ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CT059_MOUSE (Q8VCL5) Putative transporter C20orf59 homolog 42 0.002
2CT059_HUMAN (Q9BYT1) Putative transporter C20orf59 40 0.005
3PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter 38 0.031
4PICO_DROAN (O61369) Putative inorganic phosphate cotransporter 36 0.091
5YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III 33 0.77
6PI2R_RAT (P43253) Prostacyclin receptor (Prostanoid IP receptor)... 32 2.2
7NU6M_XENLA (P03927) NADH-ubiquinone oxidoreductase chain 6 (EC 1... 31 2.9
8CRTC_NICPL (Q40401) Calreticulin precursor 30 6.5
9CRTC2_ARATH (Q38858) Calreticulin-2 precursor 30 8.5
10HRH3_CAVPO (Q9JI35) Histamine H3 receptor (HH3R) 30 8.5
11YOQ6_CAEEL (P34644) Hypothetical protein ZK512.6 in chromosome III 30 8.5

>CT059_MOUSE (Q8VCL5) Putative transporter C20orf59 homolog|
          Length = 439

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = -1

Query: 665 SNTAGVLAGVFGTAATGYILQ-KGSWDSVFQVAVLLYIVGTVVWNLFSTGERI 510
           +NTAG LAGV G   +GY+++  GSW  VF +  ++  +G   + +F   +R+
Sbjct: 378 ANTAGALAGVVGVCLSGYLIETTGSWTCVFHLVAIISNLGLGTFLVFGKAQRV 430



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>CT059_HUMAN (Q9BYT1) Putative transporter C20orf59|
          Length = 436

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -1

Query: 665 SNTAGVLAGVFGTAATGYILQ-KGSWDSVFQVAVLLYIVGTVVWNLFSTGERI 510
           +NTAG LAGV G    GY+++  GSW  +F +  ++  +G   + +F   +R+
Sbjct: 375 ANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLVFGQAQRV 427



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>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter|
          Length = 529

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = -1

Query: 665 SNTAGVLAGVFGTAATGYILQK------GSWDSVFQVAVLLYIVGTVVWNLFSTGER 513
           +N +  LAG+    A G+++        G W  VF +A  +YI+    +N+F +GER
Sbjct: 434 TNCSANLAGLLAPIAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGER 490



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>PICO_DROAN (O61369) Putative inorganic phosphate cotransporter|
          Length = 483

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -1

Query: 665 SNTAGVLAGVFGTAATGYILQK------GSWDSVFQVAVLLYIVGTVVWNLFSTGER 513
           +N +  LAG+    A G ++        G W  VF +A  +YI+    +N+F +GER
Sbjct: 388 TNCSANLAGLLAPIAAGNLISDPSKPVMGQWQIVFFIAAFVYIICGTFYNIFGSGER 444



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>YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III|
          Length = 493

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 662 NTAGVLAGVFGTAATGYILQKGS---WDSVFQVAVLLYIVGTVVWNLFSTGE 516
           NT   LAG+   A + Y+   G+   W  V  +   +  +G +++++F++GE
Sbjct: 413 NTISALAGIISPAVSSYLTPNGTQEEWQMVLWLTAGILTIGALLFSIFASGE 464



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>PI2R_RAT (P43253) Prostacyclin receptor (Prostanoid IP receptor) (PGI|
           receptor) (Prostaglandin I2 receptor)
          Length = 416

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 401 LSLWKIDLLLVGVHQKRQTSAKSATFSYSGRPWLIRGSSLRSKRGS-TPLSLLCTAEQPP 577
           L  W   L    VH   QT         SGR   +   SL++K G+  PLS   T +  P
Sbjct: 331 LKFWLCCLCARSVHGDLQTPLSRPV---SGRRDTLAPDSLQAKEGNWVPLSTWGTGQVAP 387

Query: 578 ETRYPRSLSEGCS 616
            T  P S  +GCS
Sbjct: 388 LTAVPLSGGDGCS 400



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>NU6M_XENLA (P03927) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 6)
          Length = 170

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 599 GSWDSVFQVAVLLYIVGTVVWNLFSTGERI 510
           GSW  VF V  L+Y++G +VW LF  G  +
Sbjct: 82  GSWSVVFYV--LVYLIGVLVWYLFLGGVEV 109



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>CRTC_NICPL (Q40401) Calreticulin precursor|
          Length = 416

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 25/93 (26%), Positives = 38/93 (40%)
 Frame = +1

Query: 256 LAS*LSQQKFNHQVQPFSVIFTPSIAQTSNAIVQLNLLLKTRVFFLRVSLALEDRFTSCR 435
           L+  + Q+KF     P+S++F P I   S   V   L        ++            +
Sbjct: 121 LSGDVDQKKFGGDT-PYSIMFGPDICGYSTKKVHAILTYNDTNHLIK------------K 167

Query: 436 STPKKTDISKISYFFI*RPSVAYSRILSPVEKR 534
             P +TD     Y FI RP   YS ++  VEK+
Sbjct: 168 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQ 200



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>CRTC2_ARATH (Q38858) Calreticulin-2 precursor|
          Length = 424

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 25/93 (26%), Positives = 38/93 (40%)
 Frame = +1

Query: 256 LAS*LSQQKFNHQVQPFSVIFTPSIAQTSNAIVQLNLLLKTRVFFLRVSLALEDRFTSCR 435
           L+  + Q+KF     P+S++F P I   S   V   L        ++            +
Sbjct: 116 LSGDVDQKKFGGDT-PYSIMFGPDICGYSTKKVHAILTYNGANHLIK------------K 162

Query: 436 STPKKTDISKISYFFI*RPSVAYSRILSPVEKR 534
             P +TD     Y FI RP   YS ++  VEK+
Sbjct: 163 DVPCETDQLTHVYTFILRPDATYSILIDNVEKQ 195



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>HRH3_CAVPO (Q9JI35) Histamine H3 receptor (HH3R)|
          Length = 445

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 662 NTAGVLAGVFGTAATGYILQKGSWDSVFQVAVLLYIVGTVVWN 534
           N +G LAG    AA G      +W +V    + L IV TV+ N
Sbjct: 11  NASGALAGEAAAAAGGARTFSAAWTAVLAALMALLIVATVLGN 53



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>YOQ6_CAEEL (P34644) Hypothetical protein ZK512.6 in chromosome III|
          Length = 576

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 665 SNTAGVLAGVFGTAATGYIL--QKGSWDSVFQVAVLLYIVGTVVWNLFSTGE 516
           SN  G LAG+     T       K  W SVF +A L++  G   + ++++GE
Sbjct: 444 SNGIGTLAGLTCPFVTEAFTAHSKHGWTSVFLLASLIHFTGVTFYAVYASGE 495


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,950,653
Number of Sequences: 219361
Number of extensions: 1992784
Number of successful extensions: 5097
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5097
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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