ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18b21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 Score = 726 bits (366), Expect = 0.0 Identities = 502/545 (92%), Gaps = 18/545 (3%) Strand = Plus / Minus Query: 20 aacagtacgctcattgtggcagacgcagcaaaccacctagagctaatagtttattcagag 79 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1852 aacagtatgctcattgtggcagacgcagcaaaccacctagagctaatagtttattcagag 1793 Query: 80 tagcaatagcctggccggctgcttcacagtaaccaaaacgacaaacggaa---gtcagaa 136 ||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||| Sbjct: 1792 tagcaatagcctggccggctgcttcacagtaaccaaa-cgacgcacgacaacagtcagaa 1734 Query: 137 cgaattccacagacggaacagcgacagcaaaaatcatcttatcactcgcacagcaccgcg 196 |||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 1733 cgaattacacagacggaacagcgacagcaaa--tcatcttatcactcgcacagcaacgcg 1676 Query: 197 cc------ctcctccagagaatcctcctccgcccgccatgcgagcaggttggcaagcttg 250 || |||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1675 cctgtgccctcctcgagagactcctcctccgcccgccatgcgagcaggttggcaagcttg 1616 Query: 251 ccttccttgaccagagggtggccgctctccacattctcgccctcgaagcagtggaagacg 310 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1615 ccttccttgaccagagggtggccgctctccacattctcg------aagcagtggaagaca 1562 Query: 311 gacctgggcgacccggcggagacagcaacctcttcattcgcggtaaagctctggtagatg 370 ||||||||||||||||| |||||||||| |||||| ||||||| |||||||||||||||| Sbjct: 1561 gacctgggcgacccggcagagacagcaagctcttcgttcgcggcaaagctctggtagatg 1502 Query: 371 aggacgcccccgcaggggagctcctgctccacgatgttgttgcagtcgtatgcctcggcg 430 |||||||| ||||| || |||||||||||||| | ||||||||||||||||||||||||| Sbjct: 1501 aggacgccaccgcatggcagctcctgctccacaacgttgttgcagtcgtatgcctcggcg 1442 Query: 431 tcgagcttcttgccccaggtggcggcgtggccgcggccaccgaagatggtgaccgccaca 490 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 1441 tcgagcttcttgccccaggtggcggcatggccacggccaccgaagatggtgaccgccaca 1382 Query: 491 gagaactctgaagggccgaagcaccggagaaccctcttgacgatgtcgccgtagaccagg 550 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| Sbjct: 1381 gagaactctgaagggccaaagcatcggagaaccctcttgacgatgtcgccataggccagg 1322 Query: 551 gcgga 555 ||||| Sbjct: 1321 gcgga 1317
>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA, complete cds Length = 1386 Score = 708 bits (357), Expect = 0.0 Identities = 476/510 (93%), Gaps = 8/510 (1%) Strand = Plus / Minus Query: 51 accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 110 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320 Query: 111 accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaaaa 169 |||||| |||||||| || ||||||||| ||||||||||| |||| |||||||||||| Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263 Query: 170 tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctccgcccgccat 229 |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203 Query: 230 gcgagcaggttggcaagcttgccttccttgaccagagggtggccgctctccacattctcg 289 ||||| |||||||| |||||||||||||||||||||||||||| | | |||| ||||| Sbjct: 1202 gcgaggaggttggcgagcttgccttccttgaccagagggtggctg---tgcacactctcg 1146 Query: 290 ccctcgaagcagtggaagacggacctgggcgacccggcggagacagcaacctcttcattc 349 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 1145 gcctcgaagcagtggaagacggacctgggcgacccggcagagacagcaacctcttcgttc 1086 Query: 350 gcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttg 409 |||||||||||||||||||||||||||| || |||||||||||||||||||| | |||| Sbjct: 1085 acggtaaagctctggtagatgaggacgcctccacaggggagctcctgctccacaacgttg 1026 Query: 410 ttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggcca 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1025 ttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggcca 966 Query: 470 ccgaagatggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctcttg 529 || ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 965 ccaaagatggtgaccgccgcagagaactctgaagggccaaagcaccggaggaccctcttg 906 Query: 530 acgatgtcgccgtagaccagggcggaggcg 559 ||||||||||||||| |||||||||||||| Sbjct: 905 acgatgtcgccgtaggccagggcggaggcg 876
>ref|XM_473046.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1197 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1025 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 966 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 965 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 906 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 905 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 853
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 13505 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 13446 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 13445 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 13386 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 13385 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 13333 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 13782 aatagcctggctggctgcttcacag 13758
>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase Length = 2036 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1564 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 1505 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 1504 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 1445 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 1444 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 1392 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1841 aatagcctggctggctgcttcacag 1817
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 24892920 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 24892861 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 24892860 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 24892801 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 24892800 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 24892748 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full insert sequence Length = 2063 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 1549 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 1548 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 1489 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 1488 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 1436 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full insert sequence Length = 2059 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 1549 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 1548 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 1489 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 1488 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 1436 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full insert sequence Length = 2711 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 1549 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 1548 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 1489 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 1488 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 1436 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full insert sequence Length = 2063 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 1549 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 1548 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 1489 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 1488 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 1436 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full insert sequence Length = 1217 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 766 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 707 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 706 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 647 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 646 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 594 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1043 aatagcctggctggctgcttcacag 1019
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 81.8 bits (41), Expect = 2e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgcag 415 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 154636 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgcat 154577 Query: 416 tcgtatgcctcggcgtcgagcttcttgccccaggtggcggcgtggccgcggccaccgaag 475 | ||| || || || | ||||| ||| |||| || | || || || | ||||| ||| Sbjct: 154576 ttgtaagcatcagcattgagctcctttgcccatgttccagcatgaccatgcccaccaaag 154517 Query: 476 atggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 ||||| || || ||||||||||| |||||||| ||||||| ||| |||||||| Sbjct: 154516 atggtaacagcaacagagaactccgaagggccaaagcacctgaggaccctctt 154464 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 154913 aatagcctggctggctgcttcacag 154889
>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase Length = 1873 Score = 69.9 bits (35), Expect = 9e-09 Identities = 116/143 (81%) Strand = Plus / Minus Query: 389 agctcctgctccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccag 448 |||||||||||||| |||||||||||||| || |||| || | || ||| ||||| Sbjct: 1358 agctcctgctccaccatgttgttgcagtcatagacctctgcaccaagtgcctttccccat 1299 Query: 449 gtggcggcgtggccgcggccaccgaagatggtgaccgccacagagaactctgaagggccg 508 || |||| ||||| || || ||||||||||| || || || || |||||||| ||||| Sbjct: 1298 gtcccggcatggccacgcccgccgaagatggtcacggcaacggaaaactctgaggggcca 1239 Query: 509 aagcaccggagaaccctcttgac 531 ||||||||||| ||||||||||| Sbjct: 1238 aagcaccggaggaccctcttgac 1216 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||| ||||||||| ||||||||||||| Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 275 ctctccacattctcgccctcgaagcagtggaa 306 |||||||| |||||||| || ||||||||||| Sbjct: 1466 ctctccacgttctcgccgtcaaagcagtggaa 1435
>gb|AY966487.1| Oryza sativa (indica cultivar-group) S-adenosylmethionine decarboxylase mRNA, complete cds Length = 1197 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 414 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1025 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 967 Score = 40.1 bits (20), Expect = 7.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 473 aagatggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 |||||||| || || ||||||||||| | |||||| || |||| ||| |||||||| Sbjct: 908 aagatggtaacagcaacagagaactccgtagggccaaaacacctgaggaccctctt 853
>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds Length = 1560 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 414 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 1115 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 1057 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Minus Query: 473 aagatggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 |||||||| || || ||||||||||| |||||||| || |||| ||| |||||||| Sbjct: 998 aagatggtaacagcaacagagaactccgaagggccaaaacacctgaggaccctctt 943 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 1392 aatagcctggctggctgcttcacag 1368
>gb|AY103590.1| Zea mays PCO098412 mRNA sequence Length = 2400 Score = 69.9 bits (35), Expect = 9e-09 Identities = 116/143 (81%) Strand = Plus / Minus Query: 389 agctcctgctccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccag 448 |||||||||||||| |||||||||||||| || |||| || | || ||| ||||| Sbjct: 1607 agctcctgctccaccatgttgttgcagtcatagacctctgcaccaagtgcctttccccat 1548 Query: 449 gtggcggcgtggccgcggccaccgaagatggtgaccgccacagagaactctgaagggccg 508 || |||| ||||| || || ||||||||||| || || || || |||||||| ||||| Sbjct: 1547 gtcccggcatggccacgcccgccgaagatggtcacggcaacggaaaactctgaggggcca 1488 Query: 509 aagcaccggagaaccctcttgac 531 ||||||||||| ||||||||||| Sbjct: 1487 aagcaccggaggaccctcttgac 1465 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||| ||||||||| ||||||||||||| Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 275 ctctccacattctcgccctcgaagcagtggaa 306 |||||||| |||||||| || ||||||||||| Sbjct: 1715 ctctccacgttctcgccgtcaaagcagtggaa 1684
>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence Length = 2057 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Minus Query: 389 agctcctgctccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccag 448 |||||||||||||| |||||||||||||| || |||| || | || ||| ||||| Sbjct: 1538 agctcctgctccaccatgttgttgcagtcatagacctctgcaccaagtgcctttccccat 1479 Query: 449 gtggcggcgtggccgcggccaccgaagatggtgaccgccacagagaactctgaagggccg 508 || | || ||||| || || ||||||||||| || || || || |||||||| ||||| Sbjct: 1478 gtcccagcatggccacgcccgccgaagatggtcacggcaacggaaaactctgaggggcca 1419 Query: 509 aagcaccggagaaccctcttgac 531 ||||||||||| ||||||||||| Sbjct: 1418 aagcaccggaggaccctcttgac 1396 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 275 ctctccacattctcgccctcgaagcagtggaa 306 |||||||| |||||||| || ||||||||||| Sbjct: 1646 ctctccacgttctcgccgtcaaagcagtggaa 1615
>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence Length = 1866 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 389 agctcctgctccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccag 448 |||||||||||||| |||||||||||||| || |||| || | || ||| ||||| Sbjct: 540 agctcctgctccaccatgttgttgcagtcatagacctctgcaccaagtgcctttccccat 599 Query: 449 gtggcggcgtggccgcggccaccgaagatggtgaccgccacagagaactctgaagggccg 508 || | || ||||| || || ||||||||||| || || || || |||||||| ||||| Sbjct: 600 gtcccagcatggccacgcccgccgaagatggtcacggcaacggaaaactctgaggggcca 659 Query: 509 aagcaccggagaaccctcttgac 531 ||||||||||| ||||||||||| Sbjct: 660 aagcaccggaggaccctcttgac 682 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||| ||||||||| ||||||||||||| Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 275 ctctccacattctcgccctcgaagcagtggaa 306 |||||||| |||||||| || ||||||||||| Sbjct: 432 ctctccacgttctcgccgtcaaagcagtggaa 463
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 61.9 bits (31), Expect = 2e-06 Identities = 53/59 (89%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 356 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 414 ||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||| Sbjct: 13533 aagctctggtagatgagga-gccgccacagggcagctcctgctctaccatgttgttgca 13476 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 28 gctcattgtggcagacgcagcaaaccacctagagct 63 ||||||||||||||||||||| ||||||||||||| Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Minus Query: 473 aagatggtgaccgccacagagaactctgaagggccgaagcaccggagaaccctctt 528 |||||||| || || ||||||||||| |||||||| || |||| ||| |||||||| Sbjct: 13417 aagatggtaacagcaacagagaactccgaagggccaaaacacctgaggaccctctt 13362 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 aatagcctggccggctgcttcacag 108 ||||||||||| ||||||||||||| Sbjct: 13810 aatagcctggctggctgcttcacag 13786
>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene) Length = 1562 Score = 54.0 bits (27), Expect = 5e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 355 aaagctctggtagatgaggacgcccccgcaggggagctcctgctccacga-tgttgttgc 413 |||||||||||| ||||| | || |||||||| |||||||||||||| | |||||| || Sbjct: 111 aaagctctggtaaatgagaagaccaccgcagggcagctcctgctccacaactgttgtagc 52 Query: 414 agtcgtatgcctcggcgtcgagcttcttgccccag 448 |||| || ||||||| || || ||||| |||||| Sbjct: 51 agtcataaacctcggcatcaagtttcttcccccag 17
>ref|XM_466676.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1750 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 1236 gcggccaccaaagatggtaaccgcaacagagaactc 1201
>ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1476_F05.33 mRNA Length = 1982 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 1468 gcggccaccaaagatggtaaccgcaacagagaactc 1433
>emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethionine decarboxylase 2 (adometDC2 gene) Length = 1971 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 1454 gcggccaccaaagatggtaaccgcaacagagaactc 1419
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 24067155 gcggccaccaaagatggtaaccgcaacagagaactc 24067120 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 522 ccctcttgacgatgtcgccgta 543 |||||||||||||||||||||| Sbjct: 34183419 ccctcttgacgatgtcgccgta 34183398 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 agctcctgctccacgatgtt 408 |||||||||||||||||||| Sbjct: 35459486 agctcctgctccacgatgtt 35459505
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 25896 gcggccaccaaagatggtaaccgcaacagagaactc 25861
>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1476_F05 Length = 125426 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 102193 gcggccaccaaagatggtaaccgcaacagagaactc 102158
>dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full insert sequence Length = 1982 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 1468 gcggccaccaaagatggtaaccgcaacagagaactc 1433
>dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E08, full insert sequence Length = 1750 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 1236 gcggccaccaaagatggtaaccgcaacagagaactc 1201
>dbj|AK059503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A07, full insert sequence Length = 1232 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 463 gcggccaccgaagatggtgaccgccacagagaactc 498 ||||||||| |||||||| ||||| ||||||||||| Sbjct: 700 gcggccaccaaagatggtaaccgcaacagagaactc 665
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 gene for S-adenosylmethionine decarboxylase, complete cds Length = 2952 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full insert sequence Length = 2047 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full insert sequence Length = 2002 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full insert sequence Length = 2546 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full insert sequence Length = 2034 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 36 tggcagacgcagcaaaccacctagagc 62 ||||||||||||||||||| ||||||| Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
>ref|XM_960781.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0400) partial mRNA Length = 1224 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 tccacgatgttgttgcagtcgt 419 |||||||||||||||||||||| Sbjct: 88 tccacgatgttgttgcagtcgt 67
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 tccacgatgttgttgcagtcgt 419 |||||||||||||||||||||| Sbjct: 55310 tccacgatgttgttgcagtcgt 55331
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 522 ccctcttgacgatgtcgccgta 543 |||||||||||||||||||||| Sbjct: 110933 ccctcttgacgatgtcgccgta 110912
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 522 ccctcttgacgatgtcgccgta 543 |||||||||||||||||||||| Sbjct: 18692 ccctcttgacgatgtcgccgta 18671
>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tgccttccttgaccagagggt 269 ||||||||||||||||||||| Sbjct: 51033 tgccttccttgaccagagggt 51053
>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12 Length = 240050 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 tccagagaatcctcctccgcc 223 ||||||||||||||||||||| Sbjct: 94892 tccagagaatcctcctccgcc 94912
>gb|AF420239.1|AF420239 Dendrobium crumenatum S-adenosyl-L-methionine decarboxylase (Samdc) mRNA, complete cds Length = 1894 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 467 ccaccgaagatggtgaccgccacagagaa 495 ||||| ||||||||||| ||||||||||| Sbjct: 1425 ccaccaaagatggtgacggccacagagaa 1397
>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds Length = 8881 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 tccagagaatcctcctccgcc 223 ||||||||||||||||||||| Sbjct: 4201 tccagagaatcctcctccgcc 4181
>ref|XM_468482.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1497 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 agctcctgctccacgatgtt 408 |||||||||||||||||||| Sbjct: 1430 agctcctgctccacgatgtt 1411
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 gcctcggcgtcgagcttcttgccc 445 ||||||||| |||||||||||||| Sbjct: 194781 gcctcggcggcgagcttcttgccc 194804
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ctgggcgacccggcggagac 333 |||||||||||||||||||| Sbjct: 276909 ctgggcgacccggcggagac 276890
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gagcaggttggcaagcttgc 251 |||||||||||||||||||| Sbjct: 494503 gagcaggttggcaagcttgc 494484
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 agctcctgctccacgatgtt 408 |||||||||||||||||||| Sbjct: 71007 agctcctgctccacgatgtt 71026
>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17 Length = 24990 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tgcttcacagtaaccaaaac 118 |||||||||||||||||||| Sbjct: 19045 tgcttcacagtaaccaaaac 19064
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 cggcgtggccgcggccaccg 472 |||||||||||||||||||| Sbjct: 1560130 cggcgtggccgcggccaccg 1560149 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,776,263 Number of Sequences: 3902068 Number of extensions: 3776263 Number of successful extensions: 97537 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97078 Number of HSP's gapped (non-prelim): 453 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
