ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DMD_CAEEL (Q9TW65) Dystrophin-1 33 0.98
2FOG2_MOUSE (Q8CCH7) Zinc finger protein ZFPM2 (Zinc finger prote... 31 2.8
3FOG2_HUMAN (Q8WW38) Zinc finger protein ZFPM2 (Zinc finger prote... 31 3.7
4MYCD_RAT (Q8R5I7) Myocardin 30 6.3
5TECTB_CHICK (P54097) Beta-tectorin precursor 30 8.3

>DMD_CAEEL (Q9TW65) Dystrophin-1|
          Length = 3674

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 240  FPVFGRTKRAMTCYYCDLLQNSFTVFNCWKHH 145
            FP+ G   R +TC+ CDL QN F      K H
Sbjct: 3312 FPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSH 3343



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>FOG2_MOUSE (Q8CCH7) Zinc finger protein ZFPM2 (Zinc finger protein multitype|
           2) (Friend of GATA protein 2) (Friend of GATA-2) (FOG-2)
           (mFOG-2)
          Length = 1151

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
 Frame = +3

Query: 237 GMENDFSPVDH------HSAKTNIPGPQRDSSLSSS---ELHLNKHSGPSQKSFTP 377
           G + + +PV        H   +  P PQ   S S++   E+HLN HSG   + F P
Sbjct: 275 GRQREAAPVSEENEDNSHQVSSLCPFPQCTKSFSNARALEMHLNSHSGVKMEEFLP 330



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>FOG2_HUMAN (Q8WW38) Zinc finger protein ZFPM2 (Zinc finger protein multitype|
           2) (Friend of GATA protein 2) (FOG-2) (hFOG-2)
          Length = 1151

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
 Frame = +3

Query: 237 GMENDFSPVDH------HSAKTNIPGPQRDSSLSSS---ELHLNKHSGPSQKSFTP 377
           G + + +PV        H   +  P PQ   S S++   E+HLN HSG   + F P
Sbjct: 275 GRQREAAPVSEENEDSAHQISSLCPFPQCTKSFSNARALEMHLNSHSGVKMEEFLP 330



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>MYCD_RAT (Q8R5I7) Myocardin|
          Length = 938

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 16  QNKRFSFPSNHHGNIQNHYSRLLRNNTSLSTIQN*ALNFPFTSVVLPAIKNS 171
           Q +RFS+P  H  +++    ++ RN  S ST        P  +  L  +KNS
Sbjct: 321 QQQRFSYPGMHQAHLKEPNEQMTRNPNSSST--------PLNNTPLSPVKNS 364



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>TECTB_CHICK (P54097) Beta-tectorin precursor|
          Length = 329

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
 Frame = +3

Query: 210 WPFLSSQRRGMENDFSPVDHHSAKTNIPGPQRDS-------SLSSSELHLNKHSGPSQKS 368
           WP ++   +G  +DFS V H + KTN    Q ++        LS   LH   H   S+K 
Sbjct: 218 WPLIT---KGCASDFSIVVHENGKTNRATFQFNAFRFQNIPKLSKVWLHCETHVCDSEKF 274

Query: 369 FTPTDC 386
             P  C
Sbjct: 275 SCPVTC 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,537,247
Number of Sequences: 219361
Number of extensions: 2026258
Number of successful extensions: 5193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5192
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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