ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RDH12_HUMAN (Q96NR8) Retinol dehydrogenase 12 (EC 1.1.1.-) (All-... 27 0.92
2CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candid... 30 6.6

>RDH12_HUMAN (Q96NR8) Retinol dehydrogenase 12 (EC 1.1.1.-) (All-trans and 9-cis|
           retinol dehydrogenase)
          Length = 316

 Score = 27.3 bits (59), Expect(2) = 0.92
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -1

Query: 626 GTNDRSKFLRSQLALQLLKNSFGLKVVNVERILKSVTSINV----KEKECSFFMLYVHIV 459
           G N    FL + L L+ LK S   +VVNV  +   +  I       EK  S    Y H  
Sbjct: 145 GVNHLGHFLLTYLLLEQLKVSAPARVVNVSSVAHHIGKIPFHDLQSEKRYSRGFAYCHSK 204

Query: 458 LMDNLLFSSD 429
           L  N+LF+ +
Sbjct: 205 LA-NVLFTRE 213



 Score = 24.3 bits (51), Expect(2) = 0.92
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = -3

Query: 441 LLERRFQKQDRDNRRLAQFSTELFDPDRMHGLEVLRFQGPKQGVVSPARCNAEKACRQW* 262
           LL R F    +  R  AQ S      + +  L    F   K+  VSP   N + A R W 
Sbjct: 246 LLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVSPRARNNKTAERLWN 305

Query: 261 HSCQLI 244
            SC+L+
Sbjct: 306 VSCELL 311



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>CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candidate gene 5|
            protein) (ALL1-fused gene from chromosome 15q14)
            (AF15q14) (D40/AF15q14 protein)
          Length = 2342

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 106  TWAENTVSHHQLPKMRLQFTLTHHLCQ 186
            +W +   + HQLPKM  +F+L  H C+
Sbjct: 2211 SWKKTCTTQHQLPKMLEEFSLVVHHCR 2237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,793,505
Number of Sequences: 219361
Number of extensions: 1751477
Number of successful extensions: 4455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4454
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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