ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104019.1| Zea mays PCO121780 mRNA sequence 174 2e-40
2ref|XM_472780.1| Oryza sativa (japonica cultivar-group), predic... 155 2e-34
3gb|BT017837.1| Zea mays clone EL01N0509G01.c mRNA sequence 155 2e-34
4emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 155 2e-34
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 155 2e-34
7dbj|AK069067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
8gb|AY108276.1| Zea mays PCO140301 mRNA sequence 98 4e-17
9gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Can... 42 2.2
10gb|AC004845.2| Homo sapiens PAC clone RP4-635O5 from 7, complete... 42 2.2
11ref|XM_645366.1| Entamoeba histolytica HM-1:IMSS heat shock prot... 42 2.2
12gb|AC087761.6| Homo sapiens chromosome 15, clone RP11-2E17, comp... 42 2.2
13gb|AC012337.8| Homo sapiens chromosome , clone RP11-119O22, comp... 42 2.2
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
15dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 42 2.2
17gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Can... 42 2.2
18gb|M84652.1|ENHHSP70A Entamoeba heat shock protein (Hsp70) mRNA,... 42 2.2
19gb|AC117559.7| Mus musculus chromosome 5, clone RP24-170C14, com... 40 8.6
20gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, co... 40 8.6
21gb|AC103615.8| Mus musculus chromosome 5, clone RP24-174D16, com... 40 8.6
22emb|AL356789.16| Human DNA sequence from clone RP5-1076L12 on ch... 40 8.6
23emb|AL139004.11| Human DNA sequence from clone RP11-398O19 on ch... 40 8.6
24gb|AC008602.8| Homo sapiens chromosome 5 clone CTB-107J24, compl... 40 8.6
25gb|AC093208.2| Homo sapiens chromosome 5 clone CTC-493D22, compl... 40 8.6
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
27gb|AC010103.10|AC010103 Homo sapiens clone RP11-508H21, complete... 40 8.6
28dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
29gb|AC110753.4| Homo sapiens BAC clone RP13-580O7 from 4, complet... 40 8.6
30dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
31dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
32dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
33emb|BX284620.5| Zebrafish DNA sequence from clone CH211-218E20 i... 40 8.6
34dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.6
35gb|AC145553.4| Mus musculus BAC clone RP23-106M1 from 7, complet... 40 8.6
36gb|AC162449.4| Mus musculus chromosome 1, clone RP23-424E19, com... 40 8.6
37gb|AC171001.2| Mus musculus BAC clone RP23-317I13 from chromosom... 40 8.6
38gb|DQ243066.1| Bombyx mori chromosome 17 microsatellite S1707-F ... 40 8.6 
>gb|AY104019.1| Zea mays PCO121780 mRNA sequence
          Length = 933

 Score =  174 bits (88), Expect = 2e-40
 Identities = 211/252 (83%)
 Strand = Plus / Minus

                                                                       
Query: 203 tacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtaggg 262
           ||||||||||||||||||||||||||    || ||||||||  | || ||||| || |||
Sbjct: 687 tacatcttctgcatgataacggagtttgccagcccagcttgcaccacggtctgcgttggg 628

                                                                       
Query: 263 tcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccggg 322
           |||| |||||||||||| ||||| || ||||||| |||||| || |  || | ||| || 
Sbjct: 627 tcagccagctgcttgggtgggaaacctgtctgcagctgatacggccttgcggttccaggc 568

                                                                       
Query: 323 cgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagcg 382
           || ||||| || ||||| ||||||||||| |||||||||||||| | ||| ||||| |||
Sbjct: 567 cgagatgcgtcgatgaaggacctgatgtctcccacggtgtggtgcatgttgaaccgggcg 508

                                                                       
Query: 383 accatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtcc 442
           ||||||||||||||||| |||| ||| |||||||| |||||||| ||||| ||||| |||
Sbjct: 507 accatgcgagtgccgtcagccagcctcagctgtatggatgtaaatggctgggagtcatcc 448

                       
Query: 443 acaactatgcca 454
           || |||||||||
Sbjct: 447 acgactatgcca 436



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 527 ccaagggttctaccaacaccctggaaggatgatcggggccttgcagcttcc 577
           ||||||||||| |||||||||||||| | |||| | |||||| ||| ||||
Sbjct: 363 ccaagggttcttccaacaccctggaaagctgattgaggccttacaggttcc 313
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>ref|XM_472780.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score =  155 bits (78), Expect = 2e-34
 Identities = 210/254 (82%)
 Strand = Plus / Minus

                                                                        
Query: 202  ctacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtagg 261
            |||||||||||| ||||| || ||||||   || |||||||| || || |||||||  ||
Sbjct: 1026 ctacatcttctgaatgatgacagagttcgccagaccagcttgctcgacggtctgtgctgg 967

                                                                        
Query: 262  gtcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccgg 321
             |||| ||||||||| |||||||| |||||||||| ||||||||| |  | ||| || ||
Sbjct: 966  atcagccagctgcttcggcgggaaaccagtctgcagctgatagggccttgtagccccagg 907

                                                                        
Query: 322  gcgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagc 381
             || || || || ||||||||||||||||| ||||| |||||||| | ||| || || ||
Sbjct: 906  ccgagaggcgtcgatgaaagacctgatgtcgcccaccgtgtggtgcatgttgaaacgggc 847

                                                                        
Query: 382  gaccatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtc 441
             |||||||||||||| || |||| |||||||||||| |||||||| ||  ||||||||||
Sbjct: 846  aaccatgcgagtgccatcggccagccttagctgtatggatgtaaatgggagcgagtcgtc 787

                          
Query: 442  cacaactatgccaa 455
            ||||||||| ||||
Sbjct: 786  cacaactattccaa 773



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 68/81 (83%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                       
Query: 491 ggagctggtgcaggactctcatctgctgaagatccccca---agggttctaccaacaccc 547
           |||||||||||  | ||||| ||||| |||||||| |||   |||||||| |||||||||
Sbjct: 746 ggagctggtgcctggctctcttctgcagaagatccaccaccaagggttcttccaacaccc 687

                                
Query: 548 tggaaggatgatcggggcctt 568
           ||||||| |||| | ||||||
Sbjct: 686 tggaagggtgatggaggcctt 666
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>gb|BT017837.1| Zea mays clone EL01N0509G01.c mRNA sequence
          Length = 1387

 Score =  155 bits (78), Expect = 2e-34
 Identities = 201/242 (83%)
 Strand = Plus / Minus

                                                                        
Query: 203  tacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtaggg 262
            |||||||||||||||||||| |||||    || |||||||| || || ||||| || |||
Sbjct: 1057 tacatcttctgcatgataacagagtttgcaagcccagcttgctccacggtctgcgttggg 998

                                                                        
Query: 263  tcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccggg 322
            |||| |||||||||||| ||||| || ||||||| |||||| || |  |||||||| || 
Sbjct: 997  tcagccagctgcttgggagggaaacccgtctgcagctgataaggccttgcagctccaggc 938

                                                                        
Query: 323  cgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagcg 382
            || | ||| || || || ||||||||||| |||||||||||||| | ||| ||||| |||
Sbjct: 937  cgagctgcgtctataaaggacctgatgtctcccacggtgtggtgcatgttgaaccgggcg 878

                                                                        
Query: 383  accatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtcc 442
            ||||||||||||||||| |||| ||| |||||||| || ||||| ||||| ||||| |||
Sbjct: 877  accatgcgagtgccgtcagccagcctcagctgtatggacgtaaatggctgggagtcatcc 818

              
Query: 443  ac 444
            ||
Sbjct: 817  ac 816



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 527 ccaagggttctaccaacaccctggaaggatgatcggggccttgcagcttcc 577
           ||||||||||| |||||||||||||| | |||||| |||||| ||| ||||
Sbjct: 733 ccaagggttcttccaacaccctggaaagctgatcgaggccttacaggttcc 683
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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score =  155 bits (78), Expect = 2e-34
 Identities = 210/254 (82%)
 Strand = Plus / Minus

                                                                         
Query: 202   ctacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtagg 261
             |||||||||||| ||||| || ||||||   || |||||||| || || |||||||  ||
Sbjct: 55315 ctacatcttctgaatgatgacagagttcgccagaccagcttgctcgacggtctgtgctgg 55256

                                                                         
Query: 262   gtcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccgg 321
              |||| ||||||||| |||||||| |||||||||| ||||||||| |  | ||| || ||
Sbjct: 55255 atcagccagctgcttcggcgggaaaccagtctgcagctgatagggccttgtagccccagg 55196

                                                                         
Query: 322   gcgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagc 381
              || || || || ||||||||||||||||| ||||| |||||||| | ||| || || ||
Sbjct: 55195 ccgagaggcgtcgatgaaagacctgatgtcgcccaccgtgtggtgcatgttgaaacgggc 55136

                                                                         
Query: 382   gaccatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtc 441
              |||||||||||||| || |||| |||||||||||| |||||||| ||  ||||||||||
Sbjct: 55135 aaccatgcgagtgccatcggccagccttagctgtatggatgtaaatgggagcgagtcgtc 55076

                           
Query: 442   cacaactatgccaa 455
             ||||||||| ||||
Sbjct: 55075 cacaactattccaa 55062



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 68/81 (83%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                         
Query: 491   ggagctggtgcaggactctcatctgctgaagatccccca---agggttctaccaacaccc 547
             |||||||||||  | ||||| ||||| |||||||| |||   |||||||| |||||||||
Sbjct: 55035 ggagctggtgcctggctctcttctgcagaagatccaccaccaagggttcttccaacaccc 54976

                                  
Query: 548   tggaaggatgatcggggcctt 568
             ||||||| |||| | ||||||
Sbjct: 54975 tggaagggtgatggaggcctt 54955
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  155 bits (78), Expect = 2e-34
 Identities = 210/254 (82%)
 Strand = Plus / Minus

                                                                            
Query: 202      ctacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtagg 261
                |||||||||||| ||||| || ||||||   || |||||||| || || |||||||  ||
Sbjct: 23165123 ctacatcttctgaatgatgacagagttcgccagaccagcttgctcgacggtctgtgctgg 23165064

                                                                            
Query: 262      gtcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccgg 321
                 |||| ||||||||| |||||||| |||||||||| ||||||||| |  | ||| || ||
Sbjct: 23165063 atcagccagctgcttcggcgggaaaccagtctgcagctgatagggccttgtagccccagg 23165004

                                                                            
Query: 322      gcgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagc 381
                 || || || || ||||||||||||||||| ||||| |||||||| | ||| || || ||
Sbjct: 23165003 ccgagaggcgtcgatgaaagacctgatgtcgcccaccgtgtggtgcatgttgaaacgggc 23164944

                                                                            
Query: 382      gaccatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtc 441
                 |||||||||||||| || |||| |||||||||||| |||||||| ||  ||||||||||
Sbjct: 23164943 aaccatgcgagtgccatcggccagccttagctgtatggatgtaaatgggagcgagtcgtc 23164884

                              
Query: 442      cacaactatgccaa 455
                ||||||||| ||||
Sbjct: 23164883 cacaactattccaa 23164870



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 68/81 (83%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                            
Query: 491      ggagctggtgcaggactctcatctgctgaagatccccca---agggttctaccaacaccc 547
                |||||||||||  | ||||| ||||| |||||||| |||   |||||||| |||||||||
Sbjct: 23164843 ggagctggtgcctggctctcttctgcagaagatccaccaccaagggttcttccaacaccc 23164784

                                     
Query: 548      tggaaggatgatcggggcctt 568
                ||||||| |||| | ||||||
Sbjct: 23164783 tggaagggtgatggaggcctt 23164763
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
            complete sequence
          Length = 121337

 Score =  155 bits (78), Expect = 2e-34
 Identities = 210/254 (82%)
 Strand = Plus / Minus

                                                                        
Query: 202  ctacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtagg 261
            |||||||||||| ||||| || ||||||   || |||||||| || || |||||||  ||
Sbjct: 3276 ctacatcttctgaatgatgacagagttcgccagaccagcttgctcgacggtctgtgctgg 3217

                                                                        
Query: 262  gtcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccgg 321
             |||| ||||||||| |||||||| |||||||||| ||||||||| |  | ||| || ||
Sbjct: 3216 atcagccagctgcttcggcgggaaaccagtctgcagctgatagggccttgtagccccagg 3157

                                                                        
Query: 322  gcgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagc 381
             || || || || ||||||||||||||||| ||||| |||||||| | ||| || || ||
Sbjct: 3156 ccgagaggcgtcgatgaaagacctgatgtcgcccaccgtgtggtgcatgttgaaacgggc 3097

                                                                        
Query: 382  gaccatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtc 441
             |||||||||||||| || |||| |||||||||||| |||||||| ||  ||||||||||
Sbjct: 3096 aaccatgcgagtgccatcggccagccttagctgtatggatgtaaatgggagcgagtcgtc 3037

                          
Query: 442  cacaactatgccaa 455
            ||||||||| ||||
Sbjct: 3036 cacaactattccaa 3023



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 68/81 (83%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                        
Query: 491  ggagctggtgcaggactctcatctgctgaagatccccca---agggttctaccaacaccc 547
            |||||||||||  | ||||| ||||| |||||||| |||   |||||||| |||||||||
Sbjct: 2996 ggagctggtgcctggctctcttctgcagaagatccaccaccaagggttcttccaacaccc 2937

                                 
Query: 548  tggaaggatgatcggggcctt 568
            ||||||| |||| | ||||||
Sbjct: 2936 tggaagggtgatggaggcctt 2916
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>dbj|AK069067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008O13, full
            insert sequence
          Length = 1352

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  ctacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtagg 261
            |||||||||||| ||||| || ||||||   || |||||||| || || |||||||  ||
Sbjct: 1036 ctacatcttctgaatgatgacagagttcgccagaccagcttgctcgacggtctgtgctgg 977

                                                                        
Query: 262  gtcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccgg 321
             |||| ||||||||| |||||||| |||||||||| ||||||||| |  | ||| || ||
Sbjct: 976  atcagccagctgcttcggcgggaaaccagtctgcagctgatagggccttgtagccccagg 917

                                                                        
Query: 322  gcgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagc 381
             || || || || ||||||||||| ||||| ||||| |||||||| | ||| |  || ||
Sbjct: 916  ccgagaggcgtcgatgaaagaccttatgtcgcccaccgtgtggtgcatgttgatacgggc 857

                                                                        
Query: 382  gaccatgcgagtgccgtccgccaaccttagctgtatagatgtaaacggctgcgagtcgtc 441
             |||||||||||||| || |||| |||||||||||| |||||||| ||  ||||||||||
Sbjct: 856  aaccatgcgagtgccatcggccagccttagctgtatggatgtaaatgggagcgagtcgtc 797

                          
Query: 442  cacaactatgccaa 455
            ||||||||| ||||
Sbjct: 796  cacaactattccaa 783



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 68/81 (83%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                       
Query: 491 ggagctggtgcaggactctcatctgctgaagatccccca---agggttctaccaacaccc 547
           |||||||||||  | ||||| ||||| |||||||| |||   |||||||| |||||||||
Sbjct: 756 ggagctggtgcctggctctcttctgcagaagatccaccaccaagggttcttccaacaccc 697

                                
Query: 548 tggaaggatgatcggggcctt 568
           ||||||| |||| | ||||||
Sbjct: 696 tggaagggtgatggaggcctt 676
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>gb|AY108276.1| Zea mays PCO140301 mRNA sequence
          Length = 495

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 148/181 (81%)
 Strand = Plus / Plus

                                                                       
Query: 203 tacatcttctgcatgataacggagttcttgagtccagcttggtcaacagtctgtgtaggg 262
           |||||||||||||||||||| |||||    || |||||||| || || ||||| || |||
Sbjct: 315 tacatcttctgcatgataacagagtttgcaagcccagcttgctccacggtctgcgttggg 374

                                                                       
Query: 263 tcagtcagctgcttgggcgggaagccagtctgcaactgatagggtcgcgcagctcccggg 322
           |||| |||||||||||| ||||| || ||||||| |||||| || |  |||||||| || 
Sbjct: 375 tcagccagctgcttgggagggaaacccgtctgcagctgataaggccttgcagctccaggc 434

                                                                       
Query: 323 cgggatgcatcaatgaaagacctgatgtcacccacggtgtggtgaaggttaaaccgagcg 382
           || | ||| || || || ||||||||||| |||||||||||||| | ||| ||||| |||
Sbjct: 435 cgagctgcgtctataaaggacctgatgtctcccacggtgtggtgcatgttgaaccgggcg 494

            
Query: 383 a 383
           |
Sbjct: 495 a 495
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>gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188458

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   gggagcactgtggggctcttg 483
             |||||||||||||||||||||
Sbjct: 81260 gggagcactgtggggctcttg 81280
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>gb|AC004845.2| Homo sapiens PAC clone RP4-635O5 from 7, complete sequence
          Length = 69847

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   ttgagtccagcttggtcaaca 250
             |||||||||||||||||||||
Sbjct: 57618 ttgagtccagcttggtcaaca 57598
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>ref|XM_645366.1| Entamoeba histolytica HM-1:IMSS heat shock protein 70 (218.t00008)
           partial mRNA
          Length = 1971

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 tgatggacatgataaaccatt 134
           |||||||||||||||||||||
Sbjct: 294 tgatggacatgataaaccatt 314
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>gb|AC087761.6| Homo sapiens chromosome 15, clone RP11-2E17, complete sequence
          Length = 153740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   gggaagccagtctgcaactga 301
             |||||||||||||||||||||
Sbjct: 91737 gggaagccagtctgcaactga 91717
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>gb|AC012337.8| Homo sapiens chromosome , clone RP11-119O22, complete sequence
          Length = 171695

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    gggaagccagtctgcaactga 301
              |||||||||||||||||||||
Sbjct: 135055 gggaagccagtctgcaactga 135035
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 17       tctcgtttgctagcaatatgaatat 41
                ||||||||||||| |||||||||||
Sbjct: 27060947 tctcgtttgctagtaatatgaatat 27060971



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 31      aatatgaatatgaatataga 50
               ||||||||||||||||||||
Sbjct: 9086529 aatatgaatatgaatataga 9086548
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>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 17    tctcgtttgctagcaatatgaatat 41
             ||||||||||||| |||||||||||
Sbjct: 32034 tctcgtttgctagtaatatgaatat 32058
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 24      tgctagcaatatgaatatgaa 44
               |||||||||||||||||||||
Sbjct: 1161133 tgctagcaatatgaatatgaa 1161153
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>gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 230270

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   gggagcactgtggggctcttg 483
             |||||||||||||||||||||
Sbjct: 43109 gggagcactgtggggctcttg 43129
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>gb|M84652.1|ENHHSP70A Entamoeba heat shock protein (Hsp70) mRNA, complete cds
          Length = 1997

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 tgatggacatgataaaccatt 134
           |||||||||||||||||||||
Sbjct: 303 tgatggacatgataaaccatt 323
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>gb|AC117559.7| Mus musculus chromosome 5, clone RP24-170C14, complete sequence
          Length = 129660

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    ctgatttaatgatgtctggg 162
              ||||||||||||||||||||
Sbjct: 124923 ctgatttaatgatgtctggg 124942
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>gb|AY525610.1| Homo sapiens progesterone receptor (PGR) gene, complete cds
          Length = 96124

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tctgtgtagggtcagtcagc 271
             ||||||||||||||||||||
Sbjct: 32922 tctgtgtagggtcagtcagc 32903
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>gb|AC103615.8| Mus musculus chromosome 5, clone RP24-174D16, complete sequence
          Length = 201693

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ctgatttaatgatgtctggg 162
              ||||||||||||||||||||
Sbjct: 172439 ctgatttaatgatgtctggg 172420
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>emb|AL356789.16| Human DNA sequence from clone RP5-1076L12 on chromosome 1p32.1-33
            Contains the 3' end of a variant of the gene for a novel
            protein, complete sequence
          Length = 99102

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  ggacatgataaaccattcaa 137
            ||||||||||||||||||||
Sbjct: 5269 ggacatgataaaccattcaa 5250
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>emb|AL139004.11| Human DNA sequence from clone RP11-398O19 on chromosome 13 Contains the
             3' end of the ATP8A2 gene for ATPase, aminophospholipid
             transporter-like, Class I, type 8A, member 2 (ML-1 protein
             (IB, ATP, ML-1, ATPIB, DKFZP434B1913)), a novel gene
             (LOC222477)(similar to hypothetical protein BC024118), a
             novel gene and a CpG island, complete sequence
          Length = 50685

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   gaaagacattctgtgcgactgatc 185
             |||||||||||||||| |||||||
Sbjct: 11904 gaaagacattctgtgctactgatc 11927
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>gb|AC008602.8| Homo sapiens chromosome 5 clone CTB-107J24, complete sequence
          Length = 106301

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     catgcaaagtgcagtatctg 115
              ||||||||||||||||||||
Sbjct: 100757 catgcaaagtgcagtatctg 100738
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>gb|AC093208.2| Homo sapiens chromosome 5 clone CTC-493D22, complete sequence
          Length = 112115

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    catgcaaagtgcagtatctg 115
             ||||||||||||||||||||
Sbjct: 32007 catgcaaagtgcagtatctg 32026
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 203      tacatcttctgcatgataac 222
                ||||||||||||||||||||
Sbjct: 24899134 tacatcttctgcatgataac 24899153
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>gb|AC010103.10|AC010103 Homo sapiens clone RP11-508H21, complete sequence
          Length = 194038

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    aaaccattcaacagcactga 146
              ||||||||||||||||||||
Sbjct: 150707 aaaccattcaacagcactga 150726
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>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0072I06
          Length = 162411

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   tacatcttctgcatgataac 222
             ||||||||||||||||||||
Sbjct: 82766 tacatcttctgcatgataac 82785
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>gb|AC110753.4| Homo sapiens BAC clone RP13-580O7 from 4, complete sequence
          Length = 33216

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ttaattttaatagccttctc 20
             ||||||||||||||||||||
Sbjct: 28117 ttaattttaatagccttctc 28136
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>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0003H03
          Length = 157905

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aatatgaatatgaatataga 50
             ||||||||||||||||||||
Sbjct: 96839 aatatgaatatgaatataga 96858
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>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0493C06
          Length = 158923

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    tacatcttctgcatgataac 222
              ||||||||||||||||||||
Sbjct: 133585 tacatcttctgcatgataac 133604
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>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0012K14
          Length = 155544

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aatatgaatatgaatataga 50
             ||||||||||||||||||||
Sbjct: 22023 aatatgaatatgaatataga 22042
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>emb|BX284620.5| Zebrafish DNA sequence from clone CH211-218E20 in linkage group 20,
             complete sequence
          Length = 201942

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    atatgaatatgaatatagac 51
             ||||||||||||||||||||
Sbjct: 80699 atatgaatatgaatatagac 80718
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>dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-788M5, complete
             sequence
          Length = 207183

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tctgtgtagggtcagtcagc 271
             ||||||||||||||||||||
Sbjct: 81599 tctgtgtagggtcagtcagc 81618
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>gb|AC145553.4| Mus musculus BAC clone RP23-106M1 from 7, complete sequence
          Length = 188631

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    gagtccagcttggtcaacag 251
              ||||||||||||||||||||
Sbjct: 126421 gagtccagcttggtcaacag 126440
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>gb|AC162449.4| Mus musculus chromosome 1, clone RP23-424E19, complete sequence
          Length = 184609

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    ttaatgatgtctgggaaaga 167
              ||||||||||||||||||||
Sbjct: 126167 ttaatgatgtctgggaaaga 126148
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>gb|AC171001.2| Mus musculus BAC clone RP23-317I13 from chromosome 7, complete sequence
          Length = 183576

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    gagtccagcttggtcaacag 251
              ||||||||||||||||||||
Sbjct: 113029 gagtccagcttggtcaacag 113010
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>gb|DQ243066.1| Bombyx mori chromosome 17 microsatellite S1707-F sequence
          Length = 514

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 ttaatgatgtctgggaaaga 167
           ||||||||||||||||||||
Sbjct: 413 ttaatgatgtctgggaaaga 432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,912,734
Number of Sequences: 3902068
Number of extensions: 4912734
Number of successful extensions: 99473
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99309
Number of HSP's gapped (non-prelim): 154
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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