ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18c02 |
|---|---|
| Clone Library Name | barley_pub |
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 70.5 bits (171), Expect = 4e-12 Identities = 42/110 (38%), Positives = 66/110 (60%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R S V +VKDLS L ++ S+++IVDN+ Sbjct: 165 LFTASLAKYADPVADLLDRWGVFRARLFRESCVFHR-GNYVKDLSRLGRELSKVIIVDNS 223 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPALYE 292 P S+I P N +P V +D +L+++I P + LS + +V L++ Sbjct: 224 PASYIFHPENAVP-VQSWFDDMTDTELLDLI-PFFEGLSKEEEVYSMLHK 271
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 70.5 bits (171), Expect = 4e-12 Identities = 43/109 (39%), Positives = 65/109 (59%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R S V +VKDLS L ++ S+++IVDN+ Sbjct: 166 LFTASLAKYADPVADLLDRWGVFRARLFRESCVFHR-GNYVKDLSRLGRELSKVIIVDNS 224 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPALY 295 P S+I P N +P V +D +L+++I P + LS + DV L+ Sbjct: 225 PASYIFHPENAVP-VQSWFDDMTDTELLDLI-PFFEGLSREDDVYSMLH 271
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 70.5 bits (171), Expect = 4e-12 Identities = 43/109 (39%), Positives = 65/109 (59%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R S V +VKDLS L ++ S+++IVDN+ Sbjct: 166 LFTASLAKYADPVADLLDRWGVFRARLFRESCVFHR-GNYVKDLSRLGRELSKVIIVDNS 224 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPALY 295 P S+I P N +P V +D +L+++I P + LS + DV L+ Sbjct: 225 PASYIFHPENAVP-VQSWFDDMTDTELLDLI-PFFEGLSREDDVYSMLH 271
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 65.5 bits (158), Expect = 1e-10 Identities = 40/108 (37%), Positives = 60/108 (55%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R S V +VKDLS L + R++I+DN+ Sbjct: 150 LFTASLAKYADPVADLLDKWGAFRARLFRESCVFHR-GNYVKDLSRLGRDLRRVLILDNS 208 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPAL 298 P S++ P N +P + SD +L +++ P + LS DV L Sbjct: 209 PASYVFHPDNAVPVASWFDNM-SDTELHDLL-PFFEQLSRVDDVYSVL 254
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 65.5 bits (158), Expect = 1e-10 Identities = 40/108 (37%), Positives = 60/108 (55%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R S V +VKDLS L + R++I+DN+ Sbjct: 150 LFTASLAKYADPVADLLDKWGAFRARLFRESCVFHR-GNYVKDLSRLGRDLRRVLILDNS 208 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPAL 298 P S++ P N +P + SD +L +++ P + LS DV L Sbjct: 209 PASYVFHPDNAVPVASWFDNM-SDTELHDLL-PFFEQLSRVDDVYSVL 254
>TIM50_MOUSE (Q9D880) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 65.5 bits (158), Expect = 1e-10 Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 2/110 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FT+ A PL+D +D H RL+R +T E HVKD+SCL++ +R+V+VD Sbjct: 192 IFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYME-GHHVKDISCLNRDPARVVVVDCK 250 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPAL 298 +F LQP NG+ P+ +SDD+++ + LK +++ + DVR L Sbjct: 251 KEAFRLQPFNGVALRPWDG--NSDDRVLLDLSAFLKTIALNQVEDVRTVL 298
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 64.3 bits (155), Expect = 3e-10 Identities = 37/101 (36%), Positives = 62/101 (61%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FTA + Y PL+DI+D RL+R + E ++K+LS + + S I+I+DN+ Sbjct: 317 VFTASVSRYGDPLLDILDTDKVIHHRLFREACYNYE-GNYIKNLSQIGRPLSDIIILDNS 375 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ 319 P S+I P + IP + + H D++L+++I PLL+ LSV+ Sbjct: 376 PASYIFHPQHAIPISSWFSDTH-DNELLDII-PLLEDLSVK 414
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 63.5 bits (153), Expect = 5e-10 Identities = 41/108 (37%), Positives = 62/108 (57%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R S V + +VKDLS L + + +I+DN+ Sbjct: 161 LFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGC-YVKDLSRLGRDLRKTLILDNS 219 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPAL 298 P S+I P N +P V +D +L+ +I P+ + LS DV +L Sbjct: 220 PASYIFHPENAVP-VQSWFDDMADTELLNLI-PIFEELSGAEDVYTSL 265
>TIM50_PONPY (Q5RAJ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 63.5 bits (153), Expect = 5e-10 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FT+ A PL+D +D H RL+R +T + HVKD+SCL++ +R+V+VD Sbjct: 192 IFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD-GHHVKDISCLNRDPARVVVVDCK 250 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL 298 +F LQP NG+ P+ +SDD+++ + LK +++ DVR L Sbjct: 251 KEAFRLQPYNGVALRPWDG--NSDDRVLLDLSAFLKTIALNGVEDVRTVL 298
>TIM50_HUMAN (Q3ZCQ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 63.5 bits (153), Expect = 5e-10 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FT+ A PL+D +D H RL+R +T + HVKD+SCL++ +R+V+VD Sbjct: 192 IFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD-GHHVKDISCLNRDPARVVVVDCK 250 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL 298 +F LQP NG+ P+ +SDD+++ + LK +++ DVR L Sbjct: 251 KEAFRLQPYNGVALRPWDG--NSDDRVLLDLSAFLKTIALNGVEDVRTVL 298
>TIM50_BOVIN (Q3SZB3) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 355 Score = 63.5 bits (153), Expect = 5e-10 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FT+ A PL+D +D H RL+R +T + HVKD+SCL++ +R+V+VD Sbjct: 194 IFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMD-GHHVKDISCLNRDPARVVVVDCK 252 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL 298 +F LQP NG+ P+ +SDD+++ + LK +++ DVR L Sbjct: 253 KEAFRLQPYNGVALRPWDG--NSDDRVLLDLSAFLKTIALNGVEDVRTVL 300
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 62.4 bits (150), Expect = 1e-09 Identities = 41/108 (37%), Positives = 62/108 (57%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFTA L YA P+ D++D F+ RL+R + V + +VKDLS L + + VI+DN+ Sbjct: 160 LFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGC-YVKDLSRLGRDLRKTVILDNS 218 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPAL 298 P S+I P N +P V +D +L+ +I P+ + LS DV +L Sbjct: 219 PASYIFHPENAVP-VQSWFDDMADTELLNLI-PVFEELSGTDDVYTSL 264
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 62.4 bits (150), Expect = 1e-09 Identities = 34/99 (34%), Positives = 60/99 (60%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FTA + YA PL+D +D + RL+R + E ++K+LS + + S +I+DN+ Sbjct: 287 VFTASVSRYANPLLDTLDPNGTIHHRLFREACYNYE-GNYIKNLSQIGRPLSETIILDNS 345 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLS 325 P S+I P + +P + + H D++L+++I PLL+ LS Sbjct: 346 PASYIFHPQHAVPISSWFSDTH-DNELLDII-PLLEDLS 382
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/108 (35%), Positives = 61/108 (56%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FTA L YA P++D++D + + RL+R + E VKDLS L + +I+DN+ Sbjct: 217 VFTASLAKYADPVLDMLDHSHVIRHRLFREACCNYE-GNFVKDLSQLGRNLEDSIIIDNS 275 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPAL 298 P S+I P + +P + H D +L+++I P L+HL+ DV L Sbjct: 276 PSSYIFHPSHAVPISSWFNDMH-DMELIDLI-PFLEHLARVPDVSTVL 321
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 60.1 bits (144), Expect = 5e-09 Identities = 39/113 (34%), Positives = 69/113 (61%), Gaps = 5/113 (4%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRF-KLRLYRPSTVTTEYRE--HVKDLSCLSKQFSRIVIV 451 LF++ Y+ + + +D + F L++ V Y++ H+KDLS L++ S+++I+ Sbjct: 236 LFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCV---YKDGVHIKDLSKLNRDLSKVIII 292 Query: 450 DNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL 298 D +P S+ LQP N IP P++ +DD+L+ +I P L++L+ Q +DVRP L Sbjct: 293 DTDPNSYKLQPENAIPMEPWNG--EADDKLVRLI-PFLEYLATQQTKDVRPIL 342
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 59.3 bits (142), Expect = 9e-09 Identities = 27/63 (42%), Positives = 43/63 (68%) Frame = -2 Query: 504 HVKDLSCLSKQFSRIVIVDNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLS 325 HVKDLS L++ ++VI+D++P ++ LQP N IP PF+ G+ DD ++ + P LK L+ Sbjct: 249 HVKDLSNLNRDLRQVVILDDDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPFLKALA 308 Query: 324 VQR 316 +R Sbjct: 309 SER 311
>TIM50_SCHPO (O13636) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 452 Score = 57.4 bits (137), Expect = 3e-08 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FT A+P++D ID ++ + + E + +KDLS L++ SR++++D N Sbjct: 221 IFTRQYLATAKPIIDKIDPYHVSISAVLTRESSKYEKGKVIKDLSYLNRDLSRVIMIDTN 280 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL 298 P S+ QP N I P++ G D +L+ +I PLL+ +++ +DVRP L Sbjct: 281 PESWSKQPDNAIAMAPWT-GNPKDKELVGLI-PLLEFIAIMDIKDVRPVL 328
>TIM50_BRARE (Q6NWD4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 387 Score = 57.0 bits (136), Expect = 4e-08 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FT+ A PL+D ID RL+R +T E HVKD+SCL++ S++++VD Sbjct: 227 IFTSETGMTAYPLIDSIDPQGFVMYRLFRDATRYME-GHHVKDVSCLNRDTSKVIVVDCK 285 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPALYERFH 283 +F LQP NG+ + +S+D+ + + LK ++ DVR L H Sbjct: 286 REAFGLQPFNGLALCKWDG--NSEDRTLYDLAAFLKTIATSGVEDVRSVLENYAH 338
>TIM50_CANGA (Q6FRX4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 485 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/128 (30%), Positives = 73/128 (57%), Gaps = 8/128 (6%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRF-KLRLYRPSTVTTEYRE--HVKDLSCLSKQFSRIVIV 451 LF++ YA + + +D + F L++ V Y++ H+KDLS L++ +++I+ Sbjct: 242 LFSSNYMMYAEKIAEKMDPIHAFISYNLFKEHCV---YKDGVHIKDLSKLNRDLKKVMII 298 Query: 450 DNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPAL---YERF 286 D + S+ LQP N IP P+ +DD+L+ +I P L++++ Q+ DVRP L + + Sbjct: 299 DTDENSYKLQPENAIPMDPWDG--KADDKLLRLI-PFLEYMATQQVEDVRPILKSYHNKR 355 Query: 285 HMPEWFQK 262 +P F++ Sbjct: 356 ELPAEFEQ 363
>TIM50_KLULA (Q6CM45) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 480 Score = 54.3 bits (129), Expect = 3e-07 Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 8/128 (6%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRF-KLRLYRPSTVTTEYRE--HVKDLSCLSKQFSRIVIV 451 LF++ YA + + +D + F L++ + Y++ H+KDLS L++ +++I+ Sbjct: 239 LFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCL---YKDGVHIKDLSKLNRDLGKVLII 295 Query: 450 DNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPALY---ERF 286 D + SF LQP N I P+ +DD+L+ +I P L++L+ Q+ DVRP L + Sbjct: 296 DTDENSFKLQPENAIYLEPWDG--KADDRLLRLI-PFLEYLATQQVSDVRPILKSFPDNK 352 Query: 285 HMPEWFQK 262 ++PE F+K Sbjct: 353 NIPEAFEK 360
>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 493 Score = 53.5 bits (127), Expect = 5e-07 Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Frame = -2 Query: 618 FTAGLEGYARPLVDIIDAHNRF-KLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 FTAG P+++ +D RF L+R S T + + VKDL+ L++ S++V+VD N Sbjct: 272 FTAG------PIIEKLDPDRRFITYTLFRESCRTVDGKL-VKDLNHLNRDLSKVVVVDTN 324 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPAL--YERFHMP 277 P SF L P NGI P+ G+ D +L+ +I P + + + DVR + Y H+P Sbjct: 325 PDSFHLHPENGILVKPWK-GEREDRELIGLI-PFFEAIGIYNIDDVRNTIKAYTGTHIP 381
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 52.4 bits (124), Expect = 1e-06 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 3/102 (2%) Frame = -2 Query: 594 ARPLVDIIDAHNRFK-LRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNNPFSFILQP 418 A P+ + ID + F RL+R ST + + + VKD+S L++ S+++++D NP LQP Sbjct: 289 AAPIAEKIDPYQAFMPYRLFRESTRSVKGKV-VKDISFLNRDPSKVIVLDVNPEHVALQP 347 Query: 417 LNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSV--QRDVRPAL 298 NGI P++ G D L+++I P L+ + + DVRP L Sbjct: 348 ENGIVLQPWN-GSPGDKGLVDMI-PFLESIGIFNPADVRPIL 387
>TIM50_ARATH (Q8VYE2) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 376 Score = 51.2 bits (121), Expect = 2e-06 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +++ +E Y P+ + +D + + +L R +T E +H +DLS L++ +I+ V N Sbjct: 235 VYSDQMEMYVLPVCEKLDPNGYIRYKLARGAT-KYENGKHYRDLSKLNRDPKKILFVSAN 293 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHL--SVQRDVRPAL--YERFHMPE 274 F LQP N +P P+ +DD + + P L+++ + D+RP L +ER + + Sbjct: 294 AFESTLQPENSVPIKPYKL--EADDTALVDLIPFLEYVARNSPADIRPVLASFERKDIAK 351 Query: 273 WFQKHGIPQTDQAT*ELFR---WRR 208 F I + +L + WRR Sbjct: 352 EFIDRSIEYQKRKQGQLGQGRFWRR 376
>TIM50_ASHGO (Q75A73) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 50.4 bits (119), Expect = 4e-06 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 8/126 (6%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRF-KLRLYRPSTVTTEYRE--HVKDLSCLSKQFSRIVIV 451 LF + Y++ +V+ +D F L++ V Y++ H+KDLS L++ + +I+ Sbjct: 235 LFPSNYMVYSKKVVEKLDPIRAFITYNLFKDHCV---YKDGIHIKDLSHLNRDLGKTLII 291 Query: 450 DNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL---YERF 286 D +P S LQ N I P+ +DD L+ I P L++L Q DVRP L +R Sbjct: 292 DTDPNSVKLQMENAILAEPWDG--KADDALLRYI-PFLEYLVTQPINDVRPILNSFKDRH 348 Query: 285 HMPEWF 268 H+PE F Sbjct: 349 HIPEEF 354
>TIM50_CAEEL (Q22647) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 452 Score = 48.9 bits (115), Expect = 1e-05 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -2 Query: 594 ARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNNPFSFILQPL 415 A P+VD D R +L+R T HVKDLS L++ S+++ +D + S L P Sbjct: 302 AAPVVDSFDPKQRIMYKLFRDCTKYMN-GHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPE 360 Query: 414 NGIPCVPFSAGQHSDDQLMEVIFPLLK--HLSVQRDVRPAL--YERFHMP 277 N + VP G D L++ + LLK HLS DVRP L Y ++ P Sbjct: 361 NMLR-VPEWKGNMDDTSLVD-LAELLKTIHLSDAEDVRPMLQYYSQYDDP 408
>TIM50_CAEBR (Q61JS7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 456 Score = 48.9 bits (115), Expect = 1e-05 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -2 Query: 594 ARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNNPFSFILQPL 415 A P+VD D R +L+R T HVKDLS L++ S+++ +D + S L P Sbjct: 306 AAPVVDSFDQKQRIMYKLFRDCTKYMN-GHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPE 364 Query: 414 NGIPCVPFSAGQHSDDQLMEVIFPLLK--HLSVQRDVRPAL--YERFHMP 277 N + VP G D L++ + LLK HLS DVRP L Y ++ P Sbjct: 365 NMLR-VPEWRGNMDDTSLVD-LAELLKTIHLSDAEDVRPMLQYYSQYDDP 412
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 47.8 bits (112), Expect = 3e-05 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Frame = -2 Query: 594 ARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNNPFSFILQPL 415 A PL+D +D + K RL R +T E +H K+L L++ SR+++VD +P++ L P Sbjct: 193 AFPLLDALDPYGYIKYRLVRGATDLVE-GQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPD 251 Query: 414 NGIPCVPFSAGQHSDDQLMEV--IFPLLKHLSVQRDVRPAL--YERFHMP 277 N + + G D QL ++ L+ V DVR L Y +F P Sbjct: 252 NSLVLTKW-LGNDDDVQLFDLTAFLQLIAEHQV-NDVREVLRYYRQFEDP 299
>TIM50_NEUCR (Q874C1) Import inner membrane translocase subunit tim-50,| mitochondrial precursor Length = 540 Score = 47.8 bits (112), Expect = 3e-05 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFT+ A P+V +D + L+R +T + E VKDLS L++ S+++I+D + Sbjct: 293 LFTSVPFANAEPIVRKMDPYRFIMWPLFREATKYKD-GEIVKDLSYLNRDLSKVIIIDTD 351 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPAL--YERFHMPE 274 P QP N I +P G D +L+ ++ P L+ + DVR L +E H+P Sbjct: 352 PKHVRAQPENAI-VLPKWKGDPKDTELVSLV-PFLEFIHTMNFPDVRKVLKSFEGQHIPT 409 Query: 273 WFQK 262 F + Sbjct: 410 EFAR 413
>TIM50_DEBHA (Q6BVY9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 471 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Frame = -2 Query: 501 VKDLSCLSKQFSRIVIVDNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSV 322 VKDLS L++ + V++D S+ +QP N IP P+ DD L+++I P L++L+ Sbjct: 274 VKDLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMKPWDGSY--DDTLVKLI-PFLEYLAT 330 Query: 321 Q--RDVRPAL 298 Q +DVRP L Sbjct: 331 QPVKDVRPIL 340
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 45.8 bits (107), Expect = 1e-04 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 20/142 (14%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LF++ L+ +D ++ + + T E + VKDLS +++ +I+I+D + Sbjct: 237 LFSSQYMANCEKLIMKLDPYHAWFSHVLTREHTTYEDGKLVKDLSLMNRDMGKIIIIDPD 296 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL--YERFHMP- 277 + QP N IP P+ G D +L+++I P L+ L Q DVRP L ++ ++P Sbjct: 297 TGCTMKQPENSIPIEPWK-GTPGDKELVKLI-PFLEWLVSQNVNDVRPILKAFDGTYLPD 354 Query: 276 ---------------EWFQKHG 256 +W+ KHG Sbjct: 355 EFTRREAIAREKFEKDWYAKHG 376
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 12/120 (10%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAH--NRFKLRLYRPSTVTTEYREHVKDLSCL----------S 478 +FTA ++ YA P++D +++ + F R YR V + ++KDLS + S Sbjct: 317 IFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVLRDGVGYIKDLSIVKDSEENGKGSS 376 Query: 477 KQFSRIVIVDNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQRDVRPAL 298 ++I+DN+P S+ + N I + + D L + P L+ + DVR L Sbjct: 377 SSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTDTDLLN--LLPFLEAMRYSTDVRNIL 434
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 40.4 bits (93), Expect = 0.004 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFT+ A ++ +D + + L+R +T + E++KDLS L++ S+++++D Sbjct: 267 LFTSVPSMMADQVLRKLDPYRIIRWPLFREATRYKD-GEYIKDLSYLNRDLSKVILIDTK 325 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL--YERFHMPE 274 LQP N I + G D L+ +I P L++++ DVRP L +E +P Sbjct: 326 EEHARLQPENAI-ILDKWLGDPKDKNLVALI-PFLEYIAGMGVEDVRPVLKSFEGTSIPV 383 Query: 273 WFQK 262 F K Sbjct: 384 EFAK 387
>TIM50_GIBZE (Q4I099) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 525 Score = 39.7 bits (91), Expect = 0.007 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 2/110 (1%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFT P++ +D LYR +T E E VKDLS L++ S+++I+D Sbjct: 282 LFTTTPYATGEPVMRKLDPFRLILWPLYREAT-KFEDGEIVKDLSYLNRDLSKVIIIDTK 340 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPAL 298 QP N I P+ + DD+ + + P L+++ + DVR + Sbjct: 341 AKHVRNQPDNAIILDPWKGDK--DDKNLVNLIPFLEYIHTMQYSDVRKVI 388
>TI50B_DROME (Q9W0S3) Import inner membrane translocase subunit TIM50-B,| mitochondrial precursor Length = 409 Score = 39.3 bits (90), Expect = 0.009 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -2 Query: 588 PLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNNPFSFILQPLNG 409 PLVD +D + RL R ST + HVK+L L++ R+V+VD + S P N Sbjct: 265 PLVDALDPNGCIMYRLVRDST-HFDGGHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNS 323 Query: 408 IPCVPFSAGQHSDDQLMEV 352 +P +G +D L E+ Sbjct: 324 F-SIPRWSGNDNDTTLFEL 341
>TIM50_CANAL (Q59W44) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 469 Score = 38.1 bits (87), Expect = 0.021 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 5/113 (4%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRF-KLRLYRPSTVTTEYREH--VKDLSCLSKQFSRIVIV 451 +F++ + Y+ V+ +D ++ + L+R + Y++ +KDLS L++ + V++ Sbjct: 232 VFSSNSQIYSDKTVNKLDPYHAYISYALFREAC---RYKDGKLIKDLSLLNRDLGKTVMI 288 Query: 450 DNNPFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL 298 D + S LQP N I V GQ D+ + + P L++L+ Q +DVRP L Sbjct: 289 DVDEDSAALQPENSI-IVKKWEGQ--PDEYLISLIPFLEYLATQPVKDVRPIL 338
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 37.4 bits (85), Expect = 0.036 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 LFT+ A ++ +D + + L+R +T + E++KDLS L++ S+++++D Sbjct: 296 LFTSVPSMMADQVLRKLDPYRIIRWPLFREATRYKD-GEYIKDLSYLNRDLSKVILIDTK 354 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQ--RDVRPAL--YERFHMPE 274 LQP N I ++ + D+ + + P L++L+ DVR L +E +P Sbjct: 355 EEHARLQPENAIILDKWNG--NPKDKTLVALIPFLEYLAGMGVDDVRTVLKSFEGQSIPI 412 Query: 273 WFQK 262 F K Sbjct: 413 EFAK 416
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 35.8 bits (81), Expect = 0.10 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Frame = -2 Query: 621 LFTAGLEGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRIVIVDNN 442 +FTA P++D +D + RL R +T + HVK+L L++ ++++VD + Sbjct: 273 VFTAEQGMTVFPILDALDPNGYIMYRLVRDATHFVD-GHHVKNLDNLNRDLKKVIVVDWD 331 Query: 441 PFSFILQPLNGIPCVPFSAGQHSDDQLMEVIFPLLKHLSVQR--DVRPAL--YERFHMP 277 + + P N + G D QL+++I LK ++ DVR L Y +F P Sbjct: 332 ANATKMHPDNTFGLARWH-GNDDDGQLLDLI-AFLKIIAQNNVDDVREVLHYYRQFDDP 388
>CNTF_CHICK (Q02011) Ciliary neurotrophic factor (CNTF) (Growth-promoting| activity) (GPA) Length = 195 Score = 31.2 bits (69), Expect = 2.6 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 180 ATYGVAGT*FFST*TVLRWPDQFEGSHAFGTILAYETFRTRLASHLSAQRDASG 341 A+ VA T V RW +Q + AY FRT LA L QR+ G Sbjct: 46 ASISVAAVDGVPTAAVERWAEQTGTQRLLDNLAAYRAFRTLLAQMLEEQRELLG 99
>VG50_BPML5 (Q05262) Putative adenosylcobalamin-dependent| ribonucleoside-triphosphate reductase (EC 1.17.4.2) (Gp50) Length = 682 Score = 30.8 bits (68), Expect = 3.4 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = -2 Query: 603 EGYARPLVDIIDAHNRFKLRLYRPSTVTTEYREHVKDLSCLSKQFSRI-----VIVDNNP 439 EG+A LVD+ID H YRP TV + + V D+S + Q +++ V P Sbjct: 175 EGWAAALVDLIDTH-------YRPGTV---HYQRVYDVSRIRPQGAKLKTFGGVASGPLP 224 Query: 438 FSFILQPLNGI 406 F+ +LQ + I Sbjct: 225 FAVMLQKVANI 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,577,962 Number of Sequences: 219361 Number of extensions: 1930435 Number of successful extensions: 4198 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4183 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
