYLDKVKTHSDDLIKQLKCLDPAT 523 PS ++ +S +T P P+ P K + +TR+TY+ H+ L C T Sbjct: 972 PSGLVPPLSPATMPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTSSACSQTGT 1026
>PUR4_XANCP (Q8PCQ7) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1348 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 375 ADDTAKPGLRGAFKTLDDTQKLKAYDNIIAGSGHGNPMVTY 253 ADD+A P G LDD Q+L+ + +I + G ++ Y Sbjct: 899 ADDSALPAFGGETPDLDDPQRLRQFFELIRDAREGGLLLAY 939
>DNJ5G_HUMAN (Q8N7S2) DnaJ homolog subfamily C member 5G (Gamma cysteine string| protein) (Gamma-CSP) Length = 189 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%) Frame = -3 Query: 110 YELIIPECYYST--------TAAIFCCCCCHFVHSLNNTP 15 Y I+ C++ T T FCCCCC +L P Sbjct: 115 YYFILNSCWFKTLVILCTLLTCCCFCCCCCFCCGALKPPP 154
>TXK_HUMAN (P42681) Tyrosine-protein kinase TXK (EC 2.7.10.2)| Length = 527 Score = 30.0 bits (66), Expect = 7.1 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -3 Query: 83 YSTTAAIFCCCCC 45 Y+T ++FCCCCC Sbjct: 6 YNTIQSVFCCCCC 18
>P4HA1_PONPY (Q5RAG8) Prolyl 4-hydroxylase alpha-1 subunit precursor (EC| 1.14.11.2) (4-PH alpha-1) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-1 subunit) Length = 534 Score = 30.0 bits (66), Expect = 7.1 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = -2 Query: 522 QQKEAQCLALEAGRYKKAALEDAEKFEHFIPNQFSEWLKGNKIKFQDLVAD-------DT 364 +QK+ C + R K L A+ Q EW K I+F D+++D D Sbjct: 304 RQKKLFCRYHDGNRNPKFILAPAK--------QEDEWDKPRIIRFHDIISDAEIEIVKDL 355 Query: 363 AKPGLRGAFKTLDDTQKLKAYDNIIAG----SGHGNPMVT 256 AKP LR A + T L+ I+ SG+ NP+V+ Sbjct: 356 AKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVS 395
>P4HA1_HUMAN (P13674) Prolyl 4-hydroxylase alpha-1 subunit precursor (EC| 1.14.11.2) (4-PH alpha-1) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-1 subunit) Length = 534 Score = 30.0 bits (66), Expect = 7.1 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = -2 Query: 522 QQKEAQCLALEAGRYKKAALEDAEKFEHFIPNQFSEWLKGNKIKFQDLVAD-------DT 364 +QK+ C + R K L A+ Q EW K I+F D+++D D Sbjct: 304 RQKKLFCRYHDGNRNPKFILAPAK--------QEDEWDKPRIIRFHDIISDAEIEIVKDL 355 Query: 363 AKPGLRGAFKTLDDTQKLKAYDNIIAG----SGHGNPMVT 256 AKP LR A + T L+ I+ SG+ NP+V+ Sbjct: 356 AKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVS 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,944,978 Number of Sequences: 219361 Number of extensions: 1938545 Number of successful extensions: 5288 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5265 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
