ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17m08 |
|---|---|
| Clone Library Name | barley_pub |
>COPD_ORYSA (P49661) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 518 Score = 311 bits (796), Expect = 2e-84 Identities = 148/171 (86%), Positives = 161/171 (94%) Frame = -3 Query: 706 QIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASEM 527 QIVGAKDPNRPFPSGQNETPLVKWRIQ +NES+LPL+VNCWPSVSGNETYVNIEYEASEM Sbjct: 348 QIVGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEM 407 Query: 526 FDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPA 347 FDL+NVVISIPLPALREAP V+QIDGEW+YDSRNSVLEWSIIL+DQSNRSGS+EF VP A Sbjct: 408 FDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAA 467 Query: 346 DPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 DPSTFFPIS+GF ASNTFSDLKVT I PL+EG+PPK+SQR RLV NYQ+V Sbjct: 468 DPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 146 bits (368), Expect = 7e-35 Identities = 69/171 (40%), Positives = 112/171 (65%), Gaps = 1/171 (0%) Frame = -3 Query: 703 IVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-M 527 ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 LIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDN 401 Query: 526 FDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPA 347 +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+EF + P Sbjct: 402 LELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PG 460 Query: 346 DPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 QPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 146 bits (368), Expect = 7e-35 Identities = 69/171 (40%), Positives = 112/171 (65%), Gaps = 1/171 (0%) Frame = -3 Query: 703 IVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-M 527 ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 LIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDN 401 Query: 526 FDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPA 347 +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+EF + P Sbjct: 402 LELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PG 460 Query: 346 DPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 QPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 143 bits (361), Expect = 4e-34 Identities = 68/171 (39%), Positives = 111/171 (64%), Gaps = 1/171 (0%) Frame = -3 Query: 703 IVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-M 527 ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 LIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDN 401 Query: 526 FDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPA 347 +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+EF + Sbjct: 402 LELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AG 460 Query: 346 DPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 QPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 143 bits (361), Expect = 4e-34 Identities = 68/171 (39%), Positives = 111/171 (64%), Gaps = 1/171 (0%) Frame = -3 Query: 703 IVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-M 527 ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 LIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDN 401 Query: 526 FDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPA 347 +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+EF + Sbjct: 402 LELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AG 460 Query: 346 DPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 QPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 143 bits (360), Expect = 6e-34 Identities = 68/171 (39%), Positives = 111/171 (64%), Gaps = 1/171 (0%) Frame = -3 Query: 703 IVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-M 527 ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 LIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDN 401 Query: 526 FDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPA 347 +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID N+SGS+EF + Sbjct: 402 LELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AG 460 Query: 346 DPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 QPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 143 bits (360), Expect = 6e-34 Identities = 68/170 (40%), Positives = 110/170 (64%), Gaps = 1/170 (0%) Frame = -3 Query: 700 VGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MF 524 +G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SGN VNIEYE E Sbjct: 343 IGLKNPEKSFPIN-SDVGVLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESL 401 Query: 523 DLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPAD 344 +LN+VVI IPLP+ AP + +IDGE+++DSR ++LEW + +ID N+SGS+EF + Sbjct: 402 ELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI-AGQ 460 Query: 343 PSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 P+ FFP+ + F + + +++VT + + +P ++S + Y+I+ Sbjct: 461 PNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 119 bits (297), Expect = 1e-26 Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 1/167 (0%) Frame = -3 Query: 691 KDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEAS-EMFDLN 515 K +P+P ++ ++KW++ E LP+S NCWP S + VNIEY E LN Sbjct: 352 KPNGKPYPVN-SDVGILKWKMALSEEEQLPISFNCWPQESSDGVQVNIEYTLQREDITLN 410 Query: 514 NVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPST 335 NV I +PLP AP+V + DGE++Y +V+ WS+ +ID SN SG++EF VP Sbjct: 411 NVRIIVPLPTAT-APSVGECDGEYEYHKTKNVIVWSLAVIDSSNSSGTLEFSVPNGHCDH 469 Query: 334 FFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 194 FFP+S+GF + N F + V + +G+P YS + N++IV Sbjct: 470 FFPVSVGFTSENLFVPITVQKV-VKNDGSPVTYSVETTFNSENFEIV 515
>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| Length = 545 Score = 38.1 bits (87), Expect = 0.027 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = -3 Query: 706 QIVGAKDPNRPFPSGQNETPLVKWR--IQGMNESNLPLSVNCW--PSVSGNETYVNIEYE 539 +++ +D ++ FP+ +++WR ++S +PL++ W PS S V IEYE Sbjct: 361 KLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTWVSPSESQQGFDVIIEYE 420 Query: 538 ASEMFDLNNVVISIPL 491 + +L +V+ +IP+ Sbjct: 421 SVLETELADVIFTIPV 436
>BCSA2_ACEXY (O82859) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 756 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = -3 Query: 616 ESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQI----DG 449 E+++P++V P+ TY N + ++ + V + IPLP + P K+I DG Sbjct: 584 EAHIPVTVYDAPAEGQPHTYYNATHGMTQDVSMGGVAVHIPLPDVTTGPVKKRIHAVLDG 643 Query: 448 E 446 E Sbjct: 644 E 644
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 1.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 505 ISIPLPALREAPTVKQIDGEWKYDSRNSV 419 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 1.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 505 ISIPLPALREAPTVKQIDGEWKYDSRNSV 419 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.3 bits (72), Expect = 1.5 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 580 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 419 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 418 LEWSI 404 + WSI Sbjct: 340 IVWSI 344
>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47) (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoor Length = 422 Score = 32.0 bits (71), Expect = 1.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -3 Query: 517 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIV 356 NNV I IP+P+ ++P K G KY S W+I N G E+++ Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI-----KNFPGGKEYLL 355
>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 580 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 419 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 418 LEWSI 404 + WS+ Sbjct: 340 IVWSV 344
>C93A1_SOYBN (Q42798) Cytochrome P450 93A1 (EC 1.14.-.-)| Length = 509 Score = 31.6 bits (70), Expect = 2.5 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = -3 Query: 676 PFPSGQNETP--LVKWRIQGMNESNLPLSVNC--WPSVSGNETYVNIEYEASEMFDLNNV 509 PF SG+ P + W++ +N L + + C W V GN V++E ++ N Sbjct: 439 PFGSGRRTCPGASLAWQVVPVN---LAIIIQCFQWKLVGGNGK-VDMEEKSGITLPRANP 494 Query: 508 VISIPLPALREAPTV 464 +I +P+P + PT+ Sbjct: 495 IICVPVPRINPFPTI 509
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 517 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 404 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSI 345
>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 517 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 404 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSI 345
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 30.0 bits (66), Expect = 7.2 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 514 NVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 404 NV I IP+P + PT K G KY S + W I Sbjct: 348 NVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKI 384
>MFD_ECOLI (P30958) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1148 Score = 30.0 bits (66), Expect = 7.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 53 IHAFICQWCDTLHMEQDKSHIFKQVS 130 I F QW DT +++D HI++QVS Sbjct: 224 IELFRSQWRDTFEVKRDPEHIYQQVS 249
>SRP72_SCHPO (O59787) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 561 Score = 29.6 bits (65), Expect = 9.4 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 Query: 540 RPQRCLT*TMLSYQFLCLHFGRLQPLNRLMESGSMTLETLYWNGPLSLLIS 388 + Q C +L + L H P++ + + S+ + L W GP+S L+S Sbjct: 401 KQQSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVS 451
>MLTK_MOUSE (Q9ESL4) Mitogen-activated protein kinase kinase kinase MLT (EC| 2.7.11.25) (MLK-like mitogen-activated protein triple kinase) (Leucine zipper-and sterile alpha motif kinase ZAK) (Sterile alpha motif- and leucine zipper-containing kinase AZK) ( Length = 802 Score = 29.6 bits (65), Expect = 9.4 Identities = 19/43 (44%), Positives = 21/43 (48%) Frame = +2 Query: 2 IKTAFSQEEILQTGYRRIHAFICQWCDTLHMEQDKSHIFKQVS 130 I+T FS E G R + CQW DTL M Q SH Q S Sbjct: 550 IQTLFSSSEG-NPGSRSDSSADCQWLDTLRMRQIASHTSLQRS 591 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,741,901 Number of Sequences: 219361 Number of extensions: 2345723 Number of successful extensions: 5442 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5431 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
