ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSA_VIBCH (Q9KU97) Glutamate-1-semialdehyde 2,1-aminomutase (EC ... 31 3.0

>GSA_VIBCH (Q9KU97) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)|
           (GSA) (Glutamate-1-semialdehyde aminotransferase)
           (GSA-AT)
          Length = 432

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 298 HSKELVVHFLNGLFIIYLLQFFWFLCVDSCNRATVEAYGRLFH-MTRVGAQFAP 140
           H   L+VH + G+F  +  +     C +   R  VE + R FH M + G   AP
Sbjct: 342 HGIPLLVHQVGGMFGFFFTEQETVTCYEDVARCDVERFKRFFHLMLQHGVYLAP 395


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,715,375
Number of Sequences: 219361
Number of extensions: 1420033
Number of successful extensions: 2261
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2261
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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