| Clone Name | rbags18b04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190006.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1095 Score = 103 bits (52), Expect = 7e-19 Identities = 242/304 (79%), Gaps = 1/304 (0%) Strand = Plus / Minus Query: 357 tggcatgattgtcgtcatcccgatctcttgctcgtgtatccggtggatctcagcttccac 416 |||||||||||| ||||||| |||||||||||| | || |||| ||||| || ||||| Sbjct: 1041 tggcatgattgtggtcatcctcatctcttgctcgcgaattcggtttatctccgcctccac 982 Query: 417 caggctcatcgaagggcggttctcacttgccgggttcacgcaccgcgatgctaggcgcag 476 || | ||||||| ||||| | ||| || | |||||||||||||| ||||| | ||||| Sbjct: 981 caagttcatcgatgggcgatgctcgctcgtcgggttcacgcaccacgatgtcaaccgcag 922 Query: 477 cagttccttcaggcccagtgaggtaaagacactggtcattctcctatctgctattgcaga 536 | ||| ||| ||| ||||||| || |||||| |||||| ||||||| |||||||| Sbjct: 921 aaattctctcatgccttctgaggtataggcactggccattctgttatctgcaattgcaga 862 Query: 537 gatatcacttgattcttgaaagtttcgaacccattcaacaatgccttgatcagacgcagc 596 |||||||||||||| ||| ||||| | |||||| || ||| |||||||||| ||| Sbjct: 861 gatatcacttgattgttggaagttctgcacccatcgaatgatgttttgatcagacagagc 802 Query: 597 ttgtccttccactgatcagctccacaatgaacacgccaaaactgtatacatcactctgta 656 || | ||||||| || |||||||| ||| || |||||||||||||||||||| || | Sbjct: 801 -cctcttgccactgagcaactccacaaggaaaacaccaaaactgtatacatcactttgaa 743 Query: 657 tgga 660 |||| Sbjct: 742 tgga 739
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 5e-17 Identities = 211/265 (79%) Strand = Plus / Plus Query: 296 ttcttcttcatcttgatgatgtgaagagctggctgccgagggccacagttgtgtttccgt 355 |||||||||| | ||||| |||||||||||| || || || | |||||||| | | | Sbjct: 40779329 ttcttcttcaacctgatgttgtgaagagctgactacctagagtcacagttggtgtgcttt 40779388 Query: 356 gtggcatgattgtcgtcatcccgatctcttgctcgtgtatccggtggatctcagcttcca 415 |||||||||||| ||||||| |||||||||||| | || |||| ||||| || |||| Sbjct: 40779389 ctggcatgattgtggtcatcctcatctcttgctcgcgaattcggtttatctccgcctcca 40779448 Query: 416 ccaggctcatcgaagggcggttctcacttgccgggttcacgcaccgcgatgctaggcgca 475 ||| | ||||||| ||||| | ||| || | |||||||||||||| ||||| | |||| Sbjct: 40779449 ccaagttcatcgatgggcgatgctcgctcgtcgggttcacgcaccacgatgtcaaccgca 40779508 Query: 476 gcagttccttcaggcccagtgaggtaaagacactggtcattctcctatctgctattgcag 535 | | ||| ||| ||| ||||||| || |||||| |||||| ||||||| ||||||| Sbjct: 40779509 gaaattctctcatgccttctgaggtataggcactggccattctgttatctgcaattgcag 40779568 Query: 536 agatatcacttgattcttgaaagtt 560 ||||||||||||||| ||| ||||| Sbjct: 40779569 agatatcacttgattgttggaagtt 40779593 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 605 ccactgatcagctccacaatgaacacgccaaaactgtatacatcactctgtatgga 660 ||||||| || |||||||| ||| || |||||||||||||||||||| || ||||| Sbjct: 40779771 ccactgagcaactccacaaggaaaacaccaaaactgtatacatcactttgaatgga 40779826
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 97.6 bits (49), Expect = 5e-17 Identities = 211/265 (79%) Strand = Plus / Plus Query: 296 ttcttcttcatcttgatgatgtgaagagctggctgccgagggccacagttgtgtttccgt 355 |||||||||| | ||||| |||||||||||| || || || | |||||||| | | | Sbjct: 81975 ttcttcttcaacctgatgttgtgaagagctgactacctagagtcacagttggtgtgcttt 82034 Query: 356 gtggcatgattgtcgtcatcccgatctcttgctcgtgtatccggtggatctcagcttcca 415 |||||||||||| ||||||| |||||||||||| | || |||| ||||| || |||| Sbjct: 82035 ctggcatgattgtggtcatcctcatctcttgctcgcgaattcggtttatctccgcctcca 82094 Query: 416 ccaggctcatcgaagggcggttctcacttgccgggttcacgcaccgcgatgctaggcgca 475 ||| | ||||||| ||||| | ||| || | |||||||||||||| ||||| | |||| Sbjct: 82095 ccaagttcatcgatgggcgatgctcgctcgtcgggttcacgcaccacgatgtcaaccgca 82154 Query: 476 gcagttccttcaggcccagtgaggtaaagacactggtcattctcctatctgctattgcag 535 | | ||| ||| ||| ||||||| || |||||| |||||| ||||||| ||||||| Sbjct: 82155 gaaattctctcatgccttctgaggtataggcactggccattctgttatctgcaattgcag 82214 Query: 536 agatatcacttgattcttgaaagtt 560 ||||||||||||||| ||| ||||| Sbjct: 82215 agatatcacttgattgttggaagtt 82239 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 605 ccactgatcagctccacaatgaacacgccaaaactgtatacatcactctgtatgga 660 ||||||| || |||||||| ||| || |||||||||||||||||||| || ||||| Sbjct: 82417 ccactgagcaactccacaaggaaaacaccaaaactgtatacatcactttgaatgga 82472
>gb|AC163664.3| Mus musculus BAC clone RP23-310P18 from chromosome 14, complete sequence Length = 221930 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 83 gaaaccctatgtcgaataacgaagaaa 109 |||||||||||||||||||| |||||| Sbjct: 9930 gaaaccctatgtcgaataacaaagaaa 9904
>gb|AC125117.4| Mus musculus BAC clone RP24-261P10 from chromosome 14, complete sequence Length = 165313 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 83 gaaaccctatgtcgaataacgaagaaa 109 |||||||||||||||||||| |||||| Sbjct: 115036 gaaaccctatgtcgaataacaaagaaa 115010
>gb|AC093602.5| Homo sapiens BAC clone RP11-371F15 from 4, complete sequence Length = 120834 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 50 aaaaaagaattgccattcttttt 72 ||||||||||||||||||||||| Sbjct: 78536 aaaaaagaattgccattcttttt 78514
>gb|AC147545.3| Mus musculus BAC clone RP23-355L20 from 14, complete sequence Length = 211446 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 83 gaaaccctatgtcgaataacgaagaaa 109 |||||||||||||||||||| |||||| Sbjct: 129460 gaaaccctatgtcgaataacaaagaaa 129486
>ref|NM_194877.1| Oryza sativa (japonica cultivar-group) putative wall-associated protein kinase (OSJNBa0028C16.9), mRNA Length = 2088 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 1817 ccaaaactgtatacatcactct 1796
>ref|NM_194869.1| Oryza sativa (japonica cultivar-group) putative wall-associated protein kinase (OSJNBa0031A07.17), mRNA Length = 2082 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 1811 ccaaaactgtatacatcactct 1790
>ref|XM_462692.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1986 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 1616 ccaaaactgtatacatcactct 1595
>ref|XM_450977.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2322 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 1913 ccaaaactgtatacatcactct 1892
>ref|XM_473747.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1986 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 1616 ccaaaactgtatacatcactct 1595
>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence Length = 221001 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 586 tcagacgcagcttgtccttccactga 611 ||||||||||||| |||||||||||| Sbjct: 105644 tcagacgcagcttctccttccactga 105669
>gb|AC123572.15| Medicago truncatula clone mth2-2b2, complete sequence Length = 119925 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 57850 ccaaaactgtatacatcactct 57829
>gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, complete sequence Length = 134553 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 132707 ccaaaactgtatacatcactct 132686
>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence Length = 166757 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 70931 ccaaaactgtatacatcactct 70952 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 13917 ccaaaactgtatacatcactct 13896
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 30255035 ccaaaactgtatacatcactct 30255056 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ctttccattcttcttcatct 308 |||||||||||||||||||| Sbjct: 3390341 ctttccattcttcttcatct 3390322
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 3101299 ccaaaactgtatacatcactct 3101320 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 3044285 ccaaaactgtatacatcactct 3044264
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 17907211 ccaaaactgtatacatcactct 17907232
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_B06 Length = 106678 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 58030 ccaaaactgtatacatcactct 58051
>dbj|AK111662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153M19, full insert sequence Length = 3701 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 2976 ccaaaactgtatacatcactct 2955
>dbj|AK111508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F05, full insert sequence Length = 2639 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 1921 ccaaaactgtatacatcactct 1900
>dbj|AK060211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B07, full insert sequence Length = 1502 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 924 ccaaaactgtatacatcactct 903
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 3101220 ccaaaactgtatacatcactct 3101241 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 3044206 ccaaaactgtatacatcactct 3044185
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 151329 ccaaaactgtatacatcactct 151350
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 632 ccaaaactgtatacatcactct 653 |||||||||||||||||||||| Sbjct: 4931 ccaaaactgtatacatcactct 4952
>ref|NM_114507.2| Arabidopsis thaliana kinase AT3G46400 mRNA, complete cds Length = 2652 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactc 652 ||||||||||||||||||||| Sbjct: 2294 ccaaaactgtatacatcactc 2274
>ref|NM_001031340.1| Gallus gallus ceramide kinase (CERK), mRNA Length = 4405 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 ataactttccattcttcttcatctt 309 ||||| ||||||||||||||||||| Sbjct: 1276 ataaccttccattcttcttcatctt 1252
>emb|Z86109.1|SCZ86109 S.carlsbergensis 12 kb region of chromosome III Length = 11922 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 cggctcactatgagaagaaac 207 ||||||||||||||||||||| Sbjct: 10651 cggctcactatgagaagaaac 10671
>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15 Length = 100328 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcactc 652 ||||||||||||||||||||| Sbjct: 63156 ccaaaactgtatacatcactc 63136
>emb|AJ851677.1| Gallus gallus mRNA for hypothetical protein, clone 16p10 Length = 4405 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 ataactttccattcttcttcatctt 309 ||||| ||||||||||||||||||| Sbjct: 1276 ataaccttccattcttcttcatctt 1252
>emb|CR394525.8| Zebrafish DNA sequence from clone DKEY-24N17 in linkage group 10, complete sequence Length = 215862 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 602 cttccactgatcagctccacaatga 626 ||||||||||||||||||| ||||| Sbjct: 144860 cttccactgatcagctccaaaatga 144836
>emb|CR386590.1| Gallus gallus finished cDNA, clone ChEST291d19 Length = 1450 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 ataactttccattcttcttcatctt 309 ||||| ||||||||||||||||||| Sbjct: 940 ataaccttccattcttcttcatctt 916
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE Length = 136557 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 629 acgccaaaactgtatacatcactct 653 ||||| ||||||||||||||||||| Sbjct: 37827 acgccgaaactgtatacatcactct 37803
>ref|NM_105039.3| Arabidopsis thaliana unknown protein AT1G63610 transcript variant AT1G63610.1 mRNA, complete cds Length = 1246 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttgcacagctgatgatgagc 186 |||||||||||||||||||| Sbjct: 503 ttgcacagctgatgatgagc 522
>ref|NM_202349.1| Arabidopsis thaliana unknown protein AT1G63610 transcript variant AT1G63610.2 mRNA, complete cds Length = 1298 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttgcacagctgatgatgagc 186 |||||||||||||||||||| Sbjct: 555 ttgcacagctgatgatgagc 574
>ref|NM_128492.1| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT2G29380 mRNA, complete cds Length = 1089 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 453 tttccattcttcttcatctt 434
>ref|XM_639011.1| Dictyostelium discoideum hypothetical protein (DDB0217532), partial mRNA Length = 3498 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 gatatcacttgattcttgaa 556 |||||||||||||||||||| Sbjct: 1440 gatatcacttgattcttgaa 1421
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 580 ccttgatcagacgcagcttgtcct 603 |||||||||| ||||||||||||| Sbjct: 2757159 ccttgatcaggcgcagcttgtcct 2757136
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 1654072 tttccattcttcttcatctt 1654053
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 gagaagaaactaatggggcaaaat 221 ||||||||||||||||| |||||| Sbjct: 358895 gagaagaaactaatgggtcaaaat 358918
>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence Length = 105161 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcact 651 |||||||||||||||||||| Sbjct: 23397 ccaaaactgtatacatcact 23378
>gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete sequence Length = 106528 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 ccaaaactgtatacatcact 651 |||||||||||||||||||| Sbjct: 69765 ccaaaactgtatacatcact 69746
>emb|AL391684.6| Human DNA sequence from clone RP11-441O15 on chromosome 10 Contains the CNNM1 gene for cyclin M1, the GOT1 gene for glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1), a novel gene and two CpG islands, complete sequence Length = 172792 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ggtggatctcagcttccacc 417 |||||||||||||||||||| Sbjct: 164488 ggtggatctcagcttccacc 164507
>emb|AL136130.7| Human DNA sequence from clone RP1-39M18 on chromosome 6q26-27 Contains part of the PDE10A gene for phosphodiesterase 10A, complete sequence Length = 69674 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 tatgagaagaaactaatggggcaaaatt 222 |||||||||||| |||||| |||||||| Sbjct: 34998 tatgagaagaaattaatggagcaaaatt 35025
>emb|AL049697.9|HSJ382I10 Human DNA sequence from clone RP3-382I10 on chromosome 6q14.3-15 Contains a novel gene, a TAF13 RNA polymerase II, TATA box binding protei (TBP)-associated factor (TAF13) (TAF2K) pseudogene, an S-adenosylmethionine decarboxylase 1 (AMD1) pseudogene, a suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) (ST13) (HIP) pseudogene, the SLC35A1 gene for solute carrier family 35 (CMP-sialic acid transporter) member 1, the 3' end of the gene for a novel protein similar to arginyl-tRNA synthetase (arginine-tRNA ligase, EC 6.1.1.19) and two CpG islands, complete sequence Length = 141207 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 ggtggatctcagcttccacc 417 |||||||||||||||||||| Sbjct: 72086 ggtggatctcagcttccacc 72067
>gb|AC124303.5| Homo sapiens chromosome 15, clone RP11-145P16, complete sequence Length = 160535 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 gagaagaaactaatggggcaaaat 221 ||||||||||||||||| |||||| Sbjct: 119364 gagaagaaactaatgggtcaaaat 119341
>gb|AC165178.2| Zea mays clone ZMMBBb-272P17, complete sequence Length = 131485 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 ctttccattcttcttcatcttgat 312 |||||||||||||||| ||||||| Sbjct: 92565 ctttccattcttcttcttcttgat 92542
>gb|DQ056553.1| Arabidopsis thaliana putative protein phosphatase 2C (At2g29380) mRNA, complete cds Length = 1089 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 453 tttccattcttcttcatctt 434
>dbj|AB154818.1| Geobacillus sp. HTA-462 gsj gene for alpha-glucosidase, complete cds Length = 1668 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tcgtcatcccgatctcttgc 387 |||||||||||||||||||| Sbjct: 1111 tcgtcatcccgatctcttgc 1092
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence Length = 131743 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 50343 tttccattcttcttcatctt 50362
>gb|AF250841.1|AF250841 Homo sapiens PAC clones A17157 and P0950 imprinted HBII-85 and HBII-52 small nucleolar RNA genes, complete sequence Length = 228017 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 gagaagaaactaatggggcaaaat 221 ||||||||||||||||| |||||| Sbjct: 52132 gagaagaaactaatgggtcaaaat 52155
>gb|BT006492.1| Arabidopsis thaliana At1g63610 gene, complete cds Length = 1023 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttgcacagctgatgatgagc 186 |||||||||||||||||||| Sbjct: 428 ttgcacagctgatgatgagc 447
>gb|BT023483.1| Arabidopsis thaliana At2g29380 gene, complete cds Length = 1089 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 453 tttccattcttcttcatctt 434
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgagaagaaactaatggggc 216 |||||||||||||||||||| Sbjct: 19817335 tgagaagaaactaatggggc 19817354 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 628 cacgccaaaactgtatacatcact 651 ||||||||||||||| |||||||| Sbjct: 4168992 cacgccaaaactgtaaacatcact 4169015
>emb|BX820801.1|CNS0A8L8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH70ZB07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1596 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 731 tttccattcttcttcatctt 712
>emb|BX820554.1|CNS0A8M2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH47ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1447 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 691 tttccattcttcttcatctt 672
>gb|BT022047.1| Arabidopsis thaliana At2g29380 gene, complete cds Length = 1285 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 606 tttccattcttcttcatctt 587
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttgcacagctgatgatgagc 186 |||||||||||||||||||| Sbjct: 83873 ttgcacagctgatgatgagc 83892
>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence Length = 405682 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 gatatcacttgattcttgaa 556 |||||||||||||||||||| Sbjct: 307435 gatatcacttgattcttgaa 307454
>gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis thaliana BAC F2K11 from chromosome I, complete sequence Length = 100867 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttgcacagctgatgatgagc 186 |||||||||||||||||||| Sbjct: 11926 ttgcacagctgatgatgagc 11945
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tcgtcatcccgatctcttgc 387 |||||||||||||||||||| Sbjct: 639300 tcgtcatcccgatctcttgc 639281
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgagaagaaactaatggggc 216 |||||||||||||||||||| Sbjct: 125886 tgagaagaaactaatggggc 125905
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 628 cacgccaaaactgtatacatcact 651 ||||||||||||||| |||||||| Sbjct: 79006 cacgccaaaactgtaaacatcact 79029
>dbj|AK073251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022H17, full insert sequence Length = 783 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgagaagaaactaatggggc 216 |||||||||||||||||||| Sbjct: 661 tgagaagaaactaatggggc 642
>dbj|AK070816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066M01, full insert sequence Length = 3643 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 628 cacgccaaaactgtatacatcact 651 ||||||||||||||| |||||||| Sbjct: 397 cacgccaaaactgtaaacatcact 374
>dbj|AK063386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G09, full insert sequence Length = 2760 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 628 cacgccaaaactgtatacatcact 651 ||||||||||||||| |||||||| Sbjct: 2143 cacgccaaaactgtaaacatcact 2120
>gb|AY111538.1| Zea mays CL39286_1 mRNA sequence Length = 586 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gtgaagagctggctgccgag 335 |||||||||||||||||||| Sbjct: 315 gtgaagagctggctgccgag 334
>gb|AY104829.1| Zea mays PCO101760 mRNA sequence Length = 873 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 taactttccattcttcttca 305 |||||||||||||||||||| Sbjct: 288 taactttccattcttcttca 269
>gb|AC005856.1|AC005856 Homo sapiens chromosome 17, clone hRPK.136_H_19, complete sequence Length = 126910 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ctggtcattctcctatctgc 527 |||||||||||||||||||| Sbjct: 4026 ctggtcattctcctatctgc 4007
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttccattcttcttcatctt 309 |||||||||||||||||||| Sbjct: 1759571 tttccattcttcttcatctt 1759552
>emb|AL627408.13| Mouse DNA sequence from clone RP23-279G21 on chromosome X, complete sequence Length = 98324 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 catcttgatgatgtgaagagctgg 327 ||||||||| |||||||||||||| Sbjct: 55337 catcttgattatgtgaagagctgg 55360
>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete sequence Length = 165747 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 aaaagaattgccattcttttttgtacaa 79 ||||||||| ||||||||||||||||| Sbjct: 154426 aaaagaatttacattcttttttgtacaa 154399
>dbj|D84648.1|BACEA14G Bacillus stearothermophilus DNA for exo-alpha-1,4-glucosidase, complete cds Length = 2074 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tcgtcatcccgatctcttgc 387 |||||||||||||||||||| Sbjct: 1309 tcgtcatcccgatctcttgc 1290
>dbj|AB041030.1| Arthrobacter sp. FHP1 4-chlorobenzoate dehalogenase genes(tnpR,fcbA1,fcbB1,fcbC1,fcbA2,fcbB2,fcbC2,fcbK), complete cds Length = 16405 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tgatgatgagccggctcact 195 |||||||||||||||||||| Sbjct: 7618 tgatgatgagccggctcact 7637 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,364,389 Number of Sequences: 3902068 Number of extensions: 6364389 Number of successful extensions: 124436 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123836 Number of HSP's gapped (non-prelim): 600 length of query: 671 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 648 effective length of database: 17,143,297,704 effective search space: 11108856912192 effective search space used: 11108856912192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)