ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17m18 |
|---|---|
| Clone Library Name | barley_pub |
>PMP22_ARATH (Q9ZS51) Peroxisomal membrane protein PMP22 (22 kDa peroxisomal| membrane protein) Length = 190 Score = 73.9 bits (180), Expect = 1e-13 Identities = 32/44 (72%), Positives = 38/44 (86%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRARAMSL 286 W F+PVVGWIN++YVPL FRVI+HS VA WGIFL LRAR+M+L Sbjct: 141 WTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184
>SYM1_GIBZE (Q4IPX8) Protein SYM1| Length = 175 Score = 37.4 bits (85), Expect = 0.014 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 WM WP V IN +PLQ+R+ + +A W +L+ Sbjct: 135 WMVWPAVQVINFSLIPLQYRLFFANIIAIGWNSYLS 170
>MPV17_CAEBR (Q60SZ2) Mpv17-like protein| Length = 189 Score = 37.0 bits (84), Expect = 0.018 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -2 Query: 408 WPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRARAMSLK 283 WP V IN +VPL +RVI+ VA W +L+ + + +L+ Sbjct: 135 WPAVQLINFYFVPLNYRVILIQVVAFFWNSWLSFKTQTPALE 176
>SYM1_ASPFU (Q4WDZ0) Protein sym1| Length = 196 Score = 36.6 bits (83), Expect = 0.024 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNL 307 W WP + +N VPLQFRV+ + + W FL+L Sbjct: 147 WTVWPFLQLVNFALVPLQFRVLTVNVLNIGWNCFLSL 183
>SYM1_CANGA (Q6FXJ3) Protein SYM1| Length = 210 Score = 36.2 bits (82), Expect = 0.031 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 W WP+ +N VPLQ R++ + VA W FL+ Sbjct: 153 WCVWPLFQMVNFSLVPLQHRLLAANVVAIFWNTFLS 188
>PXMP2_RAT (Q07066) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 193 Score = 35.8 bits (81), Expect = 0.041 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFL 313 W W + +IN YVPLQFRV+ + A W +L Sbjct: 154 WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 188
>PXMP2_MOUSE (P42925) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 193 Score = 35.8 bits (81), Expect = 0.041 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFL 313 W W + +IN YVPLQFRV+ + A W +L Sbjct: 154 WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 188
>SYM1_NEUCR (Q7SCY7) Protein sym-1| Length = 190 Score = 35.4 bits (80), Expect = 0.054 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 WM WP V +N + VPL RV+ + ++ W +L+ Sbjct: 132 WMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167
>SYM1_YEAST (Q06563) Protein SYM1 (Stress-inducible yeast MPV17 protein 1)| Length = 197 Score = 34.7 bits (78), Expect = 0.092 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLR 304 W WP+ IN VPLQ R++ + VA W +L+ + Sbjct: 141 WAVWPLFQAINFSVVPLQHRLLAVNVVAIFWNTYLSYK 178
>MPV17_CAEEL (Q7YWV6) Mpv17-like protein| Length = 181 Score = 34.3 bits (77), Expect = 0.12 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -2 Query: 408 WPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 WP V +N +VPL +RVI++ VA W +L+ Sbjct: 135 WPFVQVVNLCFVPLNYRVILNQVVAFFWNCYLS 167
>MPV17_DROME (Q9V492) Mpv17-like protein| Length = 168 Score = 34.3 bits (77), Expect = 0.12 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNL 307 +M WP +N ++VPL ++V+ +A W +L++ Sbjct: 128 YMLWPAAQMLNFRFVPLGYQVLYAQFIALVWNCYLSM 164
>SYM1_ASPOR (Q2TXA2) Protein sym1| Length = 173 Score = 33.9 bits (76), Expect = 0.16 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = -2 Query: 408 WPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNL 307 WP+V +N VPL++RV+V + V+ W L++ Sbjct: 134 WPLVQGVNFSIVPLEYRVLVVNLVSLGWNCLLSM 167
>PXMP2_HUMAN (Q9NR77) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 194 Score = 33.9 bits (76), Expect = 0.16 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFL 313 W W + +IN YVPL+FRV+ + A W +L Sbjct: 155 WRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 189
>SYM1_CANAL (Q59Q43) Protein SYM1| Length = 195 Score = 33.5 bits (75), Expect = 0.20 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 W+ WP+ + N +P+QFR++ + ++ W +L+ Sbjct: 153 WLVWPLFQFFNFYLLPVQFRLLAVNIISIGWNTYLS 188
>YD1E_SCHPO (Q10244) Hypothetical protein C4G9.14 in chromosome I| Length = 221 Score = 32.7 bits (73), Expect = 0.35 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLR 304 ++ WP V N +VPL +VI + V+ W +L+L+ Sbjct: 176 YILWPAVQLFNFTFVPLVLQVIFANAVSMVWTAYLSLK 213
>SYM1_DEBHA (Q6BMY0) Protein SYM1| Length = 206 Score = 32.3 bits (72), Expect = 0.45 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 W+ WP N +P+QFR++V + + W +L+ Sbjct: 147 WVVWPTFQLFNFALIPVQFRLLVVNIFSIGWNCYLS 182
>MPV17_RAT (Q5BK62) Protein Mpv17| Length = 176 Score = 32.0 bits (71), Expect = 0.59 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRARAM 292 + WP V N VPL +R+ V VA W +L+ +A + Sbjct: 135 YYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKAHQL 176
>MPV17_HUMAN (P39210) Protein Mpv17| Length = 176 Score = 32.0 bits (71), Expect = 0.59 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRARAM 292 + WP V N VPL +R+ V VA W +L+ +A + Sbjct: 135 YYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176
>MPV17_BOVIN (Q2KIN6) Protein Mpv17| Length = 176 Score = 32.0 bits (71), Expect = 0.59 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRARAM 292 + WP V N VPL +R+ V VA W +L+ +A + Sbjct: 135 YYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176
>MPV17_BRARE (Q5TZ51) Protein Mpv17| Length = 177 Score = 32.0 bits (71), Expect = 0.59 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRARAM 292 + WP V N ++PL R+ V VA W +L+ +A M Sbjct: 136 YYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLSWKANKM 177
>SYM1_YARLI (Q6CAW5) Protein SYM1| Length = 202 Score = 32.0 bits (71), Expect = 0.59 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFL 313 WM WP N VP FRV+ + W FL Sbjct: 123 WMIWPAFQLFNFGIVPPNFRVLASNCCGLVWNTFL 157
>MPV17_MOUSE (P19258) Protein Mpv17 (Mpv-17)| Length = 176 Score = 31.6 bits (70), Expect = 0.78 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRA 301 + WP V N VPL +R+ V VA W +L+ +A Sbjct: 135 YYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKA 173
>MPV17_XENLA (Q66GV0) Protein Mpv17| Length = 177 Score = 30.8 bits (68), Expect = 1.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLRA 301 + WP V N ++PL R+ V VA W +L+ +A Sbjct: 136 YYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKA 174
>SYM1_KLULA (Q6CIY7) Protein SYM1| Length = 195 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLR 304 W WP IN VP+ R+ + ++ W FL+ + Sbjct: 139 WYVWPAFQLINFSLVPVHHRLFSVNIISIFWNAFLSFK 176
>SYM1_ASHGO (Q754F0) Protein SYM1| Length = 182 Score = 29.6 bits (65), Expect = 2.9 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLN 310 W+ WP N VP+Q R++ + ++ W +L+ Sbjct: 139 WIVWPAFQLCNFSLVPVQHRLLTVNVLSIFWNTYLS 174
>SYLA_AQUAE (O66680) Leucyl-tRNA synthetase alpha subunit (EC 6.1.1.4)| (Leucine--tRNA ligase alpha subunit) (LeuRS) Length = 634 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -2 Query: 321 IFLNLRARAMSLKQSXTFSWCXTLHHGSNLAGEQ---GWCLLCNIPLI 187 IFL + R ++ +++ +WC H + LA EQ G C C P++ Sbjct: 138 IFLKMLERGIAYRKTAKVNWCP--HDQTVLANEQVIEGKCWRCGTPIV 183
>SYM1_CRYNE (Q5KND6) Protein SYM1| Length = 190 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 417 WMFWPVVGWINHQYVPLQFRVIVHSXVAXCWGIFLNLR 304 WM + +N VPLQ+R++ + V W FL+L+ Sbjct: 135 WMLFIPFQILNMGLVPLQYRLLAVNAVNIPWNAFLSLQ 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,431,720 Number of Sequences: 219361 Number of extensions: 931969 Number of successful extensions: 1744 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1726 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1744 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
