ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18c13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 230 4e-57
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 230 4e-57
3dbj|AK099540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
4dbj|AK065065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
5gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complet... 44 0.54
6emb|CR388406.7| Zebrafish DNA sequence from clone CH211-288H2 in... 42 2.1
7gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 42 2.1
8gb|AC025451.6| Homo sapiens chromosome 5 clone CTD-2141F16, comp... 42 2.1
9gb|AC156635.2| Mus musculus BAC clone RP24-364K10 from chromosom... 42 2.1
10gb|AC010432.6|AC010432 Homo sapiens chromosome 5 clone CTD-2202A... 42 2.1
11gb|AC127302.3| Mus musculus BAC clone RP23-269P7 from chromosome... 42 2.1
12emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-6... 42 2.1
13gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosom... 40 8.4
14gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, compl... 40 8.4
15gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 8.4
16gb|AC091381.3| Papio anubis clone RP41-468N20, complete sequence 40 8.4
17gb|AC163238.3| Colobus guereza clone CH272-90I19, complete sequence 40 8.4
18gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, comp... 40 8.4
19ref|XM_977689.1| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 g... 40 8.4
20ref|XM_621096.3| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 g... 40 8.4
21ref|XM_907570.2| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 g... 40 8.4
22gb|BC051701.1| Mus musculus RIKEN cDNA 4921505D17 gene, mRNA (cD... 40 8.4
23gb|AC108710.3| Homo sapiens 3p BAC RP11-88I7 (Roswell Park Cance... 40 8.4
24emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 40 8.4
25emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in... 40 8.4
26emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 i... 40 8.4
27gb|AC024890.20| Homo sapiens 3 BAC RP11-389A20 (Roswell Park Can... 40 8.4
28dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 8.4
29gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complet... 40 8.4
30gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, co... 40 8.4
31gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 40 8.4
32gb|AE008402.1|AE008402 Streptococcus pneumoniae R6 section 18 of... 40 8.4
33dbj|AK014817.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.4
34gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete s... 40 8.4
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
36gb|AC123963.4| Macaca mulatta clone CH250-246J11, complete sequence 40 8.4
37gb|AC117471.6| Homo sapiens 3 BAC RP11-558J4 (Roswell Park Cance... 40 8.4
38gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.4
39gb|AF126061.1|AF126061 Streptococcus pneumoniae isolate SP#5 rib... 40 8.4
40gb|AF126060.1|AF126060 Streptococcus pneumoniae isolate ZR1 ribo... 40 8.4
41gb|AF126059.1|AF126059 Streptococcus pneumoniae isolate R6 ribos... 40 8.4
42gb|AC092567.4| Homo sapiens BAC clone CTD-2010B19 from 2, comple... 40 8.4
43dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
44dbj|AB010695.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.4
45dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.4
46gb|AY551025.1| Yponomeuta polystigmellus from Euonymus sieboldia... 40 8.4
47gb|AC115853.8| Mus musculus chromosome 5, clone RP24-273B9, comp... 40 8.4
48dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC... 40 8.4
49emb|AL157400.8| Human DNA sequence from clone RP11-80H5 on chrom... 40 8.4
50gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete... 40 8.4
51emb|AL672243.12| Mouse DNA sequence from clone RP23-343M4 on chr... 40 8.4 
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0044P19, complete sequence
          Length = 176917

 Score =  230 bits (116), Expect = 4e-57
 Identities = 190/212 (89%), Gaps = 2/212 (0%)
 Strand = Plus / Plus

                                                                         
Query: 244   cgacaaatgtttctgaactcagatgagagaagt-ttgagt-ttgccaattaatccaacta 301
             |||||||||||||||||| ||||||||||||   |||||| ||||||||||  | |||||
Sbjct: 52364 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 52423

                                                                         
Query: 302   ccactcattcacatgataggaaatattcgcacaaaactccagatgttccacttgtatcaa 361
             | ||| |||||||||||||||| |||| |||||||||||||| || ||||||||||||||
Sbjct: 52424 caactgattcacatgataggaagtattagcacaaaactccaggtgatccacttgtatcaa 52483

                                                                         
Query: 362   gtgaaatctccgaattttatgcaatatatgaaccagaagtagcaagagaggaaataaggg 421
             |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 52484 gtgaaatctcggaattttatgcaatatatgaaccagaagtagcaggagaggaaataagga 52543

                                             
Query: 422   gatccctcgctgacttcaaaagacatgagtga 453
              || ||||||||||||||  ||||||| ||||
Sbjct: 52544 tattcctcgctgacttcagcagacatgggtga 52575
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  230 bits (116), Expect = 4e-57
 Identities = 190/212 (89%), Gaps = 2/212 (0%)
 Strand = Plus / Plus

                                                                            
Query: 244      cgacaaatgtttctgaactcagatgagagaagt-ttgagt-ttgccaattaatccaacta 301
                |||||||||||||||||| ||||||||||||   |||||| ||||||||||  | |||||
Sbjct: 20739140 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 20739199

                                                                            
Query: 302      ccactcattcacatgataggaaatattcgcacaaaactccagatgttccacttgtatcaa 361
                | ||| |||||||||||||||| |||| |||||||||||||| || ||||||||||||||
Sbjct: 20739200 caactgattcacatgataggaagtattagcacaaaactccaggtgatccacttgtatcaa 20739259

                                                                            
Query: 362      gtgaaatctccgaattttatgcaatatatgaaccagaagtagcaagagaggaaataaggg 421
                |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 20739260 gtgaaatctcggaattttatgcaatatatgaaccagaagtagcaggagaggaaataagga 20739319

                                                
Query: 422      gatccctcgctgacttcaaaagacatgagtga 453
                 || ||||||||||||||  ||||||| ||||
Sbjct: 20739320 tattcctcgctgacttcagcagacatgggtga 20739351
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>dbj|AK099540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032G17, full
           insert sequence
          Length = 2565

 Score =  230 bits (116), Expect = 4e-57
 Identities = 190/212 (89%), Gaps = 2/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 244 cgacaaatgtttctgaactcagatgagagaagt-ttgagt-ttgccaattaatccaacta 301
           |||||||||||||||||| ||||||||||||   |||||| ||||||||||  | |||||
Sbjct: 351 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 292

                                                                       
Query: 302 ccactcattcacatgataggaaatattcgcacaaaactccagatgttccacttgtatcaa 361
           | ||| |||||||||||||||| |||| |||||||||||||| || ||||||||||||||
Sbjct: 291 caactgattcacatgataggaagtattagcacaaaactccaggtgatccacttgtatcaa 232

                                                                       
Query: 362 gtgaaatctccgaattttatgcaatatatgaaccagaagtagcaagagaggaaataaggg 421
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 231 gtgaaatctcggaattttatgcaatatatgaaccagaagtagcaggagaggaaataagga 172

                                           
Query: 422 gatccctcgctgacttcaaaagacatgagtga 453
            || ||||||||||||||  ||||||| ||||
Sbjct: 171 tattcctcgctgacttcagcagacatgggtga 140
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>dbj|AK065065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J20, full
           insert sequence
          Length = 2537

 Score =  230 bits (116), Expect = 4e-57
 Identities = 190/212 (89%), Gaps = 2/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 244 cgacaaatgtttctgaactcagatgagagaagt-ttgagt-ttgccaattaatccaacta 301
           |||||||||||||||||| ||||||||||||   |||||| ||||||||||  | |||||
Sbjct: 351 cgacaaatgtttctgaacccagatgagagaaaacttgagtcttgccaattatgctaacta 292

                                                                       
Query: 302 ccactcattcacatgataggaaatattcgcacaaaactccagatgttccacttgtatcaa 361
           | ||| |||||||||||||||| |||| |||||||||||||| || ||||||||||||||
Sbjct: 291 caactgattcacatgataggaagtattagcacaaaactccaggtgatccacttgtatcaa 232

                                                                       
Query: 362 gtgaaatctccgaattttatgcaatatatgaaccagaagtagcaagagaggaaataaggg 421
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 231 gtgaaatctcggaattttatgcaatatatgaaccagaagtagcaggagaggaaataagga 172

                                           
Query: 422 gatccctcgctgacttcaaaagacatgagtga 453
            || ||||||||||||||  ||||||| ||||
Sbjct: 171 tattcctcgctgacttcagcagacatgggtga 140
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>gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complete sequence
          Length = 158923

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 147    tgtagaagaaacaaccatattt 168
              ||||||||||||||||||||||
Sbjct: 118495 tgtagaagaaacaaccatattt 118516
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>emb|CR388406.7| Zebrafish DNA sequence from clone CH211-288H2 in linkage group 1,
              complete sequence
          Length = 161800

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 584    ttgagctgcaggcagttgtgctgct 608
              ||||||||||||||||| |||||||
Sbjct: 134187 ttgagctgcaggcagttatgctgct 134163
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 374     aattttatgcaatatatgaac 394
               |||||||||||||||||||||
Sbjct: 2987398 aattttatgcaatatatgaac 2987418
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>gb|AC025451.6| Homo sapiens chromosome 5 clone CTD-2141F16, complete sequence
          Length = 136371

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   aagagctacaagatacagatc 191
             |||||||||||||||||||||
Sbjct: 44088 aagagctacaagatacagatc 44068
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>gb|AC156635.2| Mus musculus BAC clone RP24-364K10 from chromosome 9, complete
            sequence
          Length = 187038

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 578  ttcatcttgagctgcaggcag 598
            |||||||||||||||||||||
Sbjct: 1686 ttcatcttgagctgcaggcag 1706
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>gb|AC010432.6|AC010432 Homo sapiens chromosome 5 clone CTD-2202A17, complete sequence
          Length = 148697

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   aagagctacaagatacagatc 191
             |||||||||||||||||||||
Sbjct: 15859 aagagctacaagatacagatc 15839
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>gb|AC127302.3| Mus musculus BAC clone RP23-269P7 from chromosome 9, complete sequence
          Length = 200073

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 578   ttcatcttgagctgcaggcag 598
             |||||||||||||||||||||
Sbjct: 91647 ttcatcttgagctgcaggcag 91667
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>emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-677J5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209111

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   aagaatagaaacaaggcacaa 212
             |||||||||||||||||||||
Sbjct: 57052 aagaatagaaacaaggcacaa 57032
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>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence
          Length = 188836

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 143    gtcctgtagaagaaacaaccatat 166
              ||||||||||||||||||| ||||
Sbjct: 153076 gtcctgtagaagaaacaacaatat 153053
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>gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, complete sequence
          Length = 245404

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    caaccatatttttaagagct 177
              ||||||||||||||||||||
Sbjct: 199151 caaccatatttttaagagct 199132
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     gcctattattacaatatata 66
              ||||||||||||||||||||
Sbjct: 835320 gcctattattacaatatata 835301
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>gb|AC091381.3| Papio anubis clone RP41-468N20, complete sequence
          Length = 156353

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    gcctattattacaatatataatat 70
             ||||||||||| ||||||||||||
Sbjct: 37250 gcctattattataatatataatat 37273
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>gb|AC163238.3| Colobus guereza clone CH272-90I19, complete sequence
          Length = 201245

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     gcctattattacaatatataatat 70
              ||||||||||| ||||||||||||
Sbjct: 115431 gcctattattataatatataatat 115454
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>gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, complete sequence
          Length = 191581

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    caaccatatttttaagagct 177
              ||||||||||||||||||||
Sbjct: 190947 caaccatatttttaagagct 190966
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>ref|XM_977689.1| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 gene (4921505D17Rik),
            mRNA
          Length = 5908

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  acaaaaacaagcaatccatg 228
            ||||||||||||||||||||
Sbjct: 4627 acaaaaacaagcaatccatg 4646
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>ref|XM_621096.3| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 gene (4921505D17Rik),
            mRNA
          Length = 5908

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  acaaaaacaagcaatccatg 228
            ||||||||||||||||||||
Sbjct: 4627 acaaaaacaagcaatccatg 4646
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>ref|XM_907570.2| PREDICTED: Mus musculus RIKEN cDNA 4921505D17 gene (4921505D17Rik),
            mRNA
          Length = 5908

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  acaaaaacaagcaatccatg 228
            ||||||||||||||||||||
Sbjct: 4627 acaaaaacaagcaatccatg 4646
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>gb|BC051701.1| Mus musculus RIKEN cDNA 4921505D17 gene, mRNA (cDNA clone
            IMAGE:4219467), containing frame-shift errors
          Length = 3141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  acaaaaacaagcaatccatg 228
            ||||||||||||||||||||
Sbjct: 2592 acaaaaacaagcaatccatg 2611
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>gb|AC108710.3| Homo sapiens 3p BAC RP11-88I7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186799

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tattacaatatataatatgc 72
              ||||||||||||||||||||
Sbjct: 171608 tattacaatatataatatgc 171627
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 199    gaaacaaggcacaaaaacaagcaa 222
              |||| |||||||||||||||||||
Sbjct: 912878 gaaaaaaggcacaaaaacaagcaa 912901
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>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5,
             complete sequence
          Length = 122916

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 552   gagtgctaacaatgaactca 571
             ||||||||||||||||||||
Sbjct: 48203 gagtgctaacaatgaactca 48222
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>emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 in linkage group 5,
             complete sequence
          Length = 193735

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 552   gagtgctaacaatgaactca 571
             ||||||||||||||||||||
Sbjct: 96176 gagtgctaacaatgaactca 96195
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>gb|AC024890.20| Homo sapiens 3 BAC RP11-389A20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172117

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tattacaatatataatatgc 72
              ||||||||||||||||||||
Sbjct: 169174 tattacaatatataatatgc 169193
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    agtagcaagagaggaaataa 418
              ||||||||||||||||||||
Sbjct: 785385 agtagcaagagaggaaataa 785404
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>gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complete sequence
          Length = 165536

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    aactcagatgagagaagttt 278
              ||||||||||||||||||||
Sbjct: 107499 aactcagatgagagaagttt 107480
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>gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, complete sequence
          Length = 172192

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   atatataatatgcattctta 79
            ||||||||||||||||||||
Sbjct: 7190 atatataatatgcattctta 7171
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 47      gcctattattacaatatataatat 70
               ||||||||||| ||||||||||||
Sbjct: 1302656 gcctattattataatatataatat 1302679
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>gb|AE008402.1|AE008402 Streptococcus pneumoniae R6 section 18 of 184 of the complete genome
          Length = 11941

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  gcacaaaaacaagcaatcca 226
            ||||||||||||||||||||
Sbjct: 1126 gcacaaaaacaagcaatcca 1145
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>dbj|AK014817.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921505D17 product:unclassifiable, full
           insert sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 acaaaaacaagcaatccatg 228
           ||||||||||||||||||||
Sbjct: 542 acaaaaacaagcaatccatg 561
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>gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete sequence
          Length = 151308

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    atatataatatgcattctta 79
             ||||||||||||||||||||
Sbjct: 86913 atatataatatgcattctta 86932
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       aatatataatatgcattctt 78
                ||||||||||||||||||||
Sbjct: 20796872 aatatataatatgcattctt 20796891
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>gb|AC123963.4| Macaca mulatta clone CH250-246J11, complete sequence
          Length = 155432

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     gcctattattacaatatataatat 70
              ||||||||||| ||||||||||||
Sbjct: 129787 gcctattattataatatataatat 129810
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>gb|AC117471.6| Homo sapiens 3 BAC RP11-558J4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 82165

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   tacaatatataatatgcatt 75
            ||||||||||||||||||||
Sbjct: 6214 tacaatatataatatgcatt 6195
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    gcacaaaaacaagcaatcca 226
              ||||||||||||||||||||
Sbjct: 197135 gcacaaaaacaagcaatcca 197154
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>gb|AF126061.1|AF126061 Streptococcus pneumoniae isolate SP#5 ribosomal protein operon,
            partial sequence
          Length = 4255

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  gcacaaaaacaagcaatcca 226
            ||||||||||||||||||||
Sbjct: 1977 gcacaaaaacaagcaatcca 1996
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>gb|AF126060.1|AF126060 Streptococcus pneumoniae isolate ZR1 ribosomal protein operon,
            partial sequence
          Length = 4255

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  gcacaaaaacaagcaatcca 226
            ||||||||||||||||||||
Sbjct: 1977 gcacaaaaacaagcaatcca 1996
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>gb|AF126059.1|AF126059 Streptococcus pneumoniae isolate R6 ribosomal protein operon, partial
            sequence
          Length = 4255

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  gcacaaaaacaagcaatcca 226
            ||||||||||||||||||||
Sbjct: 1977 gcacaaaaacaagcaatcca 1996
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>gb|AC092567.4| Homo sapiens BAC clone CTD-2010B19 from 2, complete sequence
          Length = 163496

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    tttttaagagctacaagata 185
              ||||||||||||||||||||
Sbjct: 144629 tttttaagagctacaagata 144610
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>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0039D04
          Length = 184408

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   aatatataatatgcattctt 78
            ||||||||||||||||||||
Sbjct: 7662 aatatataatatgcattctt 7681
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>dbj|AB010695.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDK4
          Length = 78596

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aaacaaccatatttttaaga 174
             ||||||||||||||||||||
Sbjct: 74280 aaacaaccatatttttaaga 74299
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>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6
          Length = 82952

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  ttcgcacttcaactttctta 133
            ||||||||||||||||||||
Sbjct: 5748 ttcgcacttcaactttctta 5729
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>gb|AY551025.1| Yponomeuta polystigmellus from Euonymus sieboldianus cytochrome
           oxidase subunit II gene, partial cds; mitochondrial
          Length = 1015

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 503 tccagatgcttatattcgtt 522
           ||||||||||||||||||||
Sbjct: 24  tccagatgcttatattcgtt 43
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>gb|AC115853.8| Mus musculus chromosome 5, clone RP24-273B9, complete sequence
          Length = 188562

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    catcttgagctgcaggcagt 599
              ||||||||||||||||||||
Sbjct: 129831 catcttgagctgcaggcagt 129812
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>dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC clone:395N09,
             containing QDPR gene for dihydropteridine reductase,
             complete cds
          Length = 128800

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   aactcagatgagagaagttt 278
             ||||||||||||||||||||
Sbjct: 72561 aactcagatgagagaagttt 72580
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>emb|AL157400.8| Human DNA sequence from clone RP11-80H5 on chromosome 10 Contains the
              PANK1 gene for pantothenate kinase 1, a pantothenate kinase
              1 (PANK1) pseudogene, four novel genes, the 5' end of the
              MPHOSPH1 gene for M-phase phosphoprotein 1, a Homo sapiens
              miR-107-precursor-10 micro RNA and two CpG islands,
              complete sequence
          Length = 148396

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 578    ttcatcttgagctgcaggcagttg 601
              ||||| ||||||||||||||||||
Sbjct: 109259 ttcattttgagctgcaggcagttg 109282
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>gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete sequence
          Length = 239994

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 580    catcttgagctgcaggcagttgtg 603
              ||||| ||||||||||||||||||
Sbjct: 145804 catctggagctgcaggcagttgtg 145827
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>emb|AL672243.12| Mouse DNA sequence from clone RP23-343M4 on chromosome X, complete
             sequence
          Length = 184872

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   acaaaaacaagcaatccatg 228
             ||||||||||||||||||||
Sbjct: 10565 acaaaaacaagcaatccatg 10584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,614,146
Number of Sequences: 3902068
Number of extensions: 6614146
Number of successful extensions: 142541
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142254
Number of HSP's gapped (non-prelim): 283
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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