ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467006.1| Oryza sativa (japonica cultivar-group), mRNA 287 2e-74
2dbj|AK068423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 2e-74
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 172 7e-40
4dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 172 7e-40
5gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, comp... 42 1.8
6emb|Z49066.1|CEC04H4 Caenorhabditis elegans Cosmid C04H4, comple... 42 1.8
7gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, co... 42 1.8
8gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complet... 42 1.8
9gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complet... 42 1.8
10gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.1
11gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 7.1
12gb|AC131208.2| Homo sapiens 3 BAC RP11-698P15 (Roswell Park Canc... 40 7.1
13gb|AC084335.6| Homo sapiens chromosome 18, clone RP11-1119E12, c... 40 7.1
14gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosom... 40 7.1
15gb|AC011200.9|AC011200 Homo sapiens chromosome 8 clone RP11-71N3... 40 7.1
16gb|AC131042.6| Homo sapiens chromosome 8, clone CTD-2607C6, comp... 40 7.1
17gb|AC115848.10| Mus musculus chromosome 3, clone RP24-248L23, co... 40 7.1
18emb|AL935049.19| Zebrafish DNA sequence from clone CH211-185K2 i... 40 7.1
19emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in ... 40 7.1
20emb|AJ233662.1|BTA233662 Bos taurus endogenous retroviral sequen... 40 7.1 
>ref|XM_467006.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1082

 Score =  287 bits (145), Expect = 2e-74
 Identities = 271/313 (86%)
 Strand = Plus / Minus

                                                                       
Query: 215 tcacacaaaccactagcttcatcacaaaaaccatcacggtccagaagtttaggtggcggg 274
           ||||||| |||| | |||||||| || ||||||||||||||||||||||| ||||| || 
Sbjct: 845 tcacacataccagttgcttcatcgcagaaaccatcacggtccagaagtttgggtggtgga 786

                                                                       
Query: 275 gcacttaaaagaggggatgaagggctcccatatgcattccggcgactgttaccacaccca 334
           ||||| ||||||||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct: 785 gcactcaaaagaggggaggaagggctcccatatgcatttcggcgactgttgccgcatcca 726

                                                                       
Query: 335 aggctcttccgggtgctgactccagttataggattggtcccgcttgcatatttgcacaaa 394
           ||||| ||||| |||||||| || |||| ||| || || ||  |||||||||||||||||
Sbjct: 725 aggcttttccgtgtgctgacccctgttaaagggtttgttccatttgcatatttgcacaaa 666

                                                                       
Query: 395 gccagtttctgtggtaggtcaataacagcatcgctgaagtcagcaccttcaatggttgct 454
           ||| |||||||||  ||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct: 665 gcctgtttctgtgtcaggtcaataacagcatcactgaagtctgcaccttcaatgattgct 606

                                                                       
Query: 455 ccaccgagatcactgcgtgtaaggacagtccgcgaaagcacagcatttgtgagattagct 514
           ||||| ||||| || || |||||||| | |||   ||||||||||||||| || ||||||
Sbjct: 605 ccaccaagatcgctacgcgtaaggactgaccgtacaagcacagcatttgtaaggttagct 546

                        
Query: 515 tcattgagaacca 527
           |||||||| ||||
Sbjct: 545 tcattgagcacca 533
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>dbj|AK068423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153L01, full
           insert sequence
          Length = 1081

 Score =  287 bits (145), Expect = 2e-74
 Identities = 271/313 (86%)
 Strand = Plus / Minus

                                                                       
Query: 215 tcacacaaaccactagcttcatcacaaaaaccatcacggtccagaagtttaggtggcggg 274
           ||||||| |||| | |||||||| || ||||||||||||||||||||||| ||||| || 
Sbjct: 844 tcacacataccagttgcttcatcgcagaaaccatcacggtccagaagtttgggtggtgga 785

                                                                       
Query: 275 gcacttaaaagaggggatgaagggctcccatatgcattccggcgactgttaccacaccca 334
           ||||| ||||||||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct: 784 gcactcaaaagaggggaggaagggctcccatatgcatttcggcgactgttgccgcatcca 725

                                                                       
Query: 335 aggctcttccgggtgctgactccagttataggattggtcccgcttgcatatttgcacaaa 394
           ||||| ||||| |||||||| || |||| ||| || || ||  |||||||||||||||||
Sbjct: 724 aggcttttccgtgtgctgacccctgttaaagggtttgttccatttgcatatttgcacaaa 665

                                                                       
Query: 395 gccagtttctgtggtaggtcaataacagcatcgctgaagtcagcaccttcaatggttgct 454
           ||| |||||||||  ||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct: 664 gcctgtttctgtgtcaggtcaataacagcatcactgaagtctgcaccttcaatgattgct 605

                                                                       
Query: 455 ccaccgagatcactgcgtgtaaggacagtccgcgaaagcacagcatttgtgagattagct 514
           ||||| ||||| || || |||||||| | |||   ||||||||||||||| || ||||||
Sbjct: 604 ccaccaagatcgctacgcgtaaggactgaccgtacaagcacagcatttgtaaggttagct 545

                        
Query: 515 tcattgagaacca 527
           |||||||| ||||
Sbjct: 544 tcattgagcacca 532
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  172 bits (87), Expect = 7e-40
 Identities = 159/183 (86%)
 Strand = Plus / Minus

                                                                            
Query: 215      tcacacaaaccactagcttcatcacaaaaaccatcacggtccagaagtttaggtggcggg 274
                ||||||| |||| | |||||||| || ||||||||||||||||||||||| ||||| || 
Sbjct: 25877284 tcacacataccagttgcttcatcgcagaaaccatcacggtccagaagtttgggtggtgga 25877225

                                                                            
Query: 275      gcacttaaaagaggggatgaagggctcccatatgcattccggcgactgttaccacaccca 334
                ||||| ||||||||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct: 25877224 gcactcaaaagaggggaggaagggctcccatatgcatttcggcgactgttgccgcatcca 25877165

                                                                            
Query: 335      aggctcttccgggtgctgactccagttataggattggtcccgcttgcatatttgcacaaa 394
                ||||| ||||| |||||||| || |||| ||| || || ||  |||||||||||||||||
Sbjct: 25877164 aggcttttccgtgtgctgacccctgttaaagggtttgttccatttgcatatttgcacaaa 25877105

                   
Query: 395      gcc 397
                |||
Sbjct: 25877104 gcc 25877102



 Score =  119 bits (60), Expect = 1e-23
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                            
Query: 399      gtttctgtggtaggtcaataacagcatcgctgaagtcagcaccttcaatggttgctccac 458
                |||||||||  ||||||||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 25876436 gtttctgtgtcaggtcaataacagcatcactgaagtctgcaccttcaatgattgctccac 25876377

                                                                            
Query: 459      cgagatcactgcgtgtaaggacagtccgcgaaagcacagcatttgtgagattagcttcat 518
                | ||||| || || |||||||| | |||   ||||||||||||||| || ||||||||||
Sbjct: 25876376 caagatcgctacgcgtaaggactgaccgtacaagcacagcatttgtaaggttagcttcat 25876317

                    
Query: 519      tgag 522
                ||||
Sbjct: 25876316 tgag 25876313
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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_H11
          Length = 143314

 Score =  172 bits (87), Expect = 7e-40
 Identities = 159/183 (86%)
 Strand = Plus / Minus

                                                                         
Query: 215   tcacacaaaccactagcttcatcacaaaaaccatcacggtccagaagtttaggtggcggg 274
             ||||||| |||| | |||||||| || ||||||||||||||||||||||| ||||| || 
Sbjct: 28625 tcacacataccagttgcttcatcgcagaaaccatcacggtccagaagtttgggtggtgga 28566

                                                                         
Query: 275   gcacttaaaagaggggatgaagggctcccatatgcattccggcgactgttaccacaccca 334
             ||||| ||||||||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct: 28565 gcactcaaaagaggggaggaagggctcccatatgcatttcggcgactgttgccgcatcca 28506

                                                                         
Query: 335   aggctcttccgggtgctgactccagttataggattggtcccgcttgcatatttgcacaaa 394
             ||||| ||||| |||||||| || |||| ||| || || ||  |||||||||||||||||
Sbjct: 28505 aggcttttccgtgtgctgacccctgttaaagggtttgttccatttgcatatttgcacaaa 28446

                
Query: 395   gcc 397
             |||
Sbjct: 28445 gcc 28443



 Score =  119 bits (60), Expect = 1e-23
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                         
Query: 399   gtttctgtggtaggtcaataacagcatcgctgaagtcagcaccttcaatggttgctccac 458
             |||||||||  ||||||||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 27777 gtttctgtgtcaggtcaataacagcatcactgaagtctgcaccttcaatgattgctccac 27718

                                                                         
Query: 459   cgagatcactgcgtgtaaggacagtccgcgaaagcacagcatttgtgagattagcttcat 518
             | ||||| || || |||||||| | |||   ||||||||||||||| || ||||||||||
Sbjct: 27717 caagatcgctacgcgtaaggactgaccgtacaagcacagcatttgtaaggttagcttcat 27658

                 
Query: 519   tgag 522
             ||||
Sbjct: 27657 tgag 27654
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>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence
          Length = 171048

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   attctgctttatcttttaccc 133
             |||||||||||||||||||||
Sbjct: 36663 attctgctttatcttttaccc 36683
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>emb|Z49066.1|CEC04H4 Caenorhabditis elegans Cosmid C04H4, complete sequence
          Length = 33421

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    ttccagaagattccctagttt 36
             |||||||||||||||||||||
Sbjct: 23819 ttccagaagattccctagttt 23839
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>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence
          Length = 146978

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   attctgctttatcttttaccc 133
             |||||||||||||||||||||
Sbjct: 23085 attctgctttatcttttaccc 23105
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>gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complete sequence
          Length = 171858

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 277   acttaaaagaggggatgaagg 297
             |||||||||||||||||||||
Sbjct: 86118 acttaaaagaggggatgaagg 86138
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>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence
          Length = 164706

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     agcatacctctttccagaaga 25
             |||||||||||||||||||||
Sbjct: 12059 agcatacctctttccagaaga 12039
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    ttggtcccgcttgcatatttgcac 391
              |||||| |||||||||||||||||
Sbjct: 323270 ttggtctcgcttgcatatttgcac 323293
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     gcgactgttaccacacccaa 335
               ||||||||||||||||||||
Sbjct: 1752136 gcgactgttaccacacccaa 1752155
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>gb|AC131208.2| Homo sapiens 3 BAC RP11-698P15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 57881

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   gagaaaagaagatggaacgg 88
            ||||||||||||||||||||
Sbjct: 9000 gagaaaagaagatggaacgg 9019
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>gb|AC084335.6| Homo sapiens chromosome 18, clone RP11-1119E12, complete sequence
          Length = 152535

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   tatttgcacaaagccagttt 402
             ||||||||||||||||||||
Sbjct: 38672 tatttgcacaaagccagttt 38691
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>gb|AC157277.2| Mus musculus BAC clone RP23-465H15 from chromosome 15, complete
             sequence
          Length = 177253

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 414   caataacagcatcgctgaagtcag 437
             ||||||||||||| ||||||||||
Sbjct: 67787 caataacagcatctctgaagtcag 67764
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>gb|AC011200.9|AC011200 Homo sapiens chromosome 8 clone RP11-71N3, complete sequence
          Length = 161271

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ctctttccagaagattccct 31
             ||||||||||||||||||||
Sbjct: 95738 ctctttccagaagattccct 95757
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>gb|AC131042.6| Homo sapiens chromosome 8, clone CTD-2607C6, complete sequence
          Length = 152632

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ctctttccagaagattccct 31
             ||||||||||||||||||||
Sbjct: 66195 ctctttccagaagattccct 66176
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>gb|AC115848.10| Mus musculus chromosome 3, clone RP24-248L23, complete sequence
          Length = 143257

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    gcaccttcaatggttgctcc 456
              ||||||||||||||||||||
Sbjct: 110921 gcaccttcaatggttgctcc 110940
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>emb|AL935049.19| Zebrafish DNA sequence from clone CH211-185K2 in linkage group 20,
              complete sequence
          Length = 148715

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    actagcttcatcacaaaaaccatc 249
              ||||||||||||||| ||||||||
Sbjct: 136134 actagcttcatcacacaaaccatc 136111
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>emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in linkage group 20,
             complete sequence
          Length = 246647

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 226   actagcttcatcacaaaaaccatc 249
             ||||||||||||||| ||||||||
Sbjct: 75624 actagcttcatcacacaaaccatc 75647
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>emb|AJ233662.1|BTA233662 Bos taurus endogenous retroviral sequence ERV-L pol gene, clone
           ERV-L Cow1
          Length = 303

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 346 ggtgctgactccagttatag 365
           ||||||||||||||||||||
Sbjct: 31  ggtgctgactccagttatag 50


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,400,249
Number of Sequences: 3902068
Number of extensions: 4400249
Number of successful extensions: 84135
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84064
Number of HSP's gapped (non-prelim): 71
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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