ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17n18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1148 Score = 232 bits (117), Expect = 8e-58 Identities = 203/234 (86%) Strand = Plus / Minus Query: 205 tctatgactgcttcaaagacatcgntctggcgcgaaggttgagaaatatnccccagcaac 264 |||| ||||||||||||||||| | || || |||||||| |||||||| |||||||||| Sbjct: 878 tctacgactgcttcaaagacatggcccttgcacgaaggttaagaaatatcccccagcaac 819 Query: 265 atgcaacaaagctgnggacaatcacccgaaactgcaaaggcacgtactgatggtttatcc 324 |||||||||||||| ||| ||||||||| |||||||| |||| |||| ||| ||||||| Sbjct: 818 atgcaacaaagctgtggaaaatcacccggaactgcaacggcatgtacatatgatttatcc 759 Query: 325 aaccaactactggccaaaacatccaagcagacaattgcactgacagatactgnttcttca 384 ||||||||| |||||||||||||||||||||||||||||| || |||| || ||||| | Sbjct: 758 aaccaactattggccaaaacatccaagcagacaattgcaccgagggatattgtttcttaa 699 Query: 385 ccctaattttnacctccttgaaaggcctcttntnaacaacatatccataataga 438 |||| | || |||||||| ||||||||| | | |||||||||||||||||||| Sbjct: 698 ccctggtcttcacctccttaaaaggcctcctctcaacaacatatccataataga 645
>dbj|AK121976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108J17, full insert sequence Length = 1146 Score = 224 bits (113), Expect = 2e-55 Identities = 202/234 (86%) Strand = Plus / Minus Query: 205 tctatgactgcttcaaagacatcgntctggcgcgaaggttgagaaatatnccccagcaac 264 |||| ||||||||||||||||| | || || |||||||| |||||||| |||||||||| Sbjct: 876 tctacgactgcttcaaagacatggcccttgcacgaaggttaagaaatatcccccagcaac 817 Query: 265 atgcaacaaagctgnggacaatcacccgaaactgcaaaggcacgtactgatggtttatcc 324 |||||||||||||| ||| ||||||||| |||||||| |||| |||| ||| ||||||| Sbjct: 816 atgcaacaaagctgtggaaaatcacccggaactgcaacggcatgtacatatgatttatcc 757 Query: 325 aaccaactactggccaaaacatccaagcagacaattgcactgacagatactgnttcttca 384 ||||||||| |||||||||||||||||||||||| ||||| || |||| || ||||| | Sbjct: 756 aaccaactattggccaaaacatccaagcagacaactgcaccgagggatattgtttcttaa 697 Query: 385 ccctaattttnacctccttgaaaggcctcttntnaacaacatatccataataga 438 |||| | || |||||||| ||||||||| | | |||||||||||||||||||| Sbjct: 696 ccctggtcttcacctccttaaaaggcctcctctcaacaacatatccataataga 643
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 1e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 257 ccagcaacatgcaacaaagctgnggacaatcacccgaaactgcaaaggcacgtactgatg 316 |||||||||||||||||||||| ||| ||||||||| |||||||| |||| |||| ||| Sbjct: 7065906 ccagcaacatgcaacaaagctgtggaaaatcacccggaactgcaacggcatgtacatatg 7065965 Query: 317 gtttatccaaccaactactggccaaaac 344 |||||||||||||||| |||||||||| Sbjct: 7065966 atttatccaaccaactattggccaaaac 7065993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 59/70 (84%) Strand = Plus / Plus Query: 344 catccaagcagacaattgcactgacagatactgnttcttcaccctaattttnacctcctt 403 ||||||||||||||||||||| || |||| || ||||| ||||| | || |||||||| Sbjct: 7066080 catccaagcagacaattgcaccgagggatattgtttcttaaccctggtcttcacctcctt 7066139 Query: 404 gaaaggcctc 413 ||||||||| Sbjct: 7066140 aaaaggcctc 7066149 Score = 48.1 bits (24), Expect = 0.024 Identities = 46/54 (85%) Strand = Plus / Plus Query: 205 tctatgactgcttcaaagacatcgntctggcgcgaaggttgagaaatatncccc 258 |||| ||||||||||||||||| | || || |||||||| |||||||| |||| Sbjct: 7065761 tctacgactgcttcaaagacatggcccttgcacgaaggttaagaaatatccccc 7065814 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 aacaacatatccataataga 438 |||||||||||||||||||| Sbjct: 7066567 aacaacatatccataataga 7066586
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 105 bits (53), Expect = 1e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 257 ccagcaacatgcaacaaagctgnggacaatcacccgaaactgcaaaggcacgtactgatg 316 |||||||||||||||||||||| ||| ||||||||| |||||||| |||| |||| ||| Sbjct: 69325 ccagcaacatgcaacaaagctgtggaaaatcacccggaactgcaacggcatgtacatatg 69384 Query: 317 gtttatccaaccaactactggccaaaac 344 |||||||||||||||| |||||||||| Sbjct: 69385 atttatccaaccaactattggccaaaac 69412 Score = 56.0 bits (28), Expect = 1e-04 Identities = 59/70 (84%) Strand = Plus / Plus Query: 344 catccaagcagacaattgcactgacagatactgnttcttcaccctaattttnacctcctt 403 ||||||||||||||||||||| || |||| || ||||| ||||| | || |||||||| Sbjct: 69499 catccaagcagacaattgcaccgagggatattgtttcttaaccctggtcttcacctcctt 69558 Query: 404 gaaaggcctc 413 ||||||||| Sbjct: 69559 aaaaggcctc 69568 Score = 48.1 bits (24), Expect = 0.024 Identities = 46/54 (85%) Strand = Plus / Plus Query: 205 tctatgactgcttcaaagacatcgntctggcgcgaaggttgagaaatatncccc 258 |||| ||||||||||||||||| | || || |||||||| |||||||| |||| Sbjct: 69180 tctacgactgcttcaaagacatggcccttgcacgaaggttaagaaatatccccc 69233 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 aacaacatatccataataga 438 |||||||||||||||||||| Sbjct: 69986 aacaacatatccataataga 70005
>gb|AC153076.3| Aotus nancymaae clone CH258-449A9, complete sequence Length = 184072 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ccccagcaacatgcaacaaa 274 |||||||||||||||||||| Sbjct: 6191 ccccagcaacatgcaacaaa 6210
>gb|AF060096.1| Lama glama microsatellite LCA8 repeat region Length = 593 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgttatacaccaactaaatg 204 |||||||||||||||||||| Sbjct: 358 tgttatacaccaactaaatg 377
>ref|XM_456065.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F22066g predicted mRNA Length = 11295 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 agcaacatgcaacaaagctg 278 |||||||||||||||||||| Sbjct: 2217 agcaacatgcaacaaagctg 2198
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agcaacatgcaacaaagctg 278 |||||||||||||||||||| Sbjct: 2060111 agcaacatgcaacaaagctg 2060130
>gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequence Length = 139897 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ccccagcaacatgcaacaaa 274 |||||||||||||||||||| Sbjct: 130138 ccccagcaacatgcaacaaa 130157 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,820,533 Number of Sequences: 3902068 Number of extensions: 2820533 Number of successful extensions: 43544 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43502 Number of HSP's gapped (non-prelim): 42 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
