ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL357129.11| Human DNA sequence from clone RP11-114A21 on ch... 38 4.1
2gb|AF248864.1|AF248864 Strongylocentrotus purpuratus clone 1014 ... 38 4.1
3gb|AF248863.1|AF248863 Strongylocentrotus purpuratus myosin V, c... 38 4.1
4ref|NM_214490.1| Strongylocentrotus purpuratus myosin V (LOC3732... 38 4.1
5gb|U52199.1|VAU52199 Vibrio anguillarum flagellin C (flaC) gene,... 38 4.1

>emb|AL357129.11| Human DNA sequence from clone RP11-114A21 on chromosome Xq21.31-22.1,
              complete sequence
          Length = 145380

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     aggaaccaacactgagctt 57
              |||||||||||||||||||
Sbjct: 119199 aggaaccaacactgagctt 119181



to top

>gb|AF248864.1|AF248864 Strongylocentrotus purpuratus clone 1014 myosin V, partial cds
          Length = 1702

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  acaggaaccaacactgagc 55
           |||||||||||||||||||
Sbjct: 709 acaggaaccaacactgagc 727



to top

>gb|AF248863.1|AF248863 Strongylocentrotus purpuratus myosin V, complete cds
          Length = 5751

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 37   acaggaaccaacactgagc 55
            |||||||||||||||||||
Sbjct: 3964 acaggaaccaacactgagc 3982



to top

>ref|NM_214490.1| Strongylocentrotus purpuratus myosin V (LOC373234), mRNA
          Length = 5751

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 37   acaggaaccaacactgagc 55
            |||||||||||||||||||
Sbjct: 3964 acaggaaccaacactgagc 3982



to top

>gb|U52199.1|VAU52199 Vibrio anguillarum flagellin C (flaC) gene, complete cds
          Length = 2471

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 44   ccaacactgagcttgatgc 62
            |||||||||||||||||||
Sbjct: 1241 ccaacactgagcttgatgc 1223


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 527,475
Number of Sequences: 3902068
Number of extensions: 527475
Number of successful extensions: 32659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32653
Number of HSP's gapped (non-prelim): 6
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top