ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17n06 |
|---|---|
| Clone Library Name | barley_pub |
>PMP22_ARATH (Q9ZS51) Peroxisomal membrane protein PMP22 (22 kDa peroxisomal| membrane protein) Length = 190 Score = 96.7 bits (239), Expect = 2e-20 Identities = 44/73 (60%), Positives = 56/73 (76%) Frame = -1 Query: 434 YYGYVVXKRPFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCW 255 YYG V+ + P+ V+ R+ K Y +VQL+AW F+PVVGWIN++YVPL FRVI+HS A W Sbjct: 112 YYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFW 171 Query: 254 GIFLNLRARXMSL 216 GIFL LRAR M+L Sbjct: 172 GIFLTLRARSMTL 184
>MPV17_DROME (Q9V492) Mpv17-like protein| Length = 168 Score = 45.4 bits (106), Expect = 6e-05 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = -1 Query: 407 PFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNL 237 P ++ R+ YLS+ + +M WP +N ++VPL ++V+ F A W +L++ Sbjct: 108 PIDRIRQRILDSYLSILVRNYMLWPAAQMLNFRFVPLGYQVLYAQFIALVWNCYLSM 164
>SYM1_YEAST (Q06563) Protein SYM1 (Stress-inducible yeast MPV17 protein 1)| Length = 197 Score = 41.6 bits (96), Expect = 9e-04 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = -1 Query: 422 VVXKRPFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFL 243 ++ R F K+++ +Q+ L+ W WP+ IN VPLQ R++ + A W +L Sbjct: 116 IMEGRSFDVAKLKIKEQWWPTLLTNWAVWPLFQAINFSVVPLQHRLLAVNVVAIFWNTYL 175 Query: 242 NLR 234 + + Sbjct: 176 SYK 178
>SYM1_GIBZE (Q4IPX8) Protein SYM1| Length = 175 Score = 41.6 bits (96), Expect = 9e-04 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = -1 Query: 401 KEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 K VK R+ K + + WM WP V IN +PLQ+R+ + A W +L+ Sbjct: 117 KSVKERIDKTWWPALKANWMVWPAVQVINFSLIPLQYRLFFANIIAIGWNSYLS 170
>SYM1_NEUCR (Q7SCY7) Protein sym-1| Length = 190 Score = 38.9 bits (89), Expect = 0.006 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -1 Query: 398 EVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 +VK ++ K Y + WM WP V +N + VPL RV+ + + W +L+ Sbjct: 115 DVKEKLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167
>SYM1_ASHGO (Q754F0) Protein SYM1| Length = 182 Score = 37.7 bits (86), Expect = 0.012 Identities = 15/54 (27%), Positives = 31/54 (57%) Frame = -1 Query: 401 KEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 ++V+IR+ +++ S L+ W+ WP N VP+Q R++ + + W +L+ Sbjct: 121 EDVRIRLSEKWWSTLLANWIVWPAFQLCNFSLVPVQHRLLTVNVLSIFWNTYLS 174
>MPV17_CAEBR (Q60SZ2) Mpv17-like protein| Length = 189 Score = 36.2 bits (82), Expect = 0.036 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRARXMSL 216 ++ + V S+ WP V IN +VPL +RVI+ A W +L+ + + +L Sbjct: 119 KMKNDWYDVYTSSLRLWPAVQLINFYFVPLNYRVILIQVVAFFWNSWLSFKTQTPAL 175
>SYM1_ASPFU (Q4WDZ0) Protein sym1| Length = 196 Score = 35.8 bits (81), Expect = 0.047 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNL 237 ++ + Y + W WP + +N VPLQFRV+ + W FL+L Sbjct: 134 KLERSYWPALKANWTVWPFLQLVNFALVPLQFRVLTVNVLNIGWNCFLSL 183
>PXMP2_RAT (Q07066) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 193 Score = 35.4 bits (80), Expect = 0.062 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 347 WMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFL 243 W W + +IN YVPLQFRV+ + A W +L Sbjct: 154 WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 188
>PXMP2_MOUSE (P42925) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 193 Score = 35.4 bits (80), Expect = 0.062 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 347 WMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFL 243 W W + +IN YVPLQFRV+ + A W +L Sbjct: 154 WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 188
>SYM1_CANGA (Q6FXJ3) Protein SYM1| Length = 210 Score = 34.3 bits (77), Expect = 0.14 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 ++ Q+ + W WP+ +N VPLQ R++ + A W FL+ Sbjct: 140 KIKLQWWDTLKTNWCVWPLFQMVNFSLVPLQHRLLAANVVAIFWNTFLS 188
>MPV17_BRARE (Q5TZ51) Protein Mpv17| Length = 177 Score = 34.3 bits (77), Expect = 0.14 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRARXM 222 ++ + Y +S + WP V N ++PL R+ V A W +L+ +A M Sbjct: 123 KLQRDYTDALISNYYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLSWKANKM 177
>MPV17_XENLA (Q66GV0) Protein Mpv17| Length = 177 Score = 33.9 bits (76), Expect = 0.18 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRA 231 ++ + Y ++ + WP V N ++PL R+ V F A W +L+ +A Sbjct: 123 KLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKA 174
>SYM1_DEBHA (Q6BMY0) Protein SYM1| Length = 206 Score = 33.5 bits (75), Expect = 0.24 Identities = 12/56 (21%), Positives = 28/56 (50%) Frame = -1 Query: 407 PFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 P + + ++ + + + W+ WP N +P+QFR++V + + W +L+ Sbjct: 127 PLQVAREKLHAHWFNTLKTNWVVWPTFQLFNFALIPVQFRLLVVNIFSIGWNCYLS 182
>PXMP2_HUMAN (Q9NR77) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 194 Score = 33.5 bits (75), Expect = 0.24 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -1 Query: 347 WMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFL 243 W W + +IN YVPL+FRV+ + A W +L Sbjct: 155 WRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 189
>YD1E_SCHPO (Q10244) Hypothetical protein C4G9.14 in chromosome I| Length = 221 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/68 (23%), Positives = 32/68 (47%) Frame = -1 Query: 437 FYYGYVVXKRPFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACC 258 F + + + ++ +K K Y + ++ WP V N +VPL +VI + + Sbjct: 146 FLFMGITECKSYERLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMV 205 Query: 257 WGIFLNLR 234 W +L+L+ Sbjct: 206 WTAYLSLK 213
>SYM1_YARLI (Q6CAW5) Protein SYM1| Length = 202 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/44 (34%), Positives = 17/44 (38%) Frame = -1 Query: 374 QYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFL 243 QY WM WP N VP FRV+ + W FL Sbjct: 114 QYWDTLKCGWMIWPAFQLFNFGIVPPNFRVLASNCCGLVWNTFL 157
>SYM1_CANAL (Q59Q43) Protein SYM1| Length = 195 Score = 32.3 bits (72), Expect = 0.52 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = -1 Query: 353 SAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 S W+ WP+ + N +P+QFR++ + + W +L+ Sbjct: 151 SNWLVWPLFQFFNFYLLPVQFRLLAVNIISIGWNTYLS 188
>MPV17_CAEEL (Q7YWV6) Mpv17-like protein| Length = 181 Score = 32.3 bits (72), Expect = 0.52 Identities = 13/46 (28%), Positives = 26/46 (56%) Frame = -1 Query: 377 KQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLN 240 + + ++ ++ WP V +N +VPL +RVI++ A W +L+ Sbjct: 122 EDWFNIYATSLKVWPFVQVVNLCFVPLNYRVILNQVVAFFWNCYLS 167
>SYM1_KLULA (Q6CIY7) Protein SYM1| Length = 195 Score = 32.0 bits (71), Expect = 0.68 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = -1 Query: 434 YYGY--VVXKRPFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDAC 261 YYG ++ + + K ++ + ++ W WP IN VP+ R+ + + Sbjct: 108 YYGVMSILEGKSLVDAKKKIEDNWWPTLVTNWYVWPAFQLINFSLVPVHHRLFSVNIISI 167 Query: 260 CWGIFLNLR 234 W FL+ + Sbjct: 168 FWNAFLSFK 176
>MPV17_RAT (Q5BK62) Protein Mpv17| Length = 176 Score = 32.0 bits (71), Expect = 0.68 Identities = 14/55 (25%), Positives = 26/55 (47%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRARXM 222 ++ + Y ++ + WP V N VPL +R+ V A W +L+ +A + Sbjct: 122 KLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKAHQL 176
>MPV17_HUMAN (P39210) Protein Mpv17| Length = 176 Score = 32.0 bits (71), Expect = 0.68 Identities = 14/55 (25%), Positives = 26/55 (47%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRARXM 222 ++ + Y ++ + WP V N VPL +R+ V A W +L+ +A + Sbjct: 122 KLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176
>SYM1_ASPOR (Q2TXA2) Protein sym1| Length = 173 Score = 31.6 bits (70), Expect = 0.89 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -1 Query: 338 WPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNL 237 WP+V +N VPL++RV+V + + W L++ Sbjct: 134 WPLVQGVNFSIVPLEYRVLVVNLVSLGWNCLLSM 167
>MPV17_MOUSE (P19258) Protein Mpv17 (Mpv-17)| Length = 176 Score = 31.6 bits (70), Expect = 0.89 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRA 231 ++ + Y ++ + WP V N VPL +R+ V A W +L+ +A Sbjct: 122 KLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKA 173
>MPV17_BOVIN (Q2KIN6) Protein Mpv17| Length = 176 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/55 (23%), Positives = 26/55 (47%) Frame = -1 Query: 386 RVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLRARXM 222 ++ + + ++ + WP V N VPL +R+ V A W +L+ +A + Sbjct: 122 KLQRDFPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176
>SYM1_CRYNE (Q5KND6) Protein SYM1| Length = 190 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/59 (23%), Positives = 28/59 (47%) Frame = -1 Query: 410 RPFKEVKIRVXKQYLSVQLSAWMFWPVVGWINHQYVPLQFRVIVHSFDACCWGIFLNLR 234 + F K++ + + + WM + +N VPLQ+R++ + W FL+L+ Sbjct: 114 KDFNAAKVKWHESFFPTLQANWMLFIPFQILNMGLVPLQYRLLAVNAVNIPWNAFLSLQ 172
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +2 Query: 254 PSNMHQSCGQSPETAKARTDGLS-----NQLLAKTSKQTIALTDTVSXP*FSPP*KASSX 418 P + +S + PET KA TDG + N K T A T S P PP A+ Sbjct: 1189 PPFVRKSALEQPETGKASTDGATATDRYNSYNRPRPKATAAPTAASSTP---PPEGATPQ 1245 Query: 419 QHIHN 433 +HN Sbjct: 1246 PGVHN 1250
>ZN282_HUMAN (Q9UDV7) Zinc finger protein 282 (HTLV-I U5RE-binding protein 1)| (HUB-1) Length = 671 Score = 28.5 bits (62), Expect = 7.6 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = +3 Query: 210 LLQRHRSGAKVEKYXPATCIKAVDNHPKLQRHVL-----MVYPTNYWPKHPSRQLH*QIL 374 L+ HRS K Y A C K+ + H L RH + Y + K SR+ H L Sbjct: 533 LIIHHRSHTKERPYECAECEKSFNCHSGLIRHQMTHRGERPYKCSECEKTYSRKEH---L 589 Query: 375 FLHPNFHLLERP 410 H H ERP Sbjct: 590 QNHQRLHTGERP 601 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,446,768 Number of Sequences: 219361 Number of extensions: 1133917 Number of successful extensions: 2398 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2398 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
