ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18c01 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 214 bits (545), Expect = 1e-55 Identities = 99/112 (88%), Positives = 110/112 (98%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVK 407 LYSNFGLL+PYGHEELA+CED+DQVRGVMEKYPPYQ+IF+K+SYGESQMLDKAFYEEEV+ Sbjct: 240 LYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 299 Query: 406 RLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 RL L+FEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 300 RLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 214 bits (545), Expect = 1e-55 Identities = 99/112 (88%), Positives = 110/112 (98%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVK 407 LYSNFGLL+PYGHEELA+CED+DQVRGVMEKYPPYQ+IF+K+SYGESQMLDKAFYEEEV+ Sbjct: 240 LYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 299 Query: 406 RLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 RL L+FEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 300 RLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 110 bits (275), Expect = 3e-24 Identities = 49/108 (45%), Positives = 76/108 (70%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVK 407 LY + GLL+P G +L EDVDQVRG++E Y Y++ F+ + L+ +F+E EV Sbjct: 247 LYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSFFEHEVH 305 Query: 406 RLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 263 R++FE Q+ Y VF+AY++LREQEIRN++WI+EC++QN K +++ + Sbjct: 306 LNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYI 353
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 94.0 bits (232), Expect = 3e-19 Identities = 46/114 (40%), Positives = 78/114 (68%), Gaps = 2/114 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDKAFYEEE 413 L+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ F+E E Sbjct: 240 LFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHE 298 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 94.0 bits (232), Expect = 3e-19 Identities = 46/114 (40%), Positives = 78/114 (68%), Gaps = 2/114 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDKAFYEEE 413 L+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ F+E E Sbjct: 240 LFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHE 298 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 94.0 bits (232), Expect = 3e-19 Identities = 46/114 (40%), Positives = 78/114 (68%), Gaps = 2/114 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDKAFYEEE 413 L+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ F+E E Sbjct: 240 LFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHE 298 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 94.0 bits (232), Expect = 3e-19 Identities = 46/114 (40%), Positives = 78/114 (68%), Gaps = 2/114 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDKAFYEEE 413 L+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ F+E E Sbjct: 240 LFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHE 298 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 92.4 bits (228), Expect = 8e-19 Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 2/114 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDKAFYEEE 413 LY N G ++P G LA +D +QV+ V E Y Y ++F + + G+ + DK F+E E Sbjct: 239 LYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDK-FFEHE 297 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 VK +F QQFH+ VF+AY++L+EQE RN++WI+ECVAQ + ++ D+ + IF Sbjct: 298 VKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKI-DNYIPIF 350
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 92.0 bits (227), Expect = 1e-18 Identities = 46/122 (37%), Positives = 74/122 (60%), Gaps = 14/122 (11%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYG--------------E 449 LY NFG L+P G L+ +D + VR +E Y+S F G E Sbjct: 240 LYPNFGQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDAAGLGGGPSGPGNMGGGGTE 299 Query: 448 SQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHD 269 + L+ FY++E++ +++F +QF YA+ +A+++LREQEIRN+ WI+EC+AQNQK R+++ Sbjct: 300 GKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERINN 359 Query: 268 SV 263 + Sbjct: 360 YI 361
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 89.4 bits (220), Expect = 7e-18 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDKAFYEEE 413 LY G L P G LA +D +QV+ V E Y Y ++F A + G+ + DK F+E E Sbjct: 237 LYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDK-FFEHE 295 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 251 V +F QQFH+ VF++Y++L+EQE RN++WISECVAQ + ++ D+ + IF Sbjct: 296 VNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 348
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 88.2 bits (217), Expect = 2e-17 Identities = 43/103 (41%), Positives = 64/103 (62%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVK 407 +Y +FG L+P+ LA E+ V Y F + S + LD F E+EV+ Sbjct: 236 MYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFDQNS---QKSLDDHFNEKEVE 292 Query: 406 RLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 278 +L+F QQFHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 293 LNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 73.9 bits (180), Expect = 3e-13 Identities = 37/108 (34%), Positives = 62/108 (57%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVK 407 L N G L+P LA +D + VR + Y+ E+ L+ FY+ E++ Sbjct: 241 LLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFL------ETGNLEDHFYQLEME 294 Query: 406 RLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 263 R +F QQF + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R+++ + Sbjct: 295 LCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYI 342
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Frame = -2 Query: 586 LYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQM--LDKAFYEEE 413 ++ G L ++ D D++R V + Y +F + M L+ F E Sbjct: 236 MFPTCGYLPKIALASMSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFLMME 295 Query: 412 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 272 K+ +F QQ+H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 296 AKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +1 Query: 271 HGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHRRPCP 438 HG C SG+ + T S C Q ++SG +VR+T + PHR P Sbjct: 3017 HGSCDSGTIYNNQTGTHES-----ACECCQAAKYSGVSVRLTCEDGTVRPHRVATP 3067
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 30.0 bits (66), Expect = 5.2 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +1 Query: 250 KRSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHR- 426 + SRR H C +GSG S S S S + +S ++ + G G LPPH Sbjct: 524 RHPSRRRHYQCDAGSG-----SDSESCSSSPSSSSSESSEDDGF---FLGERIPLPPHLC 575 Query: 427 RPCPTSD 447 RP P D Sbjct: 576 RPMPAQD 582
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +2 Query: 167 ELIKSAIDCAIIKAGLLYSHMHSNRGRLKDRHDAVMDPVLLVLGNAFGDPHQVPYLLLS* 346 + +++A A+++ L+Y+ G LK ++V V V+G + H VP +L Sbjct: 26 QFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKY 85 Query: 347 PHVRKENSIVEL 382 + + S+ EL Sbjct: 86 MDQKVDMSVTEL 97
>TUP1_YEAST (P16649) Glucose repression regulatory protein TUP1 (Flocculation| suppressor protein) (Repressor AER2) Length = 713 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 433 KAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQE 332 K YEEE+K L+L EQ+ H + R+Q+ Sbjct: 70 KDAYEEEIKHLKLGLEQRDHQIASLTVQQQRQQQ 103
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +1 Query: 319 SSSLSPALVASCTQRKQHSGTAVRMTGAASLLP-PHRRPCPTSDFPHMISLQK*TGMGGT 495 SSS +VA + ++ A+L P P P P +D PH+ + + +G + Sbjct: 1126 SSSSGACMVAPAPRDTPSPTSSYGQQSTATLTPSPPDPPQPPTDIPHLHQMPRRVPLGPS 1185 Query: 496 SPLHHAPGQHLHRQPTLHDH 555 SPL + QP L H Sbjct: 1186 SPLSVS-------QPALSSH 1198
>MET2_ASCIM (P12917) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) Length = 518 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = +1 Query: 250 KRSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCT----QRKQHSGTAVRMTGAASLLP 417 ++ RR S R S++SS AS T R Q SG A + Sbjct: 305 RKGFRRSSTTTSDAPPSPTRTSSTSSTDAITPASTTPLHPSRAQPSGIATPPNSVSDPFR 364 Query: 418 PHRRPCPT 441 P +RPCPT Sbjct: 365 PVKRPCPT 372
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 29.3 bits (64), Expect = 8.8 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +1 Query: 292 SGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGA-ASLLPPHRRPCPTSDFP 453 S +++ S S+ LSPA S T HSG + + + ASL PP P P+S P Sbjct: 131 SPRKLPSSASTFLSPAFPGSQT----HSGPELGLVPSPASLWPPPPSPAPSSTKP 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,822,922 Number of Sequences: 219361 Number of extensions: 1996004 Number of successful extensions: 5147 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5134 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
