ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188715.1| Oryza sativa (japonica cultivar-group), predic... 170 4e-39
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
3dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
4dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
5emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, compl... 46 0.15
6gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, com... 46 0.15
7emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chr... 46 0.15
8emb|BX927410.11| Zebrafish DNA sequence from clone CH211-51O12 i... 44 0.59
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
10dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
11dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
12dbj|AK072591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.59
13gb|BC077576.1| Xenopus laevis MGC83583 protein, mRNA (cDNA clone... 42 2.3
14gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, comple... 42 2.3
15gb|AC010314.6| Homo sapiens chromosome 5 clone CTB-83L16, comple... 42 2.3
16gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 9.2
17ref|XM_597611.2| PREDICTED: Bos taurus similar to 5-hydroxytrypt... 40 9.2
18gb|AC139755.3| Mus musculus BAC clone RP24-96N20 from chromosome... 40 9.2
19gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome... 40 9.2
20gb|AC145955.3| Gallus gallus chromosome UNK clone CH261-13M13, c... 40 9.2
21emb|AJ131109.1|PAB131109 Picea abies microsatellite RNA, clone P... 40 9.2
22emb|BX511265.13| Zebrafish DNA sequence from clone RP71-45G20 in... 40 9.2
23gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cance... 40 9.2
24gb|AC117244.3| Mus musculus BAC clone RP24-225D10 from chromosom... 40 9.2
25gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosom... 40 9.2
26gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 9.2
27gb|AC125204.4| Mus musculus BAC clone RP23-237H8 from 10, comple... 40 9.2
28emb|AL358213.14| Human DNA sequence from clone RP11-597P7 on chr... 40 9.2
29emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chr... 40 9.2
30gb|AE008914.1| Salmonella typhimurium LT2, section 218 of 220 of... 40 9.2
31emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 40 9.2
32emb|AL603907.12| Mouse DNA sequence from clone RP23-139D10 on ch... 40 9.2
33emb|BX927207.8| Zebrafish DNA sequence from clone DKEY-72K22 in ... 40 9.2
34gb|AC068657.6| Homo sapiens chromosome 5 clone CTB-67I13, comple... 40 9.2
35gb|DQ077518.1| Salmonella enterica subsp. enterica serovar Typhi... 40 9.2
36gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3... 40 9.2
37gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Can... 40 9.2
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
39gb|AC125017.12| Mus musculus chromosome 1, clone RP24-157E23, co... 40 9.2
40emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 ... 40 9.2
41gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 9.2
42dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
43dbj|AK173783.1| Ciona intestinalis cDNA, clone:citb010m17, full ... 40 9.2
44emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 i... 40 9.2
45gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Can... 40 9.2
46emb|CT027588.10| Mouse DNA sequence from clone RP23-461P14 on ch... 40 9.2 
>ref|NM_188715.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1530

 Score =  170 bits (86), Expect = 4e-39
 Identities = 302/374 (80%)
 Strand = Plus / Minus

                                                                        
Query: 292  gcaccttgcaggagatacgacgccttgtttcggaccttggaagcgtagaacctccagtcc 351
            ||||||||||| ||||| || |||||||| || ||||| || || || || |||||||| 
Sbjct: 1484 gcaccttgcagaagataagaagccttgttccgaacctttgaggcatataatctccagtct 1425

                                                                        
Query: 352  gtgcatcctatctgggtcgaacagttccgtagaaaattgcgccaagcgtcgattatcgcg 411
            ||||||||||| ||||| ||||| ||||| ||| |||| |||||||  |  || ||||| 
Sbjct: 1424 gtgcatcctatttgggttgaacaattccgcagataattacgccaagaattaatgatcgca 1365

                                                                        
Query: 412  atcttgtttctgaaagcgtcgctcgagaagagcaggttgtccatcaagactatgtgcacg 471
              ||| | ||| || || || || |||||||| | ||| |||||||| |||| ||  |||
Sbjct: 1364 tgcttatctctaaaggcatcacttgagaagagtaagttatccatcaaaactaggtatacg 1305

                                                                        
Query: 472  tacagcatgaagaagctgcattctttctccttcacatttatcgatgtgactgacttcagg 531
            |||||  |||| ||| |||| ||||| |||||||||||||| ||  |||||||||||| |
Sbjct: 1304 tacagactgaaaaagttgcaatctttatccttcacatttatggacatgactgacttcaag 1245

                                                                        
Query: 532  atcctttcaacattcaccactttaaggccgaagctatttttgagcaactgaagggccagc 591
            ||| | ||||||||  |||| |||||||| ||||||  |||||| || || |||||||||
Sbjct: 1244 atcttctcaacatttgccaccttaaggccaaagctaactttgaggaattgtagggccagc 1185

                                                                        
Query: 592  tggctccttaggaatttgctacggtcgttggttccggtaatgcagtcaacaatccttaga 651
            |||||||||| ||||||||||||||  |  || || || || |||||||||||||||| |
Sbjct: 1184 tggctccttaagaatttgctacggtaatcagtcccagtgatacagtcaacaatccttaaa 1125

                          
Query: 652  caattaagatccat 665
            ||||| || |||||
Sbjct: 1124 caattcaggtccat 1111
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                           
Query: 553     ttaaggccgaagctatttttgagcaactgaagggccagctggctccttaggaatttgcta 612
               |||||||| ||||||  |||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 7806590 ttaaggccaaagctaactttgaggaattgtagggccagctggctccttaagaatttgcta 7806649

                                                                    
Query: 613     cggtcgttggttccggtaatgcagtcaacaatccttagacaattaagatccat 665
               ||||  |  || || || || |||||||||||||||| |||||| || |||||
Sbjct: 7806650 cggtaatcagtcccagtgatacagtcaacaatccttaaacaattcaggtccat 7806702



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 162/203 (79%)
 Strand = Plus / Plus

                                                                           
Query: 343     ctccagtccgtgcatcctatctgggtcgaacagttccgtagaaaattgcgccaagcgtcg 402
               |||||||| ||||||||||| ||||| ||||| ||||| ||| |||| |||||||  |  
Sbjct: 7806291 ctccagtctgtgcatcctatttgggttgaacaattccgcagataattacgccaagaatta 7806350

                                                                           
Query: 403     attatcgcgatcttgtttctgaaagcgtcgctcgagaagagcaggttgtccatcaagact 462
               || |||||   ||| | ||| || || || || |||||||| | ||| |||||||| |||
Sbjct: 7806351 atgatcgcatgcttatctctaaaggcatcacttgagaagagtaagttatccatcaaaact 7806410

                                                                           
Query: 463     atgtgcacgtacagcatgaagaagctgcattctttctccttcacatttatcgatgtgact 522
               | ||  ||||||||  |||| ||| |||| ||||| |||||||||||||| ||  |||||
Sbjct: 7806411 aggtatacgtacagactgaaaaagttgcaatctttatccttcacatttatggacatgact 7806470

                                      
Query: 523     gacttcaggatcctttcaacatt 545
               ||||||| |||| | ||||||||
Sbjct: 7806471 gacttcaagatcttctcaacatt 7806493
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>dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0010K01
          Length = 144404

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                          
Query: 553    ttaaggccgaagctatttttgagcaactgaagggccagctggctccttaggaatttgcta 612
              |||||||| ||||||  |||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 109171 ttaaggccaaagctaactttgaggaattgtagggccagctggctccttaagaatttgcta 109230

                                                                   
Query: 613    cggtcgttggttccggtaatgcagtcaacaatccttagacaattaagatccat 665
              ||||  |  || || || || |||||||||||||||| |||||| || |||||
Sbjct: 109231 cggtaatcagtcccagtgatacagtcaacaatccttaaacaattcaggtccat 109283



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 162/203 (79%)
 Strand = Plus / Plus

                                                                          
Query: 343    ctccagtccgtgcatcctatctgggtcgaacagttccgtagaaaattgcgccaagcgtcg 402
              |||||||| ||||||||||| ||||| ||||| ||||| ||| |||| |||||||  |  
Sbjct: 108872 ctccagtctgtgcatcctatttgggttgaacaattccgcagataattacgccaagaatta 108931

                                                                          
Query: 403    attatcgcgatcttgtttctgaaagcgtcgctcgagaagagcaggttgtccatcaagact 462
              || |||||   ||| | ||| || || || || |||||||| | ||| |||||||| |||
Sbjct: 108932 atgatcgcatgcttatctctaaaggcatcacttgagaagagtaagttatccatcaaaact 108991

                                                                          
Query: 463    atgtgcacgtacagcatgaagaagctgcattctttctccttcacatttatcgatgtgact 522
              | ||  ||||||||  |||| ||| |||| ||||| |||||||||||||| ||  |||||
Sbjct: 108992 aggtatacgtacagactgaaaaagttgcaatctttatccttcacatttatggacatgact 109051

                                     
Query: 523    gacttcaggatcctttcaacatt 545
              ||||||| |||| | ||||||||
Sbjct: 109052 gacttcaagatcttctcaacatt 109074
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>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1066G12
          Length = 136263

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                        
Query: 553  ttaaggccgaagctatttttgagcaactgaagggccagctggctccttaggaatttgcta 612
            |||||||| ||||||  |||||| || || ||||||||||||||||||| ||||||||||
Sbjct: 1536 ttaaggccaaagctaactttgaggaattgtagggccagctggctccttaagaatttgcta 1595

                                                                 
Query: 613  cggtcgttggttccggtaatgcagtcaacaatccttagacaattaagatccat 665
            ||||  |  || || || || |||||||||||||||| |||||| || |||||
Sbjct: 1596 cggtaatcagtcccagtgatacagtcaacaatccttaaacaattcaggtccat 1648



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 162/203 (79%)
 Strand = Plus / Plus

                                                                        
Query: 343  ctccagtccgtgcatcctatctgggtcgaacagttccgtagaaaattgcgccaagcgtcg 402
            |||||||| ||||||||||| ||||| ||||| ||||| ||| |||| |||||||  |  
Sbjct: 1237 ctccagtctgtgcatcctatttgggttgaacaattccgcagataattacgccaagaatta 1296

                                                                        
Query: 403  attatcgcgatcttgtttctgaaagcgtcgctcgagaagagcaggttgtccatcaagact 462
            || |||||   ||| | ||| || || || || |||||||| | ||| |||||||| |||
Sbjct: 1297 atgatcgcatgcttatctctaaaggcatcacttgagaagagtaagttatccatcaaaact 1356

                                                                        
Query: 463  atgtgcacgtacagcatgaagaagctgcattctttctccttcacatttatcgatgtgact 522
            | ||  ||||||||  |||| ||| |||| ||||| |||||||||||||| ||  |||||
Sbjct: 1357 aggtatacgtacagactgaaaaagttgcaatctttatccttcacatttatggacatgact 1416

                                   
Query: 523  gacttcaggatcctttcaacatt 545
            ||||||| |||| | ||||||||
Sbjct: 1417 gacttcaagatcttctcaacatt 1439
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>emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, complete sequence
          Length = 198202

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 91     gctggggactgctatacatgggc 113
              |||||||||||||||||||||||
Sbjct: 188725 gctggggactgctatacatgggc 188703
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>gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, complete sequence
          Length = 94576

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 91    gctggggactgctatacatgggc 113
             |||||||||||||||||||||||
Sbjct: 31654 gctggggactgctatacatgggc 31632
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>emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chromosome 17, complete
              sequence
          Length = 177152

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 91     gctggggactgctatacatgggc 113
              |||||||||||||||||||||||
Sbjct: 170938 gctggggactgctatacatgggc 170916
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>emb|BX927410.11| Zebrafish DNA sequence from clone CH211-51O12 in linkage group 18,
            complete sequence
          Length = 154671

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 5    tacataatgtatatttaatttaatac 30
            |||||||||| |||||||||||||||
Sbjct: 4015 tacataatgtttatttaatttaatac 4040
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 489      gcattctttctccttcacattt 510
                ||||||||||||||||||||||
Sbjct: 26147599 gcattctttctccttcacattt 26147620
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>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062J02
          Length = 151636

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 489    gcattctttctccttcacattt 510
              ||||||||||||||||||||||
Sbjct: 126844 gcattctttctccttcacattt 126865
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>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0453H04
          Length = 175047

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 489   gcattctttctccttcacattt 510
             ||||||||||||||||||||||
Sbjct: 12139 gcattctttctccttcacattt 12160
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>dbj|AK072591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N22, full
           insert sequence
          Length = 2346

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 489 gcattctttctccttcacattt 510
           ||||||||||||||||||||||
Sbjct: 462 gcattctttctccttcacattt 483
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>gb|BC077576.1| Xenopus laevis MGC83583 protein, mRNA (cDNA clone MGC:83583
           IMAGE:5079674), complete cds
          Length = 3940

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 83  ttgacagtgctggggactgct 103
           |||||||||||||||||||||
Sbjct: 422 ttgacagtgctggggactgct 442
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>gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, complete sequence
          Length = 181792

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     acataatgtatatttaattta 26
             |||||||||||||||||||||
Sbjct: 59853 acataatgtatatttaattta 59873
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>gb|AC010314.6| Homo sapiens chromosome 5 clone CTB-83L16, complete sequence
          Length = 124861

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   ccactgccggcaggccttttc 285
             |||||||||||||||||||||
Sbjct: 29820 ccactgccggcaggccttttc 29800
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 404     ttatcgcgatcttgtttctg 423
               ||||||||||||||||||||
Sbjct: 6416792 ttatcgcgatcttgtttctg 6416811
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>ref|XM_597611.2| PREDICTED: Bos taurus similar to 5-hydroxytryptamine receptor 3
            subunit C (LOC519394), mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 438  gaagagcaggttgtccatca 457
            ||||||||||||||||||||
Sbjct: 1098 gaagagcaggttgtccatca 1079
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>gb|AC139755.3| Mus musculus BAC clone RP24-96N20 from chromosome 6, complete sequence
          Length = 192869

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    aggctggttcaaatcagttg 252
              ||||||||||||||||||||
Sbjct: 115818 aggctggttcaaatcagttg 115837
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>gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome 13, complete sequence
          Length = 173020

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    agtccgtgcatcctatctgg 366
              ||||||||||||||||||||
Sbjct: 108438 agtccgtgcatcctatctgg 108457
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>gb|AC145955.3| Gallus gallus chromosome UNK clone CH261-13M13, complete sequence
          Length = 200102

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    ttctttctccttcacattta 511
              ||||||||||||||||||||
Sbjct: 197390 ttctttctccttcacattta 197371
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>emb|AJ131109.1|PAB131109 Picea abies microsatellite RNA, clone PAAC23
          Length = 1694

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 gagaagagcaggttgtccat 455
           ||||||||||||||||||||
Sbjct: 805 gagaagagcaggttgtccat 824
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>emb|BX511265.13| Zebrafish DNA sequence from clone RP71-45G20 in linkage group 9, complete
              sequence
          Length = 183988

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    attcaccctgacacaccact 178
              ||||||||||||||||||||
Sbjct: 175650 attcaccctgacacaccact 175631
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>gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 138925

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 491  attctttctccttcacattt 510
            ||||||||||||||||||||
Sbjct: 4880 attctttctccttcacattt 4899
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>gb|AC117244.3| Mus musculus BAC clone RP24-225D10 from chromosome 17, complete sequence
          Length = 163542

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    ctttctccttcacatttatc 513
              ||||||||||||||||||||
Sbjct: 128128 ctttctccttcacatttatc 128147
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>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete
             sequence
          Length = 165103

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   taggctggttcaaatcagtt 251
             ||||||||||||||||||||
Sbjct: 46886 taggctggttcaaatcagtt 46867
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>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3
             of 3 of the complete sequence
          Length = 209806

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 594   gctccttaggaatttgctac 613
             ||||||||||||||||||||
Sbjct: 12450 gctccttaggaatttgctac 12431
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>gb|AC125204.4| Mus musculus BAC clone RP23-237H8 from 10, complete sequence
          Length = 198473

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 490   cattctttctccttcacatttatc 513
             |||||| |||||||||||||||||
Sbjct: 91220 cattctgtctccttcacatttatc 91197
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>emb|AL358213.14| Human DNA sequence from clone RP11-597P7 on chromosome 10, complete
            sequence
          Length = 57842

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   gttcatgctgcaaaagttca 56
            ||||||||||||||||||||
Sbjct: 8564 gttcatgctgcaaaagttca 8545
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>emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chromosome 13 Contains the
             3' end of the ITGBL1 gene for integrin, beta-like 1 (with
             EGF-like repeat domains), a novel gene, the 3' end of the
             FGF14 gene for fibroblast growth factor 14 and a
             high-mobility group box 1 (HMGB1) pseudogene, complete
             sequence
          Length = 147607

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 594   gctccttaggaatttgctac 613
             ||||||||||||||||||||
Sbjct: 64209 gctccttaggaatttgctac 64190
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>gb|AE008914.1| Salmonella typhimurium LT2, section 218 of 220 of the complete
           genome
          Length = 22694

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 535 ctttcaacattcaccacttt 554
           ||||||||||||||||||||
Sbjct: 102 ctttcaacattcaccacttt 121
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>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    taccactgccggcaggcctt 282
              ||||||||||||||||||||
Sbjct: 272983 taccactgccggcaggcctt 273002
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>emb|AL603907.12| Mouse DNA sequence from clone RP23-139D10 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 226006

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 481    aagaagctgcattctttctc 500
              ||||||||||||||||||||
Sbjct: 137971 aagaagctgcattctttctc 137990
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>emb|BX927207.8| Zebrafish DNA sequence from clone DKEY-72K22 in linkage group 5,
             complete sequence
          Length = 154143

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ttcatgctgcaaaagttcat 57
             ||||||||||||||||||||
Sbjct: 66678 ttcatgctgcaaaagttcat 66697
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>gb|AC068657.6| Homo sapiens chromosome 5 clone CTB-67I13, complete sequence
          Length = 128332

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tatgttgagacttgacagtg 91
             ||||||||||||||||||||
Sbjct: 43978 tatgttgagacttgacagtg 43997
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>gb|DQ077518.1| Salmonella enterica subsp. enterica serovar Typhimurium isolate
           M1852 mutated AFLP fragments T/G-556 and T/A-556
           sequence
          Length = 780

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 535 ctttcaacattcaccacttt 554
           ||||||||||||||||||||
Sbjct: 717 ctttcaacattcaccacttt 736
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>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aatctacataatgtatattt 20
             ||||||||||||||||||||
Sbjct: 60082 aatctacataatgtatattt 60101
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>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 202827

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aatgtatatttaatttaata 29
             ||||||||||||||||||||
Sbjct: 61951 aatgtatatttaatttaata 61970
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 533      tcctttcaacattcaccact 552
                ||||||||||||||||||||
Sbjct: 20245311 tcctttcaacattcaccact 20245330
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>gb|AC125017.12| Mus musculus chromosome 1, clone RP24-157E23, complete sequence
          Length = 189884

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 572    tgagcaactgaagggccagctggctcct 599
              |||| |||||| ||||||||||||||||
Sbjct: 134441 tgagaaactgaggggccagctggctcct 134414
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>emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 in linkage group 1,
             complete sequence
          Length = 121976

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tatatttaatttaatacgta 33
             ||||||||||||||||||||
Sbjct: 36621 tatatttaatttaatacgta 36640
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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
            sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 232  taggctggttcaaatcagtt 251
            ||||||||||||||||||||
Sbjct: 8159 taggctggttcaaatcagtt 8178
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>dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0472F10
          Length = 136076

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 533    tcctttcaacattcaccact 552
              ||||||||||||||||||||
Sbjct: 118617 tcctttcaacattcaccact 118636
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>dbj|AK173783.1| Ciona intestinalis cDNA, clone:citb010m17, full insert sequence
          Length = 1771

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 aagcgtcgattatcgcgatc 414
           ||||||||||||||||||||
Sbjct: 266 aagcgtcgattatcgcgatc 285
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>emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 in linkage group 9,
              complete sequence
          Length = 211682

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    attcaccctgacacaccact 178
              ||||||||||||||||||||
Sbjct: 189086 attcaccctgacacaccact 189105
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>gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172260

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aatgtatatttaatttaata 29
              ||||||||||||||||||||
Sbjct: 160982 aatgtatatttaatttaata 161001
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>emb|CT027588.10| Mouse DNA sequence from clone RP23-461P14 on chromosome 9, complete
              sequence
          Length = 182404

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     ttcattgagtggcattctct 72
              ||||||||||||||||||||
Sbjct: 105662 ttcattgagtggcattctct 105681


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,897,869
Number of Sequences: 3902068
Number of extensions: 5897869
Number of successful extensions: 112042
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111855
Number of HSP's gapped (non-prelim): 183
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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