ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags17o01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 327 bits (165), Expect = 3e-86 Identities = 253/281 (90%), Gaps = 1/281 (0%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596 Query: 319 gggtcctcacaatccgacacgct-gcggaactctatcgagacgaagcaaaccggaaacac 377 | |||||||||||||| |||||| ||||||||||||||||||| || |||||||||||| Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactctatcgagacggaggaaaccggaaacaa 2536 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcagtctaa 437 ||||||| || || |||||||||||||| ||||| ||||| ||||| | |||||| Sbjct: 2535 gcatcaacacacgatatacaccacacgatgcaagacacacatgatacatgaacggtctaa 2476 Query: 438 tgcaaggcatgacaatcacaacaatccaacactacacattaagtgaagctcgatatgcaa 497 |||| |||||| |||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 2475 tgcacggcatggcaatcacaacaatcaaacattacacattaagtgaagctcgatatgcaa 2416 Query: 498 cgagttgcatatcgacgaaactccacgttgaattatttagt 538 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 2415 cgagttgtatatcgacgaagctccacgtttaattatttagt 2375 Score = 240 bits (121), Expect = 5e-60 Identities = 159/172 (92%), Gaps = 6/172 (3%) Strand = Plus / Minus Query: 8 gaattggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacat 67 ||||||||||||||||||||||||||||||||||||||| | || ||||||||||| ||| Sbjct: 4188 gaattggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcat 4129 Query: 68 caagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtc 127 ||||||||||||||||||||| || ||||||||||||||||| || ||||||||| Sbjct: 4128 caagagtaagagcagggtccgactacggacgaaaacaaacgagaa------aacgacgtc 4075 Query: 128 catccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4074 catccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 4023 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 261 g 261 | Sbjct: 3947 g 3947 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 603 aattaatctacctaattaggcattttaaatga 634 |||||||||||||| |||||||||||||||| Sbjct: 2262 aattaatctacctagctaggcattttaaatga 2231 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 603 aattaatctacctaattaggcattttaaatga 634 ||||||||| |||| |||||||||||||||| Sbjct: 2311 aattaatctgcctagctaggcattttaaatga 2280
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 327 bits (165), Expect = 3e-86 Identities = 253/281 (90%), Gaps = 1/281 (0%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596 Query: 319 gggtcctcacaatccgacacgct-gcggaactctatcgagacgaagcaaaccggaaacac 377 | |||||||||||||| |||||| ||||||||||||||||||| || |||||||||||| Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactctatcgagacggaggaaaccggaaacaa 2536 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcagtctaa 437 ||||||| || || |||||||||||||| ||||| ||||| ||||| | |||||| Sbjct: 2535 gcatcaacacacgatatacaccacacgatgcaagacacacatgatacatgaacggtctaa 2476 Query: 438 tgcaaggcatgacaatcacaacaatccaacactacacattaagtgaagctcgatatgcaa 497 |||| |||||| |||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 2475 tgcacggcatggcaatcacaacaatcaaacattacacattaagtgaagctcgatatgcaa 2416 Query: 498 cgagttgcatatcgacgaaactccacgttgaattatttagt 538 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 2415 cgagttgtatatcgacgaagctccacgtttaattatttagt 2375 Score = 264 bits (133), Expect = 3e-67 Identities = 160/169 (94%) Strand = Plus / Minus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 |||||||||||||||||||||||||||||||||||| | || ||||||||| | |||||| Sbjct: 4191 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacatcatcatcaa 4132 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||| Sbjct: 4131 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccat 4072 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4071 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 4023 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 261 g 261 | Sbjct: 3947 g 3947 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 603 aattaatctacctaattaggcattttaaatga 634 |||||||||||||| |||||||||||||||| Sbjct: 2262 aattaatctacctagctaggcattttaaatga 2231 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 603 aattaatctacctaattaggcattttaaatga 634 ||||||||| |||| |||||||||||||||| Sbjct: 2311 aattaatctgcctagctaggcattttaaatga 2280
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 327 bits (165), Expect = 3e-86 Identities = 253/281 (90%), Gaps = 1/281 (0%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596 Query: 319 gggtcctcacaatccgacacgct-gcggaactctatcgagacgaagcaaaccggaaacac 377 | |||||||||||||| |||||| ||||||||||||||||||| || |||||||||||| Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactctatcgagacggaggaaaccggaaacaa 2536 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcagtctaa 437 ||||||| || || |||||||||||||| ||||| ||||| ||||| | |||||| Sbjct: 2535 gcatcaacacacgatatacaccacacgatgcaagacacacatgatacatgaacggtctaa 2476 Query: 438 tgcaaggcatgacaatcacaacaatccaacactacacattaagtgaagctcgatatgcaa 497 |||| |||||| |||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 2475 tgcacggcatggcaatcacaacaatcaaacattacacattaagtgaagctcgatatgcaa 2416 Query: 498 cgagttgcatatcgacgaaactccacgttgaattatttagt 538 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 2415 cgagttgtatatcgacgaagctccacgtttaattatttagt 2375 Score = 280 bits (141), Expect = 6e-72 Identities = 322/377 (85%), Gaps = 4/377 (1%) Strand = Plus / Minus Query: 260 tgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaacg 319 ||||||||||||||||||||||| |||| ||| || | | |||| |||||||||||| Sbjct: 10185 tgagatcccgcttggaagaagaacaactcggtggagtcggcaaaccatcgtagtcgaacg 10126 Query: 320 ggtcctcacaatccgacacgct-gcggaactctatcgagacgaagcaaaccggaaacaca 378 ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 10125 ggtcctcact-tccgacacgcttgcggaactctatcgagacgaaggaaaccggaaacaag 10067 Query: 379 aatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcagtctaat 438 |||||||| || || |||||||||||||| ||||| ||||||||||| | |||||| Sbjct: 10066 aatcaacacacgatatacaccacacgatgcaagacacacatgatgcatgaacgttctaat 10007 Query: 439 gcaaggcatgacaatcacaacaatccaacactacacattaagtgaagctcgatatgcaac 498 ||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||| | Sbjct: 10006 gcaaggcatgacaatcacaacgatcaaacactacacattaagtgaagctgggtatgcacc 9947 Query: 499 gagttgcatatcgacgaaactccacgttgaattatttagtacacttcccgttcaggtaca 558 | ||| |||||||||||||||||||||| | ||||||||| | ||||| | || |||| Sbjct: 9946 gggttacatatcgacgaaactccacgtttatttatttagttc-tatcccgattagataca 9888 Query: 559 cggcaatattaaatgtggttaaacgtggcaaggaggtgaagca-taattaatctacctaa 617 || ||||||||||||| |||||| |||| | ||||||||| |||||||||||||| Sbjct: 9887 cgacaatattaaatgttattaaacatggctcgagggtgaagcacaaattaatctacctag 9828 Query: 618 ttaggcattttaaatga 634 |||||||||||||||| Sbjct: 9827 ctaggcattttaaatga 9811 Score = 264 bits (133), Expect = 3e-67 Identities = 160/169 (94%) Strand = Plus / Minus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 |||||||||||||||||||||||||||||||||||| | || ||||||||| | |||||| Sbjct: 4191 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacatcatcatcaa 4132 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||| Sbjct: 4131 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccat 4072 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4071 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 4023 Score = 242 bits (122), Expect = 1e-60 Identities = 159/170 (93%), Gaps = 1/170 (0%) Strand = Plus / Minus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 ||||||||||||||||||||| |||||||||||||| | || ||||||||||| |||||| Sbjct: 11729 ttggcttacactcgccacaagttacatcagagtcacatcagtacattacataatcatcaa 11670 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacga-caaaagaataacgacgtcca 129 |||||||||||||||||| || ||||||||||||||||| |||| || ||||||||||| Sbjct: 11669 gagtaagagcagggtccgactacggacgaaaacaaacgagaaaaataagaacgacgtcca 11610 Query: 130 tccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11609 tccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 11560 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 11547 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 11488 Query: 261 g 261 | Sbjct: 11487 g 11487 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 261 g 261 | Sbjct: 3947 g 3947 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 603 aattaatctacctaattaggcattttaaatga 634 |||||||||||||| |||||||||||||||| Sbjct: 2262 aattaatctacctagctaggcattttaaatga 2231 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 603 aattaatctacctaattaggcattttaaatga 634 ||||||||| |||| |||||||||||||||| Sbjct: 2311 aattaatctgcctagctaggcattttaaatga 2280
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 299 bits (151), Expect = 6e-78 Identities = 172/179 (96%) Strand = Plus / Minus Query: 1 atatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacattaca 60 |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct: 10561 atatattgaattggcttacactcgccacaagctacatcagagtcacatcaatacattaca 10502 Query: 61 taaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataa 120 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || Sbjct: 10501 taaacatcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaa 10442 Query: 121 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10441 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 10383 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct: 10367 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 10308 Query: 261 g 261 | Sbjct: 10307 g 10307
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 299 bits (151), Expect = 6e-78 Identities = 172/179 (96%) Strand = Plus / Minus Query: 1 atatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacattaca 60 |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct: 3004 atatattgaattggcttacactcgccacaagctacatcagagtcacatcaatacattaca 2945 Query: 61 taaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataa 120 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || Sbjct: 2944 taaacatcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaa 2885 Query: 121 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2884 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 2826 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct: 2810 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 2751 Query: 261 g 261 | Sbjct: 2750 g 2750
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 287 bits (145), Expect = 2e-74 Identities = 163/169 (96%) Strand = Plus / Plus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 |||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct: 64849 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaa 64908 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct: 64909 gagtaagagcagggtccgtctacggacgaaaacaaacgacaaaagaagaacgacgtccat 64968 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64969 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 65017 Score = 240 bits (121), Expect = 5e-60 Identities = 162/173 (93%), Gaps = 2/173 (1%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 66389 ctgagatcctgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 66448 Query: 319 gggtcctcacaatccgacacgct-gcggaactctatcgagacgaagcaaaccggaaacac 377 ||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||| Sbjct: 66449 gggtcctcaca-tccgacacgcttgcggaactctatcgagacggggaaaaccggaaacac 66507 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagc 430 |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 66508 aaatcatcacacggaattcaccacacgatgcacaacacatatgatgcatgagc 66560 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 459 caatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaac 518 ||||| ||||||||||||||||||||| || ||| |||||||||||||||| |||||||| Sbjct: 66598 caatcaaacactacacattaagtgaagttcaatacgcaacgagttgcatattgacgaaac 66657 Query: 519 tccacgtt 526 |||||||| Sbjct: 66658 tccacgtt 66665 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||| Sbjct: 65036 caactccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctgtacctgcaact 65095 Query: 261 g 261 | Sbjct: 65096 g 65096
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 276 bits (139), Expect = 9e-71 Identities = 160/167 (95%) Strand = Plus / Plus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 |||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct: 102781 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaa 102840 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 102841 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccat 102900 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatga 177 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102901 ccttgctatcccaggctgccggcctggaacccatcctagatcgatga 102947 Score = 260 bits (131), Expect = 5e-66 Identities = 164/175 (93%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 104340 ctgagatcccgcctggaagaagaacaactccgtgaagcagacgaaccgacgtagtcgaac 104399 Query: 319 gggtcctcacaatccgacacgctgcggaactctatcgagacgaagcaaaccggaaacaca 378 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104400 gggtcctcacaatccggcacgctgcggaactctatcgagacgaagcaaaccggaaacaca 104459 Query: 379 aatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcagt 433 |||||||| || || |||||||||| ||||||||||||||||||||||||||| Sbjct: 104460 aatcaacacacgatatacaccacacgacgcacaacacatatgatgcatgagcagt 104514 Score = 147 bits (74), Expect = 5e-32 Identities = 172/201 (85%), Gaps = 3/201 (1%) Strand = Plus / Plus Query: 443 ggcatgacaatcacaacaatccaacactacacattaagtgaagctcgatatgcaacgagt 502 |||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||| Sbjct: 104533 ggcatgacaatccacacaatcaaacactacacattaagtgaagttcaatatgcaacgagt 104592 Query: 503 tgcatatcgacgaaactccacgttgaattatttagtacacttcccgttcaggtacacggc 562 ||||||| |||||||||||||| | |||||| || | | |||| | || |||||||| Sbjct: 104593 tgcatattt-cgaaactccacgttaatttatttggttctat-cccgattagttacacggc 104650 Query: 563 aatattaaatgtggttaaacgtggcaaggaggtgaagcataattaatctacctaattagg 622 |||||||||| || |||||| ||||||| ||||||||| || |||||||||||| |||| Sbjct: 104651 aatattaaatatgattaaacatggcaag-aggtgaagcgtagttaatctacctatctagg 104709 Query: 623 cattttaaatgangttggaaa 643 |||||||||||| || ||||| Sbjct: 104710 cattttaaatgaggtcggaaa 104730 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 102965 caacttcaaatgaacaatcaacgcgctcacgtcaaataacctttacctgtacctgcaact 103024 Query: 261 g 261 | Sbjct: 103025 g 103025
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 272 bits (137), Expect = 1e-69 Identities = 167/177 (94%) Strand = Plus / Minus Query: 1 atatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacattaca 60 |||||| || |||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct: 327167 atatatagagttggcttacactcgccacaagctacatcagagtcacatcagtacattaca 327108 Query: 61 taaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataa 120 ||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||| || Sbjct: 327107 taatcatcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaagaagaa 327048 Query: 121 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatga 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327047 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatga 326991 Score = 242 bits (122), Expect = 1e-60 Identities = 166/180 (92%), Gaps = 3/180 (1%) Strand = Plus / Minus Query: 1 atatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacattaca 60 |||||| || |||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct: 131564 atatatagagttggcttacactcgccacaagctacatcagagtcacatcagtacattaca 131505 Query: 61 taaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataa 120 | |||||||||||||||||||||||| || |||| |||||||||||| ||||||| || Sbjct: 131504 t---catcaagagtaagagcagggtccgactacggaagaaaacaaacgagaaaagaagaa 131448 Query: 121 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaagg 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 131447 cgacgtccatccttgctatcccaggctgccgccctggaacccatcctagatcgatgaagg 131388 Score = 172 bits (87), Expect = 9e-40 Identities = 156/175 (89%), Gaps = 3/175 (1%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| Sbjct: 130044 ctgagatcccgcttggaagaagaatgtctccgtgaagcacacgaaccgacgtagtcgaac 129985 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaaccggaaacac 377 |||||||||| ||||||||||| ||||| ||||||||||||| | |||||||||||| Sbjct: 129984 gggtcctcac-atccgacacgcttgcgg-actctatcgagacagggaaaaccggaaacaa 129927 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcag 432 |||||||| || |||||||||||||||||| ||| | ||||||||||||||| Sbjct: 129926 gaatcaacacacgatattcaccacacgatgcacgacataaatgatgcatgagcag 129872 Score = 165 bits (83), Expect = 2e-37 Identities = 163/186 (87%), Gaps = 3/186 (1%) Strand = Plus / Minus Query: 458 acaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaa 517 |||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct: 177170 acaatcaaacactacacattaagtgaagttcaatatgcaacgagttgcatattgacgaaa 177111 Query: 518 ctccacgttgaattatttagtacacttcccgttcaggtacacggcaatattaaatgtggt 577 ||||||||| ||||||||||| | ||||| | || || ||| |||||||||||||| | Sbjct: 177110 ctccacgtt-aattatttagttc-tatcccgattagttatacgacaatattaaatgtgtt 177053 Query: 578 taaacgtggcaaggaggtgaagcataattaatctacctaattaggcattttaaatgangt 637 ||||| |||||| |||||||||||||||||| |||| || |||||||||||||||| || Sbjct: 177052 taaacatggcaa-gaggtgaagcataattaaactacatatctaggcattttaaatgaggt 176994 Query: 638 tggaaa 643 ||||| Sbjct: 176993 cggaaa 176988 Score = 157 bits (79), Expect = 6e-35 Identities = 154/175 (88%), Gaps = 3/175 (1%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| Sbjct: 177377 ctgagatcccgcttggaagaagaatgtctccgtgaagaacacgaaccgacgtagtcgaat 177318 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaaccggaaacac 377 |||||||||| ||||||||||| ||||| |||||||| ||||| | |||||||||||| Sbjct: 177317 gggtcctcac-atccgacacgcttgcgg-actctatcaagacggggaaaaccggaaacaa 177260 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcag 432 |||||||| || |||||||||||||||||| ||| | ||||||||||||||| Sbjct: 177259 gaatcaacacacgatattcaccacacgatgcacgacataaatgatgcatgagcag 177205 Score = 157 bits (79), Expect = 6e-35 Identities = 157/178 (88%), Gaps = 5/178 (2%) Strand = Plus / Minus Query: 458 acaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaa 517 |||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct: 129837 acaatcaaacactacacattaagtgaagttcaatatgcaacgagttgcatattgacgaaa 129778 Query: 518 ctccacgttgaattatttagtac-acttcccgttcaggtacacggcaatattaaatgtgg 576 ||||||||| ||||||||||| | || |||| | || || ||| |||||||||||||| Sbjct: 129777 ctccacgtt-aattatttagttctac--cccgattagttatacgacaatattaaatgtgt 129721 Query: 577 ttaaacgtggcaaggaggtgaagcataattaatctacctaattaggcattttaaatga 634 |||||| |||||| |||||||||||||||||| |||| || |||||||||||||||| Sbjct: 129720 ttaaacatggcaa-gaggtgaagcataattaaactacatatctaggcattttaaatga 129664 Score = 147 bits (74), Expect = 5e-32 Identities = 117/130 (90%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 325599 ctgagatcccacttggaagaagaacaactccgtgaagtagacgaaccaacgtagtcgaac 325540 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaaccggaaacac 377 ||||||||||| |||||||||| |||| ||||||||||||||| || |||||||||||| Sbjct: 325539 gggtcctcacattccgacacgcttgcgaaactctatcgagacggaggaaaccggaaacaa 325480 Query: 378 aaatcaacat 387 | |||||||| Sbjct: 325479 acatcaacat 325470 Score = 131 bits (66), Expect = 3e-27 Identities = 149/170 (87%), Gaps = 5/170 (2%) Strand = Plus / Minus Query: 466 acactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccacgt 525 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 325368 acactacacattaagtgaagctcgatatgcaacgagttgcatattgacgaaactccac-a 325310 Query: 526 tgaattatttagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacgtg 585 || |||||||||| | ||||| | |||||||||||||||||| |||||||| | | || Sbjct: 325309 tgtattatttagttc-tatcccgattaggtacacggcaatattatatgtggtt-atcatg 325252 Query: 586 gcaaggaggtgaagca-taattaatctacctaattaggcattttaaatga 634 ||| |||||||| || |||||||||||||| |||||||||||||||| Sbjct: 325251 acaa-gaggtgaaacacaaattaatctacctagctaggcattttaaatga 325203 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 326973 caactccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtacctgcaact 326914 Query: 261 g 261 | Sbjct: 326913 g 326913 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||||||||||||||||||||| | |||| | |||||||| ||||||||||||| Sbjct: 131376 caactccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctgcaact 131317 Query: 261 g 261 | Sbjct: 131316 g 131316
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 264 bits (133), Expect = 3e-67 Identities = 160/169 (94%) Strand = Plus / Plus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 ||||||||||||||||||| |||||||||||||||| | || |||||||||| |||||| Sbjct: 68153 ttggcttacactcgccacaggctacatcagagtcacataagttcattacataatcatcaa 68212 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 68213 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccat 68272 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68273 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 68321 Score = 248 bits (125), Expect = 2e-62 Identities = 158/169 (93%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 69688 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 69747 Query: 319 gggtcctcacaatccgacacgctgcggaactctatcgagacgaagcaaaccggaaacaca 378 |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 69748 gggtcctcacaatccggcacgctgcggaactctaacgagacgaagaaaaccggaaacaca 69807 Query: 379 aatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatg 427 |||||||| | ||||||||||||| | |||||||| |||||||||||| Sbjct: 69808 aatcaacacacagaattcaccacacaaagcacaacatatatgatgcatg 69856 Score = 149 bits (75), Expect = 1e-32 Identities = 161/186 (86%), Gaps = 3/186 (1%) Strand = Plus / Plus Query: 458 acaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaa 517 |||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct: 69897 acaatcaaacactacacattaagtgaagttcaatatgcaacgagttgcatattgacgaaa 69956 Query: 518 ctccacgttgaattatttagtacacttcccgttcaggtacacggcaatattaaatgtggt 577 |||||| || ||||||||||| ||| ||||| | | |||| ||||||||||||||| | Sbjct: 69957 ctccacatt-aattatttagttcac-tcccggttaaatacatagcaatattaaatgtgat 70014 Query: 578 taaacgtggcaaggaggtgaagcataattaatctacctaattaggcattttaaatgangt 637 ||||| |||||| || ||||||| |||||| ||||||| |||||||||||||||| || Sbjct: 70015 taaacatggcaa-gatgtgaagcgcaattaaactacctacctaggcattttaaatgaggt 70073 Query: 638 tggaaa 643 ||||| Sbjct: 70074 cggaaa 70079 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 ||||||||||||||||||||| |||||||| |||| ||||| |||| ||||||||||||| Sbjct: 68334 caactccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctgcaact 68393 Query: 261 g 261 | Sbjct: 68394 g 68394
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 264 bits (133), Expect = 3e-67 Identities = 160/169 (94%) Strand = Plus / Minus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 |||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct: 11070 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaa 11011 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 11010 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccat 10951 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 10950 ccttgctatccgagggtgccggcctggaacccatcctagatcgatgaag 10902 Score = 252 bits (127), Expect = 1e-63 Identities = 162/171 (94%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| Sbjct: 9538 ctgagatcccgcttggaagaggaatgcctccgtgaagcagacgaaccgacgtagtcgaac 9479 Query: 319 gggtcctcacaatccgacacgct-gcggaactctatcgagacgaagcaaaccggaaacac 377 ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 9478 gggtcctcaca-tccgacacgcttgcagaactctatcgagacgaagcaaaccggaaacac 9420 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatga 428 ||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct: 9419 aaatcaacacacggaattcaccacacgatgcacaacacaaatgatgcatga 9369 Score = 178 bits (90), Expect = 2e-41 Identities = 173/197 (87%), Gaps = 3/197 (1%) Strand = Plus / Minus Query: 465 aacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccacg 524 ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| Sbjct: 9323 aacactacacattaagtgaagttcaatatgcaacgagttgcatattgacgaaactccacg 9264 Query: 525 ttgaattatttagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacgt 584 || ||||||||||| | ||||| | || ||||||||||||||||||||| |||||| | Sbjct: 9263 tt-aattatttagttc-tatcccgattagatacacggcaatattaaatgtgattaaacat 9206 Query: 585 ggcaaggaggtgaagcataattaatctacctaattaggcattttaaatgangttggaaac 644 ||||| |||||||||| |||||||| |||||| |||||||||||||||| || ||||| Sbjct: 9205 ggcaa-gaggtgaagcgtaattaatgtacctatctaggcattttaaatgaggtcggaaat 9147 Query: 645 aactcatagcatctccg 661 || |||||||||||| Sbjct: 9146 gacatatagcatctccg 9130 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||||||||||||||||||||| | | || || | ||||||||||||||||||| Sbjct: 10886 caactccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtacctgcaact 10827 Query: 261 g 261 | Sbjct: 10826 g 10826
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 256 bits (129), Expect = 8e-65 Identities = 159/169 (94%) Strand = Plus / Plus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 ||||||||||||||||| |||||||||||||||| | | || ||||||||||||||| || Sbjct: 16379 ttggcttacactcgccaaaagctacatcagagtcgcttcagtacattacataaacatgaa 16438 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||| Sbjct: 16439 gagtaagagcagggtccgactacagacgaaaacaaacgacaaaagaagaacgacgtccat 16498 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16499 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 16547 Score = 254 bits (128), Expect = 3e-64 Identities = 161/172 (93%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||| Sbjct: 17918 ctgagatcccgcttggaagaagaatgcctgcgtgaagctgacgaaccgacgtagtcgaac 17977 Query: 319 gggtcctcacaatccgacacgctgcggaactctatcgagacgaagcaaaccggaaacaca 378 |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 17978 gggtcctcacaatccggcacgctccggaactctatcgagacgaagcaacccggaaacaca 18037 Query: 379 aatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagc 430 |||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct: 18038 aatcaacacccgaaactcaccacacgatgcacaacacatatgatgcatgagc 18089 Score = 105 bits (53), Expect = 2e-19 Identities = 59/61 (96%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 16563 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 16622 Query: 261 g 261 | Sbjct: 16623 g 16623 Score = 97.6 bits (49), Expect = 4e-17 Identities = 100/113 (88%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 458 acaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaa 517 |||||| ||||||||||||||||||||| || |||||| ||||||||||||| ||||||| Sbjct: 18126 acaatcaaacactacacattaagtgaagttcaatatgc-acgagttgcatattgacgaaa 18184 Query: 518 ctccacgttgaattatttagtacacttcccgttcaggtacacggcaatattaa 570 |||||||| ||||||||||| ||| ||||| | | |||||||||||||||| Sbjct: 18185 ttccacgtt-aattatttagttcac-tcccggttatctacacggcaatattaa 18235
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 252 bits (127), Expect = 1e-63 Identities = 164/175 (93%), Gaps = 1/175 (0%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| Sbjct: 38836 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaactgacgtagtcgaac 38895 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaaccggaaacac 377 |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct: 38896 gggtcctcacaatccgacacgcttgcggaactctatcgggacaaagcaaaccggaaacac 38955 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagcag 432 ||||||||| || |||||||||||||||||||||||| ||||||||||||||| Sbjct: 38956 aaatcaacacacgatattcaccacacgatgcacaacacaaatgatgcatgagcag 39010 Score = 232 bits (117), Expect = 1e-57 Identities = 157/169 (92%), Gaps = 1/169 (0%) Strand = Plus / Plus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 ||||||||||||| |||||||||||||||||||||| | || ||||||||||| |||||| Sbjct: 37289 ttggcttacactcaccacaagctacatcagagtcacatcagtacattacataatcatcaa 37348 Query: 71 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 130 |||||||||| ||||||| || ||||||||||||||||| |||| | |||||||||||| Sbjct: 37349 gagtaagagcggggtccgactacggacgaaaacaaacgagaaaatga-aacgacgtccat 37407 Query: 131 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37408 ccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 37456 Score = 129 bits (65), Expect = 1e-26 Identities = 166/193 (86%), Gaps = 5/193 (2%) Strand = Plus / Plus Query: 443 ggcatgacaatcacaacaatccaacactacacattaagtgaagctcgatatgcaacgagt 502 |||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||| Sbjct: 39030 ggcatgacaatccacacaatcaaacactacacattaagtgaagttcaatatgcaacgagt 39089 Query: 503 tgcatatcgacgaaactccacgt-tgaattatttagtacacttcccgttcaggtacacgg 561 ||||||| ||||||||||||| | ||||||||||||| |||| || ||| | ||||||| Sbjct: 39090 tgcatattgacgaaactccacatatgaattatttagttcactgccggtt-atttacacgg 39148 Query: 562 caatattaaatgtggttaaacgtggcaaggaggtgaagcataattaatctacctaattag 621 ||||||| ||||| || |||| | |||| |||||||||| ||||||| |||| || ||| Sbjct: 39149 caatatt-aatgttgtcaaacat-gcaa-gaggtgaagcgtaattaaactacttatctag 39205 Query: 622 gcattttaaatga 634 |||||||||||| Sbjct: 39206 tcattttaaatga 39218 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||||| Sbjct: 37472 caactcaaaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtacctgcaact 37531 Query: 261 g 261 | Sbjct: 37532 g 37532
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 250 bits (126), Expect = 5e-63 Identities = 160/170 (94%), Gaps = 1/170 (0%) Strand = Plus / Plus Query: 11 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 70 |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 3318 ttggcttacactcgccacaagctacatcagagtcacctcagtacattacataatcatcaa 3377 Query: 71 gagtaagagcagggtccgtctgcggacgaaaa-caaacgacaaaagaataacgacgtcca 129 |||||||||||||||||| || ||| ||||| ||||||||||||||| ||||||||||| Sbjct: 3378 gagtaagagcagggtccgactatggatgaaaaacaaacgacaaaagaagaacgacgtcca 3437 Query: 130 tccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 3438 tccttgctatcccaggctgccggcctggaacccatcctagatcgaagaag 3487 Score = 176 bits (89), Expect = 6e-41 Identities = 155/173 (89%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 4859 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 4918 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaaccggaaacac 377 |||||||||| ||||||||||| |||||||||||||||| ||| || ||| |||| ||| Sbjct: 4919 gggtcctcac-atccgacacgcttgcggaactctatcgatacggaggaaa-cggagacaa 4976 Query: 378 aaatcaacatgcggaattcaccacacgatgcacaacacatatgatgcatgagc 430 ||||||| || || |||||| |||||||||||||||||||||||||||| Sbjct: 4977 gcatcaacacacgatatccaccactcgatgcacaacacatatgatgcatgagc 5029 Score = 89.7 bits (45), Expect = 1e-14 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 458 acaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaa 517 |||||| ||||||||||||||||||||| || |||||| ||||||||||||| ||||||| Sbjct: 5066 acaatcaaacactacacattaagtgaagttcaatatgc-acgagttgcatattgacgaaa 5124 Query: 518 ctccacgtt 526 ||||||||| Sbjct: 5125 ctccacgtt 5133 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 |||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct: 3503 caactccagatgaacaatcaacgcgctcacgtcgaataacctttacctgtacctgcaact 3562 Query: 261 g 261 | Sbjct: 3563 g 3563
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 236 bits (119), Expect = 8e-59 Identities = 155/167 (92%) Strand = Plus / Plus Query: 13 ggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaaga 72 |||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||| Sbjct: 2553 ggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaagg 2612 Query: 73 gtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcc 132 |||||||||||||||| || ||||||||||||| ||| ||||||| |||||||||||||| Sbjct: 2613 gtaagagcagggtccgactacggacgaaaacaaccgagaaaagaagaacgacgtccatcc 2672 Query: 133 ttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 |||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 2673 ttgctatcccaggctgccggtctggaacccatcctagattgatgaag 2719 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 201 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 260 ||||||||||| ||||||| |||||||||| |||| |||||||||| ||||| ||||||| Sbjct: 2762 caactccaaataaacaatccacgcgctcgcgtcaagtaacctttacatgtacttgcaact 2821 Query: 261 g 261 | Sbjct: 2822 g 2822
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 157 bits (79), Expect = 6e-35 Identities = 156/180 (86%), Gaps = 5/180 (2%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacattacat 61 ||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct: 2411 tatatggaattggcttacaatcgccacaagctacatcagagtcacatcgatacattacat 2352 Query: 62 aaa--catcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaata 119 | | | || || |||||||||||||| || || |||||||||||||| ||||||| Sbjct: 2351 acaatcgccatgaagaagagcagggtccgactacgaacgaaaacaaacgataaaagaa-- 2294 Query: 120 acgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 2293 -cgacgtccatccttgctatcccaggctgccgacctggaacccatcctagatcgacgaag 2235 Score = 107 bits (54), Expect = 5e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 ||||||||| |||||||||||||| || ||||||||||||||||||| ||||| ||||| Sbjct: 865 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 806 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcg 355 || |||||||| |||||||||| |||| |||||||||| Sbjct: 805 ggttcctcacattccgacacgcttgcgaaactctatcg 768 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 453 tcacaacaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcga 512 ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 649 tcacaacaatcaaacactacacattaagtgaagctcaatatgcaacgagttgcatattga 590 Query: 513 cgaaac 518 |||||| Sbjct: 589 cgaaac 584 Score = 44.1 bits (22), Expect = 0.58 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 202 aactccaaatgaacaatcaacgcgctcgcatc-aaataacctttacctgtacctgcaact 260 ||||||||||||||||||| |||| | | || |||| ||||||| ||||||||||||| Sbjct: 2220 aactccaaatgaacaatcatcgcgtgcacgtcttaatatcctttacatgtacctgcaact 2161 Query: 261 ga 262 || Sbjct: 2160 ga 2159 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 gatgcacaacacatatgatgcatg 427 ||||||||| |||||||||||||| Sbjct: 707 gatgcacaatacatatgatgcatg 684
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 145 bits (73), Expect = 2e-31 Identities = 161/188 (85%), Gaps = 2/188 (1%) Strand = Plus / Minus Query: 469 ctacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccacgttga 528 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || Sbjct: 2367 ctacacattaagtgaagctcaatatgcaacgagttgcatattgacgaaactccacattcg 2308 Query: 529 attatttagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacgtggca 588 | |||||||| ||| || |||| ||||||||| ||||||||||||| ||||||| ||||| Sbjct: 2307 aatatttagttcac-tctcgtttaggtacacgacaatattaaatgttgttaaacatggca 2249 Query: 589 aggaggtgaagcataattaatctacctaattaggcattttaaatgangttggaaacaact 648 | |||||||||||||| ||| ||| | ||| ||| |||||||| || ||||||||| Sbjct: 2248 a-gaggtgaagcataagtaaactagacatctagtcatattaaatgaggtcggaaacaaca 2190 Query: 649 catagcat 656 ||||||| Sbjct: 2189 tatagcat 2182 Score = 71.9 bits (36), Expect = 3e-09 Identities = 92/108 (85%), Gaps = 2/108 (1%) Strand = Plus / Minus Query: 261 gagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaacgg 320 |||||||||||||||||||||| || |||||||| | ||||||| |||||||||||| Sbjct: 2583 gagatcccgcttggaagaagaacgaaaccgtgaagtaaacgaaccaacgtagtcgaacga 2524 Query: 321 gtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaa 367 |||||||| ||||| |||| | || |||| |||||||| |||||||| Sbjct: 2523 atcctcacactccga-acgctttcgaaactttatcgagaagaagcaaa 2477 Score = 67.9 bits (34), Expect = 4e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 127 ccatccttgctatcccaggctgccggcctggaacccatcctagatc 172 |||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 3985 ccatccttgctatcccaggctgcc-gcctggaacccatcctggatc 3941 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctaca 36 ||||| ||||||||||||||||||||||||||||| Sbjct: 4109 tatatggaattggcttacactcgccacaagctaca 4075
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 107 bits (54), Expect = 5e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 ||||||||| |||||||||||||| || ||||||||||||||||||| ||||| ||||| Sbjct: 6094 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 6035 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcg 355 || |||||||| |||||||||| |||| |||||||||| Sbjct: 6034 ggttcctcacattccgacacgcttgcgaaactctatcg 5997 Score = 107 bits (54), Expect = 5e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 453 tcacaacaatccaacactacacattaagtgaagctcgatatgcaacgagttgcatatcga 512 ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 5878 tcacaacaatcaaacactacacattaagtgaagctcaatatgcaacgagttgcatattga 5819 Query: 513 cgaaac 518 |||||| Sbjct: 5818 cgaaac 5813 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 gatgcacaacacatatgatgcatg 427 ||||||||| |||||||||||||| Sbjct: 5936 gatgcacaatacatatgatgcatg 5913
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 99.6 bits (50), Expect = 1e-17 Identities = 94/106 (88%), Gaps = 2/106 (1%) Strand = Plus / Minus Query: 470 tacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccacg-ttga 528 ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | || Sbjct: 2645 tacacattaagtgaagctcaatatgcaacgagttgcatattgacgaaactccacgatcga 2586 Query: 529 attatttagtacacttcccgttcaggtacacggcaatattaaatgt 574 ||| ||||| ||| ||||||| |||||| | ||||||||||||| Sbjct: 2585 tttacttagttcac-tcccgtttaggtactcatcaatattaaatgt 2541 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatcagagtcac 46 ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 4419 tatatagaattggcttacactcgtcacaagctacatcagagtcac 4375 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/106 (82%), Gaps = 7/106 (6%) Strand = Plus / Minus Query: 74 taagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcct 133 ||||||||||||||| || ||||||||| ||||| | |||| ||| |||||||| Sbjct: 4343 taagagcagggtccgactacggacgaaatcaaacaataaaat------gacatccatcct 4290 Query: 134 tgctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 |||||||| |||||||| |||| ||| |||||||| || ||||||| Sbjct: 4289 tgctatcctaggctgcc-gcctagaatccatcctaaattgatgaag 4245 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 ||||||||||||| |||||||||| || ||| ||||| ||| || || ||| ||||||| Sbjct: 2873 ctgagatcccgctcggaagaagaacgattccatgaagaagatgagccaacgttgtcgaac 2814 Query: 319 gggtcctcacaatccga 335 | |||||||| ||||| Sbjct: 2813 gaatcctcacactccga 2797
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 97.6 bits (49), Expect = 4e-17 Identities = 111/129 (86%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||||||||||||||| || ||||||||| |||||| || | ||||||||| Sbjct: 2787 ctgagatcccgcttggaagaagaacgaatccgtgaagaagacgagccaacatagtcgaac 2728 Query: 319 gggtcctcacaatccgacacgc-tgcggaactctatcgagacgaagcaaaccggaaacac 377 | |||||||| ||||| || | | |||||||||||||||| ||| ||||||||||||| Sbjct: 2727 gaatcctcacactccga-actctttcggaactctatcgagaagaaacaaaccggaaacaa 2669 Query: 378 aaatcaaca 386 |||||||| Sbjct: 2668 taatcaaca 2660 Score = 91.7 bits (46), Expect = 3e-15 Identities = 91/105 (86%), Gaps = 7/105 (6%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| |||| ||| ||||||||| Sbjct: 4230 aagagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatcctt 4177 Query: 135 gctatcccaggctgccggcctggaacccatcctagatcgatgaag 179 |||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 4176 gctatcccaggctgcc-gcctggaacccatcctatatcgaagaag 4133 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 469 ctacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccac 523 |||||||||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct: 2569 ctacacattaagtgaagctcaatatgcaacgagttgcatattggcgaaactccac 2515 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctaca 36 ||||| ||||||||||||||||||||||||||||| Sbjct: 4308 tatatggaattggcttacactcgccacaagctaca 4274
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 73.8 bits (37), Expect = 6e-10 Identities = 118/141 (83%), Gaps = 3/141 (2%) Strand = Plus / Plus Query: 464 caacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccac 523 |||||||||| |||||||| ||||| ||||| |||||||||||||| |||||||| |||| Sbjct: 152838 caacactacaaattaagtggagctcaatatgaaacgagttgcatattgacgaaacaccac 152897 Query: 524 gttgaattatttagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacg 583 ||| ||||||||| ||| || || | |||||| | ||||||||||||| | | ||| Sbjct: 152898 -atgacttatttagttcac-tctcggttaggtactcaacaatattaaatgttgattaaca 152955 Query: 584 tggcaaggaggtgaagcataa 604 |||||| ||| |||||||||| Sbjct: 152956 tggcaa-gagatgaagcataa 152975
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/167 (82%), Gaps = 3/167 (1%) Strand = Plus / Minus Query: 468 actacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccacgttg 527 |||||| |||||||| ||||| |||||||||||||||||||| || | ||| |||| || Sbjct: 766 actacaaattaagtggagctcaatatgcaacgagttgcatattgatggaacaccac-atg 708 Query: 528 aattatttagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacgtggc 587 | ||||||||| | | ||||||| | |||| | ||||||||||||| | | | | |||| Sbjct: 707 acttatttagttctc-tcccgtttatgtactcaacaatattaaatgttggttagcatggc 649 Query: 588 aaggaggtgaagcataattaatctacctaattaggcattttaaatga 634 || |||||||||||||| ||| ||| | ||||||||||||||||| Sbjct: 648 aa-gaggtgaagcataagtaaaatacacagttaggcattttaaatga 603 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaag 295 |||||||||||| ||||||||||||| ||| ||||| Sbjct: 993 ctgagatcccgcaaggaagaagaatgagtccatgaag 957
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 67.9 bits (34), Expect = 4e-08 Identities = 123/150 (82%), Gaps = 2/150 (1%) Strand = Plus / Minus Query: 464 caacactacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccac 523 |||||||||| ||||||| ||||| |||||||||||| ||||||| ||| |||| |||| Sbjct: 73194 caacactacaagttaagtggagctcaatatgcaacgagatgcatattgacaaaacaccac 73135 Query: 524 gttgaattatttagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacg 583 || |||||||||| | | ||||||| | |||| | ||||||||||||| ||| | Sbjct: 73134 attcgattatttagttctc-tcccgtttatgtacccaacaatattaaatgttaataacca 73076 Query: 584 tggcaaggaggtgaagcataattaatctac 613 |||||| ||||||| ||| ||||||||||| Sbjct: 73075 tggcaa-gaggtgaggcaaaattaatctac 73047
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 56.0 bits (28), Expect = 2e-04 Identities = 63/75 (84%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || |||||||||||||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaatgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 56.0 bits (28), Expect = 2e-04 Identities = 63/75 (84%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || |||||||||||||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaatgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 ||||||||||||| ||| ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccatctacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 48.1 bits (24), Expect = 0.037 Identities = 62/75 (82%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || |||||||||| ||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaaaaaatgataa------aatgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctaca 36 ||||| ||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctaca 113
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctaca 36 ||||| ||||||||||||||||||||||||||||| Sbjct: 146 tatatggaattggcttacactcgccacaagctaca 112
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || ||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctaca 36 ||||| ||||||||||||||||||||||||||||| Sbjct: 146 tatatggaattggcttacactcgccacaagctaca 112
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 63.9 bits (32), Expect = 6e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 75 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 134 |||||||||||||| || | ||||||||||||||| |||| |||| ||||||||| Sbjct: 69 aagagcagggtccgactacagacgaaaacaaacgataaaa------cgacatccatcctt 16 Query: 135 gctatcccaggctgc 149 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 2 tatattgaattggcttacactcgccacaagctacatca 39 ||||| ||||||||||||||||||||||||||| |||| Sbjct: 147 tatatggaattggcttacactcgccacaagctaaatca 110
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 61.9 bits (31), Expect = 2e-06 Identities = 104/127 (81%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 475 attaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccacgttgaattatt 534 ||||| || ||||| |||||||||||||||||||| |||||||| |||| | | ||||| Sbjct: 29920 attaaatggagctcaatatgcaacgagttgcatattgacgaaacaccacatcaagttatt 29861 Query: 535 tagtacacttcccgttcaggtacacggcaatattaaatgtggttaaacgtggcaaggagg 594 |||| | | || || | |||||| | ||||||||||||| ||||| | ||||||| || Sbjct: 29860 tagttctc-tctcggttaggtactcaacaatattaaatgttgttaagcatggcaagaggg 29802 Query: 595 tgaagca 601 ||||||| Sbjct: 29801 tgaagca 29795
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 469 ctacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccac 523 ||||| |||||||| || || |||||||||||||||||||| |||||||| |||| Sbjct: 8966 ctacaaattaagtggagatcaatatgcaacgagttgcatattgacgaaacaccac 9020 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 469 ctacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccac 523 ||||| |||||||| || || |||||||||||||||||||| ||| |||| |||| Sbjct: 1376 ctacaaattaagtggagatcaatatgcaacgagttgcatattgacaaaacaccac 1430 Score = 40.1 bits (20), Expect = 9.0 Identities = 56/68 (82%) Strand = Plus / Plus Query: 261 gagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaacgg 320 |||||||||| |||||||||| || ||| ||||| |||| ||| | ||||||||||| Sbjct: 1153 gagatcccgcaaggaagaagaacgagtccatgaagaagacaaacagatgtagtcgaacga 1212 Query: 321 gtcctcac 328 ||||||| Sbjct: 1213 atcctcac 1220
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||| ||||||| |||||||||| || ||| ||||| |||| ||| | ||||||||||| Sbjct: 194904 ctgaaatcccgcaaggaagaagaacgagtccatgaagtagacaaacggacgtagtcgaac 194963 Query: 319 gggtcctcacaa 330 || ||||||||| Sbjct: 194964 ggatcctcacaa 194975
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||| ||||||| |||||||||| || ||| ||||| |||| ||| | ||||| ||||| Sbjct: 85802 ctgaaatcccgcaaggaagaagaacgagtccatgaagaagacaaacggacgtagacgaac 85861 Query: 319 gggtcctcacaa 330 |||||||||||| Sbjct: 85862 gggtcctcacaa 85873 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Plus Query: 469 ctacacattaagtgaagctcgatatgcaacgagttgcatatcgacgaaactccac 523 ||||| |||||||| ||||| || ||||| ||||||||||| |||| ||| |||| Sbjct: 86028 ctacaaattaagtggagctcaatctgcaatgagttgcatattgacggaacaccac 86082 Score = 46.1 bits (23), Expect = 0.15 Identities = 88/107 (82%), Gaps = 2/107 (1%) Strand = Plus / Plus Query: 484 agctcgatatgcaacgagttgcatatcgacgaaactccacgttgaattatttagtacact 543 ||||| |||||||||||||||| ||| |||| ||| |||| | ||||||||||| ||| Sbjct: 33387 agctcaatatgcaacgagttgcctattgacggaacaccac-atcaattatttagttcac- 33444 Query: 544 tcccgttcaggtacacggcaatattaaatgtggttaaacgtggcaag 590 ||| | | |||||| | |||| |||||||| ||||||| ||||||| Sbjct: 33445 tcctggttaggtactcaacaattttaaatgttgttaaacatggcaag 33491
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 119 aacgacgtccatccttgctatcccaggctgc 149 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 119 aacgacgtccatccttgctatcccaggctgc 149 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 119 aacgacgtccatccttgctatcccaggctgc 149 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 119 aacgacgtccatccttgctatcccaggctgc 149 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 119 aacgacgtccatccttgctatcccaggctgc 149 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 119 aacgacgtccatccttgctatcccaggctgc 149 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-61j12, complete sequence Length = 116517 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 aaaacaaacgacaaaagaataa 120 |||||||||||||||||||||| Sbjct: 58886 aaaacaaacgacaaaagaataa 58865
>gb|AC171104.1| Drosophila melanogaster clone CH221-06A19, complete sequence Length = 125302 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 agcaaaccggaaacacaaatcaaca 386 ||||||||| ||||||||||||||| Sbjct: 22095 agcaaaccgaaaacacaaatcaaca 22119
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 tccttgctatcccaggctgcc 150 ||||||||||||||||||||| Sbjct: 170021 tccttgctatcccaggctgcc 170001
>gb|AC130389.3| Drosophila melanogaster 3 BAC CH221-6A19 (Children's Hospital Oakland Research Institute Drosophila melanogaster sheared DNA BAC Library) complete sequence Length = 108834 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 agcaaaccggaaacacaaatcaaca 386 ||||||||| ||||||||||||||| Sbjct: 5626 agcaaaccgaaaacacaaatcaaca 5650
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence Length = 134519 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 agaacattacataaacatcaa 70 ||||||||||||||||||||| Sbjct: 65757 agaacattacataaacatcaa 65737
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 tccttgctatcccaggctgcc 150 ||||||||||||||||||||| Sbjct: 20040 tccttgctatcccaggctgcc 20020
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ttacactcgccacaagctaca 36 ||||||||||||||||||||| Sbjct: 7583 ttacactcgccacaagctaca 7603
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ttacactcgccacaagctaca 36 ||||||||||||||||||||| Sbjct: 7352 ttacactcgccacaagctaca 7372
>gb|AE003467.4| Drosophila melanogaster chromosome 3L, section 1 of 83 of the complete sequence Length = 303512 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 agcaaaccggaaacacaaatcaaca 386 ||||||||| ||||||||||||||| Sbjct: 5626 agcaaaccgaaaacacaaatcaaca 5650
>gb|AC011249.7| Drosophila melanogaster clone BACR37F23, complete sequence Length = 164973 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttagaacattacataaacat 67 |||||||||||||||||||| Sbjct: 53766 ttagaacattacataaacat 53785
>gb|AC126805.4| Mus musculus BAC clone RP23-109A15 from 13, complete sequence Length = 177083 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ccgacacgctgcggaactct 351 |||||||||||||||||||| Sbjct: 11219 ccgacacgctgcggaactct 11200
>emb|AL365189.15| Human DNA sequence from clone RP11-595C20 on chromosome 6, complete sequence Length = 97534 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 caaggaggtgaagcataatt 606 |||||||||||||||||||| Sbjct: 47036 caaggaggtgaagcataatt 47055
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160440 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcaaaccggaaacacaaatc 382 |||||||||||||||||||| Sbjct: 56898 gcaaaccggaaacacaaatc 56917
>gb|AC108065.3| Homo sapiens BAC clone RP11-496N17 from 4, complete sequence Length = 111908 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 361 aagcaaaccggaaacacaaatcaacatg 388 |||||||| |||||||||||| |||||| Sbjct: 105405 aagcaaactggaaacacaaataaacatg 105432
>gb|AC153130.4| Mus musculus BAC clone RP24-252F22 from chromosome 13, complete sequence Length = 186412 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ccgacacgctgcggaactct 351 |||||||||||||||||||| Sbjct: 111489 ccgacacgctgcggaactct 111470
>gb|AC122472.5| Mus musculus BAC clone RP24-323G20 from chromosome 10, complete sequence Length = 180612 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 aaacacaaatcaacatgcggaatt 395 ||||||||||||||||| |||||| Sbjct: 127409 aaacacaaatcaacatgaggaatt 127386
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 40.1 bits (20), Expect = 9.0 Identities = 59/72 (81%) Strand = Plus / Minus Query: 259 ctgagatcccgcttggaagaagaatgactccgtgaagcagacgaaccggcgtagtcgaac 318 |||||||||||| ||||||||||||| ||| |||| ||| ||| | ||||| ||||| Sbjct: 100506 ctgagatcccgcaaggaagaagaatgagtccaagaagaagaaaaacggacgtagccgaac 100447 Query: 319 gggtcctcacaa 330 | ||||||||| Sbjct: 100446 gaatcctcacaa 100435
>emb|BX005464.7| Zebrafish DNA sequence from clone DKEY-24J21, complete sequence Length = 199639 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 taattaatctacctaattag 621 |||||||||||||||||||| Sbjct: 107432 taattaatctacctaattag 107451
>gb|AE003614.4| Drosophila melanogaster chromosome 2L, section 23 of 83 of the complete sequence Length = 259718 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ttagaacattacataaacat 67 |||||||||||||||||||| Sbjct: 10406 ttagaacattacataaacat 10387
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcaaaccggaaacacaaatc 382 |||||||||||||||||||| Sbjct: 74019 gcaaaccggaaacacaaatc 74038
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 aactccaaatgaacaatcaa 221 |||||||||||||||||||| Sbjct: 403914 aactccaaatgaacaatcaa 403933
>dbj|AP002512.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-3051L14, complete sequences Length = 175031 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 caaggaggtgaagcataatt 606 |||||||||||||||||||| Sbjct: 7920 caaggaggtgaagcataatt 7939 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,404,425 Number of Sequences: 3902068 Number of extensions: 4404425 Number of successful extensions: 71394 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71109 Number of HSP's gapped (non-prelim): 246 length of query: 661 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 638 effective length of database: 17,143,297,704 effective search space: 10937423935152 effective search space used: 10937423935152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
