ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17n03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
2dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
5gb|U38791.1|ZMU38791 Zea mays unknown protein mRNA, complete cds 56 1e-04
6dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 44 0.52
7gb|AC132393.4| Mus musculus BAC clone RP23-386K20 from 1, comple... 42 2.0
8gb|AC117693.9| Mus musculus chromosome 1, clone RP23-448D22, com... 40 8.1
9gb|AC117627.16| Mus musculus chromosome 1, clone RP23-116N6, com... 40 8.1
10gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, com... 40 8.1
11emb|BX324209.11| Human DNA sequence from clone RP13-388O5 on chr... 40 8.1
12emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E1... 40 8.1
13ref|XM_794541.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 8.1
14emb|F38006.1|MMTBL1 Mus musculus partial Tbl1 gene 40 8.1
15emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cos... 40 8.1
16gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, compl... 40 8.1
17gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, compl... 40 8.1
18gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, comp... 40 8.1
19dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
20dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
21dbj|AK064437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
22gb|AC133500.3| Mus musculus BAC clone RP24-255M8 from 1, complet... 40 8.1
23gb|AC002100.1|AC002100 Genomic sequence from Human 9q34, complet... 40 8.1
24emb|AL714017.11| Mouse DNA sequence from clone RP23-91C19 on chr... 40 8.1
25gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, com... 40 8.1

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                            
Query: 480      ggcggagaacgcacggatgttacgcctcccaaggagggacgccggcagctcggcgaggga 539
                |||||||||||| |||| ||  ||| |||| ||||| ||||| |  || |||||||| ||
Sbjct: 11160592 ggcggagaacgcgcggacgtcgcgcgtcccgaggagcgacgcggcgaggtcggcgagcga 11160533

                                                        
Query: 540      ctcgagggaggtggcgcagcctgctttctggccggggagc 579
                ||||||||||||||||||||| || |||| ||| ||||||
Sbjct: 11160532 ctcgagggaggtggcgcagccggccttctcgcccgggagc 11160493



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                 
Query: 232      gacgtgtcaaggtggcacacggccatgacctccatcgtcgccggcgagg 280
                |||||||| |||||||||||||| |   |||||||| ||||||||||||
Sbjct: 11160900 gacgtgtccaggtggcacacggcgagcgcctccatcttcgccggcgagg 11160852



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 133      acccagatgatgctcagcttagtgagaaagtggcacacgg 172
                ||||||| |||||| ||||| ||||| |||||||||||||
Sbjct: 11160999 acccagacgatgctgagcttggtgaggaagtggcacacgg 11160960



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 335      tgtggcagtagtacaccgcgtaagggtaggtcaggtcatggcaggtcacgac 386
                ||||||||||| |||| ||||| ||||| |||||||| ||||| | ||||||
Sbjct: 11160773 tgtggcagtagaacacggcgtacgggtacgtcaggtcgtggcacgccacgac 11160722



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 231     tgacgtgtcaaggtggcacacggc 254
               ||||||||| ||||||||||||||
Sbjct: 9873100 tgacgtgtccaggtggcacacggc 9873123



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>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0042E12
          Length = 164688

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                         
Query: 480   ggcggagaacgcacggatgttacgcctcccaaggagggacgccggcagctcggcgaggga 539
             |||||||||||| |||| ||  ||| |||| ||||| ||||| |  || |||||||| ||
Sbjct: 35414 ggcggagaacgcgcggacgtcgcgcgtcccgaggagcgacgcggcgaggtcggcgagcga 35355

                                                     
Query: 540   ctcgagggaggtggcgcagcctgctttctggccggggagc 579
             ||||||||||||||||||||| || |||| ||| ||||||
Sbjct: 35354 ctcgagggaggtggcgcagccggccttctcgcccgggagc 35315



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 232   gacgtgtcaaggtggcacacggccatgacctccatcgtcgccggcgagg 280
             |||||||| |||||||||||||| |   |||||||| ||||||||||||
Sbjct: 35722 gacgtgtccaggtggcacacggcgagcgcctccatcttcgccggcgagg 35674



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 133   acccagatgatgctcagcttagtgagaaagtggcacacgg 172
             ||||||| |||||| ||||| ||||| |||||||||||||
Sbjct: 35821 acccagacgatgctgagcttggtgaggaagtggcacacgg 35782



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 335   tgtggcagtagtacaccgcgtaagggtaggtcaggtcatggcaggtcacgac 386
             ||||||||||| |||| ||||| ||||| |||||||| ||||| | ||||||
Sbjct: 35595 tgtggcagtagaacacggcgtacgggtacgtcaggtcgtggcacgccacgac 35544



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>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                         
Query: 480   ggcggagaacgcacggatgttacgcctcccaaggagggacgccggcagctcggcgaggga 539
             |||||||||||| |||| ||  ||| |||| ||||| ||||| |  || |||||||| ||
Sbjct: 90498 ggcggagaacgcgcggacgtcgcgcgtcccgaggagcgacgcggcgaggtcggcgagcga 90439

                                                     
Query: 540   ctcgagggaggtggcgcagcctgctttctggccggggagc 579
             ||||||||||||||||||||| || |||| ||| ||||||
Sbjct: 90438 ctcgagggaggtggcgcagccggccttctcgcccgggagc 90399



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 232   gacgtgtcaaggtggcacacggccatgacctccatcgtcgccggcgagg 280
             |||||||| |||||||||||||| |   |||||||| ||||||||||||
Sbjct: 90806 gacgtgtccaggtggcacacggcgagcgcctccatcttcgccggcgagg 90758



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 133   acccagatgatgctcagcttagtgagaaagtggcacacgg 172
             ||||||| |||||| ||||| ||||| |||||||||||||
Sbjct: 90905 acccagacgatgctgagcttggtgaggaagtggcacacgg 90866



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 335   tgtggcagtagtacaccgcgtaagggtaggtcaggtcatggcaggtcacgac 386
             ||||||||||| |||| ||||| ||||| |||||||| ||||| | ||||||
Sbjct: 90679 tgtggcagtagaacacggcgtacgggtacgtcaggtcgtggcacgccacgac 90628



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>dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H06, full
            insert sequence
          Length = 1731

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                        
Query: 480  ggcggagaacgcacggatgttacgcctcccaaggagggacgccggcagctcggcgaggga 539
            |||||||||||| |||| ||  ||| |||| ||||| ||||| |  || |||||||| ||
Sbjct: 1078 ggcggagaacgcgcggacgtcgcgcgtcccgaggagcgacgcggcgaggtcggcgagcga 1019

                                                    
Query: 540  ctcgagggaggtggcgcagcctgctttctggccggggagc 579
            ||||||||||||||||||||| || |||| ||| ||||||
Sbjct: 1018 ctcgagggaggtggcgcagccggccttctcgcccgggagc 979



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 232  gacgtgtcaaggtggcacacggccatgacctccatcgtcgccggcgagg 280
            |||||||| |||||||||||||| |   |||||||| ||||||||||||
Sbjct: 1386 gacgtgtccaggtggcacacggcgagcgcctccatcttcgccggcgagg 1338



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 133  acccagatgatgctcagcttagtgagaaagtggcacacgg 172
            ||||||| |||||| ||||| ||||| |||||||||||||
Sbjct: 1485 acccagacgatgctgagcttggtgaggaagtggcacacgg 1446



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 335  tgtggcagtagtacaccgcgtaagggtaggtcaggtcatggcaggtcacgac 386
            ||||||||||| |||| ||||| ||||| |||||||| ||||| | ||||||
Sbjct: 1259 tgtggcagtagaacacggcgtacgggtacgtcaggtcgtggcacgccacgac 1208



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>gb|U38791.1|ZMU38791 Zea mays unknown protein mRNA, complete cds
          Length = 2314

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 334  gtgtggcagtagtacaccgcgtaagggtaggtcaggtcatggca 377
            |||||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 1955 gtgtggcagtagaacacggcgtaggggtacgtcaggtcatggca 1912



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 531  ggcgagggactcgagggaggtggcgcagcctgctttctggccggggagcg 580
            |||||| ||||||||||||||| ||||| | || |||| |||||||||||
Sbjct: 1764 ggcgagagactcgagggaggtgtcgcagtcggccttctcgccggggagcg 1715



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 223  ctccacaatgacgtgtcaaggtggcacacg 252
            |||||||| |||||||| ||||||||||||
Sbjct: 2060 ctccacaacgacgtgtcgaggtggcacacg 2031



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 320     ccgtagggctggatgtgtggca 341
               ||||||||||||||||||||||
Sbjct: 1929287 ccgtagggctggatgtgtggca 1929308



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>gb|AC132393.4| Mus musculus BAC clone RP23-386K20 from 1, complete sequence
          Length = 220050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaaaagacacatttgggccag 90
             |||||||||||||||||||||
Sbjct: 28172 aaaaagacacatttgggccag 28152



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>gb|AC117693.9| Mus musculus chromosome 1, clone RP23-448D22, complete sequence
          Length = 193386

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ataaaaagacacatttgggc 87
             ||||||||||||||||||||
Sbjct: 17698 ataaaaagacacatttgggc 17679



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>gb|AC117627.16| Mus musculus chromosome 1, clone RP23-116N6, complete sequence
          Length = 201995

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     ataaaaagacacatttgggc 87
              ||||||||||||||||||||
Sbjct: 136739 ataaaaagacacatttgggc 136720



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>gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, complete sequence
          Length = 126502

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   gagggactcgagggaggtgg 553
             ||||||||||||||||||||
Sbjct: 69653 gagggactcgagggaggtgg 69634



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>emb|BX324209.11| Human DNA sequence from clone RP13-388O5 on chromosome 9, complete
             sequence
          Length = 58696

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   gcacacggccatgacctcca 265
             ||||||||||||||||||||
Sbjct: 29090 gcacacggccatgacctcca 29071



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>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23
              Contains the 5' end of a novel gene, the C1orf33 gene for
              chromosome 1 open reading frame 33, four novel genes, the
              AKR7A3 gene for aldo-keto reductase family 7, member A3
              (aflatoxin aldehyde reductase), the  AKR7A2 gene for
              aldo-keto reductase family 7, member A2 (aflatoxin aldehyde
              reductase), the 3' end of the CAPZB gene for capping
              protein (actin filament) muscle Z-line, beta and two CpG
              islands, complete sequence
          Length = 154130

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    gcttagtgagaaagtggcac 168
              ||||||||||||||||||||
Sbjct: 145290 gcttagtgagaaagtggcac 145309



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>ref|XM_794541.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC574803 (LOC574803), mRNA
          Length = 634

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 200 gctcaaagaacggattcttcgggctcca 227
           |||||| ||||||||||||||| |||||
Sbjct: 211 gctcaaggaacggattcttcggtctcca 184



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>emb|F38006.1|MMTBL1 Mus musculus partial Tbl1 gene
          Length = 17934

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   agctcacataaaaagacaca 80
            ||||||||||||||||||||
Sbjct: 9616 agctcacataaaaagacaca 9597



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>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11
          Length = 102165

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   acgtgtcaaggtggcacacg 252
             ||||||||||||||||||||
Sbjct: 27951 acgtgtcaaggtggcacacg 27932



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>gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, complete sequence
          Length = 91874

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  ctggatgtgtggcagtagta 347
            ||||||||||||||||||||
Sbjct: 8288 ctggatgtgtggcagtagta 8269



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>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ctggatgtgtggcagtagta 347
             ||||||||||||||||||||
Sbjct: 47641 ctggatgtgtggcagtagta 47660



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>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence
          Length = 186972

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   ctggatgtgtggcagtagta 347
             ||||||||||||||||||||
Sbjct: 30933 ctggatgtgtggcagtagta 30914



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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 231    tgacgtgtcaaggtggcacacggc 254
              ||||||||| ||||||||||||||
Sbjct: 163342 tgacgtgtccaggtggcacacggc 163365



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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   tgacgtgtcaaggtggcacacggc 254
             ||||||||| ||||||||||||||
Sbjct: 69735 tgacgtgtccaggtggcacacggc 69758



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>dbj|AK064437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D10, full
           insert sequence
          Length = 1379

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 231 tgacgtgtcaaggtggcacacggc 254
           ||||||||| ||||||||||||||
Sbjct: 974 tgacgtgtccaggtggcacacggc 951



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>gb|AC133500.3| Mus musculus BAC clone RP24-255M8 from 1, complete sequence
          Length = 133095

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 64     tcacataaaaagacacatttgggc 87
              |||||||||||||||||| |||||
Sbjct: 132380 tcacataaaaagacacatgtgggc 132403



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>gb|AC002100.1|AC002100 Genomic sequence from Human 9q34, complete sequence
          Length = 33769

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  gcacacggccatgacctcca 265
            ||||||||||||||||||||
Sbjct: 9067 gcacacggccatgacctcca 9048



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>emb|AL714017.11| Mouse DNA sequence from clone RP23-91C19 on chromosome X, complete
             sequence
          Length = 240597

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    agctcacataaaaagacaca 80
             ||||||||||||||||||||
Sbjct: 19513 agctcacataaaaagacaca 19494



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>gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, complete sequence
          Length = 172143

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    tcacataaaaagacacatttgggc 87
             |||||||||||||||||| |||||
Sbjct: 48884 tcacataaaaagacacatgtgggc 48907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,749,686
Number of Sequences: 3902068
Number of extensions: 3749686
Number of successful extensions: 66583
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66475
Number of HSP's gapped (non-prelim): 108
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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