ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18b12 |
|---|---|
| Clone Library Name | barley_pub |
>UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g15410| Length = 421 Score = 147 bits (372), Expect = 2e-35 Identities = 75/135 (55%), Positives = 101/135 (74%), Gaps = 2/135 (1%) Frame = -2 Query: 606 NVIKRHGDYEEAARPRSSFQGVGRTLGGSSADESPAPAPVTQEPHSAPR-SIGIVVDDSQ 430 ++++R ++ E +P++ FQGVGRTLG S + S AP + + AP S G+VVD + Sbjct: 286 DLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAA 345 Query: 429 PFTSIQLRLADGTRMVARFNLHHTVGDIRSFIDASRPGAARPYQLQT-GFPPKQLTDPTQ 253 P TSIQLRLADGTR+V+RFN HHTV D+R FIDASRPG ++ YQL T GFPPKQLT+ Q Sbjct: 346 PTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQ 405 Query: 252 TVDQAGLKNSVIMQK 208 T++QAG+ N+V++QK Sbjct: 406 TIEQAGIANAVVIQK 420
>NSF1C_HUMAN (Q9UNZ2) NSFL1 cofactor p47 (p97 cofactor p47)| Length = 370 Score = 97.1 bits (240), Expect = 4e-20 Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 4/129 (3%) Frame = -2 Query: 579 EEAARPRSSFQ---GVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQL 409 E+ +P+ +F+ G G+ LG ++ +P Q + A S I++D+S+P T+IQ+ Sbjct: 241 EDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQI 300 Query: 408 RLADGTRMVARFNLHHTVGDIRSFIDASRPG-AARPYQLQTGFPPKQLTDPTQTVDQAGL 232 RLADG R+V +FN H + DIR FI +RP AA + L T FP K+L D +QT+ +A L Sbjct: 301 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANL 360 Query: 231 KNSVIMQKM 205 N+VI+Q++ Sbjct: 361 LNAVIVQRL 369
>NSF1C_RAT (O35987) NSFL1 cofactor p47 (p97 cofactor p47) (XY body-associated| protein XY40) Length = 370 Score = 93.6 bits (231), Expect = 4e-19 Identities = 50/129 (38%), Positives = 80/129 (62%), Gaps = 4/129 (3%) Frame = -2 Query: 579 EEAARPRSSFQ---GVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQL 409 E+ +P+ +F+ G G+ LG ++ +P Q + A S I++++++P T+IQ+ Sbjct: 241 EDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQI 300 Query: 408 RLADGTRMVARFNLHHTVGDIRSFIDASRPG-AARPYQLQTGFPPKQLTDPTQTVDQAGL 232 RLADG R+V +FN H + DIR FI +RP AA + L T FP K+L D QT+ +A L Sbjct: 301 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANL 360 Query: 231 KNSVIMQKM 205 N+VI+Q++ Sbjct: 361 LNAVIVQRL 369
>NSF1C_MOUSE (Q9CZ44) NSFL1 cofactor p47 (p97 cofactor p47)| Length = 370 Score = 93.6 bits (231), Expect = 4e-19 Identities = 50/129 (38%), Positives = 80/129 (62%), Gaps = 4/129 (3%) Frame = -2 Query: 579 EEAARPRSSFQ---GVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQL 409 E+ +P+ +F+ G G+ LG ++ +P Q + A S I++++++P T+IQ+ Sbjct: 241 EDFVKPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQI 300 Query: 408 RLADGTRMVARFNLHHTVGDIRSFIDASRPG-AARPYQLQTGFPPKQLTDPTQTVDQAGL 232 RLADG R+V +FN H + DIR FI +RP AA + L T FP K+L D QT+ +A L Sbjct: 301 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANL 360 Query: 231 KNSVIMQKM 205 N+VI+Q++ Sbjct: 361 LNAVIVQRL 369
>UBX3_SCHPO (Q9UT81) UBX domain-containing protein 3| Length = 410 Score = 70.5 bits (171), Expect = 4e-12 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 15/148 (10%) Frame = -2 Query: 606 NVIKRHGDYEEAARPRSSFQGVGRTLG-------------GSSADESPAPA-PVTQEPHS 469 +V+ +H E+ P F G G+ LG G D S + + P+ +P+S Sbjct: 264 DVVVQHRMDEDYVAPFKPFSGKGQRLGSTYMQPRMSQMPGGLYTDTSTSSSVPINVKPNS 323 Query: 468 APRSIGIVVDDSQPFTSIQLRLADGTRMVARFNLHHTVGDIRSFIDASRPGAARPYQLQT 289 + +D+++P T IQ+RL++G R V NL HT+ DI + A PG + L Sbjct: 324 TTPHASLQIDENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSPG---NFILSV 380 Query: 288 GFPPKQL-TDPTQTVDQAGLKNSVIMQK 208 FP K L DP+ TV+ A LKN+ ++QK Sbjct: 381 PFPAKTLEDDPSVTVEAASLKNASLVQK 408
>UBXD4_HUMAN (P68543) UBX domain-containing protein 4| Length = 259 Score = 63.9 bits (154), Expect = 4e-10 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Frame = -2 Query: 552 FQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQLRLADGTRMVARF 373 F G G LG SA E + + +++ +P T+IQ+ LA+G R+V +F Sbjct: 133 FSGQGHRLG--SATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQKF 190 Query: 372 NLHHTVGDIRSFIDASRPGAAR--PYQLQTGFPPKQLTDPTQTVDQAGLKNSVIMQKM 205 N+ H V I+ FI+ + G+ R P+ L T P +L D T T+++A L+N+VI+Q++ Sbjct: 191 NITHRVSHIKDFIEKYQ-GSQRSPPFSLATALPVLRLLDETLTLEEADLQNAVIIQRL 247
>UBXD4_MOUSE (Q99KJ0) UBX domain-containing protein 4| Length = 258 Score = 62.8 bits (151), Expect = 8e-10 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Frame = -2 Query: 552 FQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQLRLADGTRMVARF 373 F G G LG ++ V + S ++ + ++ +P T IQ+ LA+G R V RF Sbjct: 134 FSGQGHRLGSATPRIVSKAKSVEVDNKSTLSAVSL--NNLEPITRIQIWLANGERTVQRF 191 Query: 372 NLHHTVGDIRSFIDASRPGAAR--PYQLQTGFPPKQLTDPTQTVDQAGLKNSVIMQKM 205 N+ H V I+ FI+ + G+ R P+ L T P + D T T+++A LKN+VI+Q++ Sbjct: 192 NVSHRVSHIKDFIEKYQ-GSQRSPPFALATALPFLRFLDETLTLEEADLKNAVIIQRL 248
>UBX1_YEAST (P34223) UBX domain-containing protein 1 (Suppressor of high-copy| PP1 protein) Length = 423 Score = 52.8 bits (125), Expect = 8e-07 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 6/145 (4%) Frame = -2 Query: 624 GQLFTSNVIKRHGD-YEEAARPRSSFQGVGRTLGGSSADES-PAPAPVTQEPHSAPRSIG 451 GQ NV K+ + Y+ R F G G+ LG ES PA P + P + + + Sbjct: 281 GQEVEVNVYKKLDESYKAPTRKLGGFSGQGQRLGSPIPGESSPAEVPKNETPAAQEQPM- 339 Query: 450 IVVDDSQPF---TSIQLRLADGTRMVARFNLHHTVGDIRSFIDAS-RPGAARPYQLQTGF 283 D++P TSIQ+R A+G R V N TV + + ++ +R + L F Sbjct: 340 ---PDNEPKQGDTSIQIRYANGKREVLHCNSTDTVKFLYEHVTSNANTDPSRNFTLNYAF 396 Query: 282 PPKQLTDPTQTVDQAGLKNSVIMQK 208 P K +++ T+ A L NSV++Q+ Sbjct: 397 PIKPISNDETTLKDADLLNSVVVQR 421
>U33K_MOUSE (Q922Y1) UBA/UBX 33.3 kDa protein| Length = 297 Score = 40.4 bits (93), Expect = 0.004 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Frame = -2 Query: 579 EEAARPRSSFQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQLRLA 400 ++A R + VG + D P P+ +QEP + D + IQ+RL Sbjct: 171 DKAERAKKYGGSVGSRSSPPATDPGPVPSSPSQEPPTKRE-----YDQCR----IQVRLP 221 Query: 399 DGTRMVARFNLHHTVGDIRSFIDASR---PGAAR-PYQLQTGFPPKQLT--DPTQTVDQA 238 DGT + F + +R +++ R PG + P QL +GFP + + D + + + Sbjct: 222 DGTSLTQTFRAREQLAAVRLYVELHRGEEPGQDQDPVQLLSGFPRRAFSEADMERPLQEL 281 Query: 237 GLKNSVIM 214 GL S ++ Sbjct: 282 GLVPSAVL 289
>UBX7_YEAST (P38349) UBX domain-containing protein 7| Length = 436 Score = 39.3 bits (90), Expect = 0.010 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = -2 Query: 465 PRSIGIVVDDSQPFTS----IQLRLADGTRMVARFNLHHTVGDIRSFIDASRPGAARPYQ 298 P + + D+Q S +Q+R+ DG + FN T+ D+R ++D +R PY Sbjct: 199 PLDVHDYIKDAQKLHSSKCVLQIRMTDGKTLKHEFNSSETLNDVRKWVDVNRTDGDCPYS 258 Query: 297 LQTGFP 280 G P Sbjct: 259 FHRGIP 264
>UBX5_YEAST (Q06682) UBX domain-containing protein 5| Length = 500 Score = 37.0 bits (84), Expect = 0.048 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Frame = -2 Query: 423 TSIQLRLADGTRMVARFN-LHHTVGDIRSFIDASRPGAARPYQLQTGFPPKQLTDP-TQT 250 T IQ+R DG+R+V RFN L TV I I G A + L D T Sbjct: 420 TRIQIRTGDGSRLVRRFNALEDTVRTIYEVIKTEMDGFADSRFTLNDHQREDLIDKLNMT 479 Query: 249 VDQAGLKNSVIM 214 + AGLKNS ++ Sbjct: 480 IADAGLKNSSLL 491
>UBX2_SCHPO (O14048) UBX domain-containing protein 2| Length = 427 Score = 36.6 bits (83), Expect = 0.063 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -2 Query: 423 TSIQLRLADGTRMVARFNLHHTVGDIRSFIDASRPGA-ARPYQLQTGFPPKQL-TDPTQT 250 T IQ+R+ +G R + RF+L V + +++ GA +P+ L F K L T T Sbjct: 354 TRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLT--FQRKSLWTSLDST 411 Query: 249 VDQAGLKNSVI 217 + +AG++N+ + Sbjct: 412 IKEAGIQNTAL 422
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 34.3 bits (77), Expect = 0.31 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -1 Query: 562 PIILPGCW*NPWG--IFSR*ESCTSSRDARAPQCSQVNWHS 446 P++ PGC P G + S + SSR + P C+Q +WHS Sbjct: 205 PLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQGDWHS 245
>NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)| (NFI-B) (NF-I/B) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 561 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -2 Query: 576 EAARPRSSFQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPF-TSIQLRLA 400 + ++P SS Q VG+ G + +P+P P SA R + + + D++P TS + A Sbjct: 412 QTSQPNSSGQVVGKVPGHFTPVLAPSPHP------SAVRPVTLTMTDTKPITTSTEAYTA 465 Query: 399 DGTRMVARF 373 GT +R+ Sbjct: 466 SGTSQASRY 474
>NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)| (NFI-B) (NF-I/B) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 560 Score = 31.6 bits (70), Expect = 2.0 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -2 Query: 576 EAARPRSSFQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPF-TSIQLRLA 400 + ++P SS Q VG+ G + +P+P HSA R + + + D++P TS + A Sbjct: 411 QTSQPNSSGQVVGKVPGHFTPVLAPSPH------HSAVRPVTLTMTDTKPITTSTEAYTA 464 Query: 399 DGTRMVARF 373 GT R+ Sbjct: 465 SGTSQANRY 473
>VCIP1_HUMAN (Q96JH7) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1222 Score = 31.2 bits (69), Expect = 2.6 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Frame = -2 Query: 549 QGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTS----IQLRLADGTRMV 382 +G RT+ S+ + P+ AP T P AP S P TS I++ DG + + Sbjct: 740 KGQPRTVSPSTIRDGPSSAPAT--PTKAPYS---------PTTSKEKKIRITTNDGRQSM 788 Query: 381 ARFNLHHTVGDIRSFIDASRPGAARPYQ--LQTGFPPKQLTDPTQTVDQAGLKNSVI 217 T +++ I +R PY ++ GFPPK+L P QAG++ + Sbjct: 789 VTLKSSTTFFELQESI--AREFNIPPYLQCIRYGFPPKELMPP-----QAGMEKEPV 838
>Y087_METJA (Q57552) Putative ABC transporter permease protein MJ0087| Length = 349 Score = 31.2 bits (69), Expect = 2.6 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 1/111 (0%) Frame = +2 Query: 206 IFCMITEFLSPAWSTVCVGSVSCLGGKPVCN**GRAAPGRDASMKDLMSPTVW*RL-NRA 382 I +IT FLS ++ +CVG + V G + + ++ P ++ + + Sbjct: 19 IILLITLFLSSIYA-LCVGDYKLTVNQVVNALMGYGKDDINLVIWNIRLPRIFAAIISGM 77 Query: 383 TMRVPSANLSCIDVNGCESSTTMPIDLGALWGSCVTGAGAGLSSAEDPPRV 535 ++ V A + CI N S TM I GA++G+C G AE R+ Sbjct: 78 SLAVAGAVMQCILRNPLASPFTMGISHGAMFGACFAIIMFGFGGAESTGRI 128
>VCIP1_RAT (Q8CF97) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1221 Score = 31.2 bits (69), Expect = 2.6 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Frame = -2 Query: 549 QGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTS----IQLRLADGTRMV 382 +G RT+ S+ + P+ AP T P AP S P TS I++ DG + + Sbjct: 739 KGQPRTVSPSTIRDGPSSAPAT--PTKAPYS---------PTTSKEKKIRITTNDGRQSM 787 Query: 381 ARFNLHHTVGDIRSFIDASRPGAARPYQ--LQTGFPPKQLTDPTQTVDQAGLKNSVI 217 T +++ I +R PY ++ GFPPK+L P QAG++ + Sbjct: 788 VTLKSSTTFFELQESI--AREFNIPPYLQCIRYGFPPKELMPP-----QAGMEKEPV 837
>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)| Length = 892 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 513 DESPAPAPVTQEPHSAPRSIGIVVDDSQPFTS 418 D PAP +QEPH P G++ +S+PF + Sbjct: 413 DPHPAPPRTSQEPHQNPH--GVIPSESKPFVA 442
>TOP2_PEA (O24308) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| (PsTopII) Length = 1462 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -2 Query: 585 DYEEAARPRSSFQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTSIQLR 406 D+EE + + + GR +A ++PA AP RS+G Q + L+ Sbjct: 1297 DFEEVQQKAAPVKKGGRKPAAQNAKKAPAKAPAKAPAAPKKRSVGTKQSAGQKLLTDMLQ 1356 Query: 405 LADGT 391 A+GT Sbjct: 1357 PAEGT 1361
>ATOH1_HUMAN (Q92858) Atonal protein homolog 1 (Helix-loop-helix protein hATH-1)| Length = 354 Score = 30.8 bits (68), Expect = 3.5 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 17/98 (17%) Frame = -2 Query: 576 EAARPRSSFQGVG----RTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDD--------- 436 EAA PR G G R+ GG+S+ +SP P V ++ G+VVD+ Sbjct: 91 EAAAPRDEVDGRGELVRRSSGGASSSKSPGPVKVREQ--LCKLKGGVVVDELGCSRQRAP 148 Query: 435 -SQPFTSI--QLRLADGTRMVARFN-LHHTVGDIRSFI 334 S+ + Q RLA R R + L+H +R+ I Sbjct: 149 SSKQVNGVQKQRRLAANARERRRMHGLNHAFDQLRNVI 186
>UNC52_CAEEL (Q06561) Basement membrane proteoglycan precursor (Perlecan homolog)| (Uncoordinated protein 52) Length = 3375 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = +3 Query: 450 CQLTW--EHCGALASRELVQDSHLLKIPQGFYQHPGRMI 560 CQ+TW E G + Q + LKIPQ H GR I Sbjct: 1255 CQITWHREQLGGPLPHGVYQTGNALKIPQSQLHHAGRYI 1293
>ATOH1_PANTR (Q5IS79) Atonal protein homolog 1| Length = 356 Score = 30.8 bits (68), Expect = 3.5 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 17/98 (17%) Frame = -2 Query: 576 EAARPRSSFQGVG----RTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDD--------- 436 EAA PR G G R+ GG+S+ +SP P V ++ G+VVD+ Sbjct: 93 EAAAPRDEVDGRGELVRRSSGGASSSKSPGPVKVREQ--LCKLKGGVVVDELGCSRQRAP 150 Query: 435 -SQPFTSI--QLRLADGTRMVARFN-LHHTVGDIRSFI 334 S+ + Q RLA R R + L+H +R+ I Sbjct: 151 SSKQVNGVQKQRRLAANARERRRMHGLNHAFDQLRNVI 188
>VCIP1_MOUSE (Q8CDG3) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1220 Score = 30.8 bits (68), Expect = 3.5 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Frame = -2 Query: 549 QGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGIVVDDSQPFTS----IQLRLADGTRMV 382 +G RT+ S+ + P+ AP T P AP S P TS I++ DG + + Sbjct: 739 KGQPRTVSPSTIRDGPSSAPAT--PTKAPYS---------PTTSKEKKIRITTNDGRQSM 787 Query: 381 ARFNLHHTVGDIRSFIDASRPGAARPYQ--LQTGFPPKQLTDPTQTVDQAGLKNSVI 217 T +++ I +R PY ++ GFPPK+L P QAG++ + Sbjct: 788 VTLKPSTTFFELQESI--AREFNIPPYLQCIRYGFPPKELMPP-----QAGMEKEPV 837
>IMPE2_DROME (P29681) 20-hydroxyecdysone protein precursor (20-HE)| Length = 466 Score = 30.0 bits (66), Expect = 5.9 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = -2 Query: 621 QLFTSNVIKRHGDYEEAARPRSS----FQGVGRTLGGSSADESPAPAPVTQ 481 Q F +NV + + AA P QG+ LGG+ +PA AP TQ Sbjct: 340 QQFVNNVFGGNNNATAAAPPAQQSGNPLQGIINFLGGNRPQNAPAAAPATQ 390
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 30.0 bits (66), Expect = 5.9 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 9/142 (6%) Frame = -2 Query: 627 EGQLFTSNVIKRHGDYEEAARPRSSFQGVGRTLGGSSADESPAPAPVTQEPHSAPRSIGI 448 +G+ S + EEA+ P+ + QG + S ++E+ AP E P+S Sbjct: 44 DGKAEKSRQTAKKARVEEASTPKVNKQGRSEEISESESEETNAPKKTKTEELPRPQSPSD 103 Query: 447 VVDDSQPFTSIQLRLADGTRMVARFNLH-----HTVGDIRSFIDAS---RPGAARPYQLQ 292 + DS S+ + R + + N ++ G + + D+S G ARPY Sbjct: 104 L--DSLDGRSLNDDGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPP 161 Query: 291 TGFPPK-QLTDPTQTVDQAGLK 229 FPP Q D T +A + Sbjct: 162 PLFPPSPQPPDSTPRQPEASFE 183
>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 863 Score = 30.0 bits (66), Expect = 5.9 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Frame = -2 Query: 588 GDYEEAARPRSSFQGVGRTLGGS-----SADESPAPAPVTQEPHSAPRSIGIVVDDSQPF 424 G YE+A P + + G+ + SP P ++P P +IG++ D + Sbjct: 440 GWYEQAGTPSVTIETAYDAAAGALTLTLTQSTSPTPGQPDKKPLPIPIAIGLLAADGRVL 499 Query: 423 TSIQLRLADGTRMVARFN 370 ++ L D +M R++ Sbjct: 500 RDTEIVLLDQAQMTVRWD 517
>G3PA_CHLRE (P50362) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) Length = 374 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = +2 Query: 329 ASMKDLMSPTVW*RLNRATMRVPSANLSCIDVNGCESSTTMPIDLGALWGSCVTGAGAGL 508 A L+ P++ +LN +RVP+ +S +D+ T ++ A + G G+ Sbjct: 251 AKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGV 310 Query: 509 SSAEDPPRV 535 ED P V Sbjct: 311 LHVEDAPLV 319
>G3PA_GRAVE (P30724) Glyceraldehyde-3-phosphate dehydrogenase, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase) Length = 416 Score = 29.6 bits (65), Expect = 7.7 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2 Query: 344 LMSPTVW*RLNRATMRVPSANLSCIDVNGCESSTTMPIDLGALWGSCVTGAGAGLSSAED 523 L+ PT+ +LN +RVP+ N+S DV S T ++ G+ G+ D Sbjct: 299 LVVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSD 358 Query: 524 PPRV 535 P V Sbjct: 359 EPLV 362
>CHEB_NITEU (Q820K0) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 358 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -2 Query: 189 AGSVAQNVFPRHH*ISAVEWFIMSIRYCTLHATSNVLVVLPINVSGVYIHIHI 31 +GS+ Q PRHH IS + I+ A +VL+ LP + G+ I H+ Sbjct: 148 SGSIVQ--MPRHHGISTEKLIIIGASTGGTEAIKDVLIHLPPDCPGILITQHM 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,084,187 Number of Sequences: 219361 Number of extensions: 2174505 Number of successful extensions: 7113 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 6756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7095 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
