ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags17n03 |
|---|---|
| Clone Library Name | barley_pub |
>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor| Length = 392 Score = 94.7 bits (234), Expect = 2e-19 Identities = 53/152 (34%), Positives = 76/152 (50%) Frame = -1 Query: 584 RTLPGQKAGCATXXXXXXXXXXXXLGRRNIRAFSAMDLPMDAPGTPALRGKYNVTAARKL 405 R + G++ CAT LG+ ++RA S +AP KY + AA Sbjct: 249 RKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAP-----MQKYKIAAAGVK 303 Query: 404 SGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLW 225 S + V CH YP+AV+YCH + T Y V L E + + +AVCH +TS W Sbjct: 304 KLSDDKSVVCHKQKYPFAVFYCHKAMMTTVYAVPL----EGENGMRAKAVAVCHKNTSAW 359 Query: 224 SPKNPFFELHKVGPGDVAVCHFLTKLSIIWVS 129 +P + F++ KV PG V VCHFL + ++W S Sbjct: 360 NPNHLAFKVLKVKPGTVPVCHFLPETHVVWFS 391
>Y639_ARATH (O80760) Probable polygalacturonase non-catalytic subunit At1g60390| precursor (Aromatic-rich glycoprotein At1g60390) Length = 624 Score = 69.7 bits (169), Expect = 6e-12 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -1 Query: 401 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM----AVCHLDT 234 G + V+CH YPY +YYCH+ Y L P ++E + A+CH+DT Sbjct: 534 GDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLD------PKSLEKINHGVAICHIDT 587 Query: 233 SLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 123 S WSP + F GPG + VCH++ + + W +D Sbjct: 588 SAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624
>GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subunit precursor| (AroGP1) (Polygalacturonase converter) (PG converter) Length = 630 Score = 68.2 bits (165), Expect = 2e-11 Identities = 29/93 (31%), Positives = 48/93 (51%) Frame = -1 Query: 401 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 222 G ++ V+CH YPY +YYCH+ Y + ++ ++ +A+CH+DTS W Sbjct: 540 GKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADI--LDPNSKVKINHGVAICHVDTSSWG 597 Query: 221 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 123 P + F GPG + VCH++ + + W D Sbjct: 598 PSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630
>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor| Length = 632 Score = 67.0 bits (162), Expect = 4e-11 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = -1 Query: 401 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 222 G ++ V+CH YP +YYCH+ Y + ++ ++ +A+CH+DTS W Sbjct: 542 GKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAICHVDTSSWG 599 Query: 221 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 123 P++ F GPG + VCH++ + + W + D Sbjct: 600 PRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632
>GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP2 precursor| Length = 629 Score = 66.6 bits (161), Expect = 5e-11 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = -1 Query: 401 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 222 G ++ V+CH YP +YYCH+ Y + ++ ++ +A+CH+DTS W Sbjct: 539 GKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAICHVDTSSWG 596 Query: 221 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 123 P++ F GPG + VCH++ + + W + D Sbjct: 597 PRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629
>JP650_ARATH (P92990) Probable polygalacturonase non-catalytic subunit JP650| precursor (Aromatic-rich glycoprotein JP650) Length = 626 Score = 65.9 bits (159), Expect = 9e-11 Identities = 30/93 (32%), Positives = 47/93 (50%) Frame = -1 Query: 401 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 222 G ++ V+CH YPY +YYCH+ Y L +E ++ +A+CH+DTS W Sbjct: 536 GKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADL--LELNSKKKINHGIAICHMDTSSWG 593 Query: 221 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 123 P + F PG + VCH++ + + W D Sbjct: 594 PSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626
>JP630_ARATH (P92982) Probable polygalacturonase non-catalytic subunit JP630| precursor (Aromatic-rich glycoprotein JP630) Length = 622 Score = 63.2 bits (152), Expect = 6e-10 Identities = 29/93 (31%), Positives = 46/93 (49%) Frame = -1 Query: 401 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 222 G ++ V+CH YPY +YYCH+ Y L ++ + +A+CH+DTS W Sbjct: 532 GRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDL--LDPKSKAKINHGIAICHMDTSAWG 589 Query: 221 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 123 + F L PG + VCH++ + + W D Sbjct: 590 ANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622
>EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor| Length = 268 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/101 (32%), Positives = 52/101 (51%) Frame = -1 Query: 434 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 255 +Y V +K+ ++ V CH L + V+ CH T AY+V+L + + + A + Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRETTAYVVSLVASDGTKTKA----L 217 Query: 254 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 132 VCH DT +P+ +E +V PG V VCHF+ + WV Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWV 257
>EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor| Length = 268 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/101 (32%), Positives = 52/101 (51%) Frame = -1 Query: 434 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 255 +Y V +K+ ++ V CH L + V+ CH T AY+V+L + + + A + Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----L 217 Query: 254 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 132 VCH DT +P+ +E +V PG V VCHF+ + WV Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWV 257
>SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1)| Length = 268 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/101 (31%), Positives = 51/101 (50%) Frame = -1 Query: 434 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 255 +Y V +K+ ++ V CH L + V+ CH T AY+V+L + + + A + Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----L 217 Query: 254 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 132 VCH DT +P+ +E +V G V VCHF+ + WV Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWV 257
>EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor| Length = 268 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/101 (31%), Positives = 51/101 (50%) Frame = -1 Query: 434 KYNVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM 255 +Y V +K+ ++ V CH L + V+ CH T AY+V+L + + + A + Sbjct: 165 QYVVEDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----L 217 Query: 254 AVCHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 132 VCH DT +P+ +E +V G V VCHF+ + WV Sbjct: 218 TVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWV 257
>PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor type 22 (EC| 3.1.3.48) (Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP) Length = 802 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 67 HKKTHLGQNLPFYSASTCPSTDTQMMLSLVRKWHTATSPGPTL-CSSKNGFF 219 H T L ++ P++S+S S D++M L K ATSPG L SS FF Sbjct: 525 HLYTSLAED-PYFSSSPPNSADSKMSFDLPEKQDGATSPGALLPASSTTSFF 575
>ZN689_RAT (Q99PJ7) Zinc finger protein 689 (Transcription factor HIT-39)| Length = 500 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +2 Query: 350 PRKGRSGHGRSRPQMMTRRASVQP----SRCTYP*APVSLGHPWVDPWRRTHGC 499 PRKG+ G S+P+++ R+ S P CT+P P H ++ + C Sbjct: 126 PRKGKRGRKPSKPRLIARQTSGGPICPDCGCTFPDLPALESHKCAQNLKKPYPC 179
>ZN671_HUMAN (Q8TAW3) Zinc finger protein 671| Length = 556 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +1 Query: 49 TCMSS--SHKKTHLGQNLPFYSASTCPSTDTQMMLSLVRKWHTATSPGPTLCS 201 +C+S H+K H G+ Y S C TQ +L+R W T P +CS Sbjct: 461 SCISKLIQHQKVHSGEKP--YECSKCGKAFTQRP-NLIRHWKVHTGERPYVCS 510 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,650,472 Number of Sequences: 219361 Number of extensions: 1563999 Number of successful extensions: 4460 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4446 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
