ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17m03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in... 48 0.033
2gb|AC108709.3| Homo sapiens 3 BAC RP11-81P15 (Roswell Park Cance... 46 0.13
3emb|BX005254.9| Zebrafish DNA sequence from clone DKEY-81P22 in ... 46 0.13
4gb|AC154601.3| Mus musculus BAC clone RP23-342J18 from chromosom... 44 0.51
5gb|AC157992.7| Mus musculus chromosome 8, clone RP23-302J17, com... 42 2.0
6gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence 42 2.0
7gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like seq... 42 2.0
8gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like s... 42 2.0
9gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like seq... 42 2.0
10ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfami... 42 2.0
11gb|AC129311.6| Mus musculus BAC clone RP24-404P10 from chromosom... 42 2.0
12gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8,... 42 2.0
13emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 i... 42 2.0
14emb|BX005124.7| Zebrafish DNA sequence from clone CH211-284A16 i... 42 2.0
15emb|CR387926.5| Zebrafish DNA sequence from clone CH211-247J4 in... 42 2.0
16gb|AC092597.1| Homo sapiens BAC clone RP11-100N21 from 4, comple... 42 2.0
17gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence 42 2.0
18gb|AC011541.7| Homo sapiens chromosome 19 clone LLNLR-258F7, com... 42 2.0
19gb|DQ208194.1| Mayetiola destructor Mde8i18_1 gene, partial cds;... 42 2.0
20emb|CR376750.10| Zebrafish DNA sequence from clone DKEY-92I15 in... 42 2.0
21gb|AC132599.3| Mus musculus BAC clone RP24-131O15 from 3, comple... 42 2.0
22gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 8.0
23gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 8.0
24gb|AY514485.1| Avian infectious bronchitis virus strain Cal99, c... 40 8.0
25gb|AC162613.2| Mus musculus chromosome 19, clone RP24-270E10, co... 40 8.0
26gb|AC079799.7| Homo sapiens BAC clone RP11-665O4 from 7, complet... 40 8.0
27gb|AC145924.3| Pan troglodytes BAC clone RP43-19G18 from 7, comp... 40 8.0
28gb|AC141639.3| Mus musculus BAC clone RP23-354J7 from chromosome... 40 8.0
29emb|BX649517.15| Zebrafish DNA sequence from clone DKEY-174D5 in... 40 8.0
30gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome... 40 8.0
31gb|AC004027.1| Homo sapiens PAC clone RP4-791I21 from 7, complet... 40 8.0
32gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, co... 40 8.0
33gb|BC032296.1| Homo sapiens transmembrane protein 123, mRNA (cDN... 40 8.0
34emb|CR848041.4| Zebrafish DNA sequence from clone DKEY-4K21 in l... 40 8.0
35emb|CR407548.6| Zebrafish DNA sequence from clone DKEY-166N22 in... 40 8.0
36emb|CR788323.5| Zebrafish DNA sequence from clone DKEYP-71G11 in... 40 8.0
37gb|AC068506.10| Homo sapiens chromosome 18, clone RP11-96A15, co... 40 8.0
38emb|BX511228.8| Zebrafish DNA sequence from clone DKEY-174F1 in ... 40 8.0
39dbj|AK075420.1| Homo sapiens cDNA PSEC0111 fis, clone NT2RP20060... 40 8.0
40emb|CR598031.1| full-length cDNA clone CS0DD009YF13 of Neuroblas... 40 8.0
41gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, comp... 40 8.0
42emb|BX470132.6| Zebrafish DNA sequence from clone DKEY-202L16 in... 40 8.0
43emb|AL954357.16| Zebrafish DNA sequence from clone DKEY-46A10 in... 40 8.0
44gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta ... 40 8.0
45gb|AC022601.6| Homo sapiens chromosome 18, clone RP11-138H11, co... 40 8.0
46gb|AY008283.1| Homo sapiens porimin mRNA, complete cds 40 8.0
47ref|NM_052932.1| Homo sapiens transmembrane protein 123 (TMEM123... 40 8.0
48gb|AC154685.2| Mus musculus BAC clone RP24-321G16 from chromosom... 40 8.0
49gb|AC069383.5| Homo sapiens BAC clone RP11-86O17 from 2, complet... 40 8.0
50emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chr... 40 8.0
51emb|CR354425.7| Zebrafish DNA sequence from clone CH211-93N11 in... 40 8.0
52dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.0
53dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.0
54emb|CR388177.16| Zebrafish DNA sequence from clone CH211-263C8 i... 40 8.0
55gb|AC003995.1|AC003995 Mouse Cosmid ma66a094 from 14D1-D2 (T-Cel... 40 8.0
56gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complet... 40 8.0
57gb|AC165153.2| Mus musculus BAC clone RP23-359L1 from chromosome... 40 8.0
58gb|DQ288927.1| Avian infectious bronchitis virus isolate SAIBK, ... 40 8.0
59emb|AL845528.4| Mouse DNA sequence from clone RP23-25P15 on chro... 40 8.0
60emb|AL137643.1|HSM802412 Homo sapiens mRNA; cDNA DKFZp586A2324 (... 40 8.0
61emb|AL110202.1|HSM800854 Homo sapiens mRNA; cDNA DKFZp586I2022 (... 40 8.0
62emb|AL050161.1|HSM800459 Homo sapiens mRNA; cDNA DKFZp586B0222 (... 40 8.0 
>emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in linkage group 22,
              complete sequence
          Length = 209223

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 94     tacaaatacaatcagttacataga 117
              ||||||||||||||||||||||||
Sbjct: 174423 tacaaatacaatcagttacataga 174400
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>gb|AC108709.3| Homo sapiens 3 BAC RP11-81P15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179223

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 112    catagagttacacagataaaatg 134
              |||||||||||||||||||||||
Sbjct: 111709 catagagttacacagataaaatg 111687
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>emb|BX005254.9| Zebrafish DNA sequence from clone DKEY-81P22 in linkage group 23,
              complete sequence
          Length = 160012

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 406    atcaatattctgtttttattagcttattctt 436
              ||||||||||||||| |||||||||| ||||
Sbjct: 108041 atcaatattctgtttgtattagcttagtctt 108071
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>gb|AC154601.3| Mus musculus BAC clone RP23-342J18 from chromosome 16, complete
             sequence
          Length = 189457

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 86    gacacacatacaaatacaatca 107
             ||||||||||||||||||||||
Sbjct: 54072 gacacacatacaaatacaatca 54093
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>gb|AC157992.7| Mus musculus chromosome 8, clone RP23-302J17, complete sequence
          Length = 196519

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    tctttagaatgataacacaaa 308
              |||||||||||||||||||||
Sbjct: 124219 tctttagaatgataacacaaa 124239
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>gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence
          Length = 101016

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gtttttattagcttattctta 437
             |||||||||||||||||||||
Sbjct: 74522 gtttttattagcttattctta 74542
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>gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like sequence
          Length = 101158

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gtttttattagcttattctta 437
             |||||||||||||||||||||
Sbjct: 74548 gtttttattagcttattctta 74568
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>gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like sequence
          Length = 101095

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gtttttattagcttattctta 437
             |||||||||||||||||||||
Sbjct: 74586 gtttttattagcttattctta 74606
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>gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like sequence
          Length = 101002

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gtttttattagcttattctta 437
             |||||||||||||||||||||
Sbjct: 74508 gtttttattagcttattctta 74528
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>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome
              19
          Length = 413528

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 493    ctgcacacaatctgtctcttgcctg 517
              ||||||||| |||||||||||||||
Sbjct: 182020 ctgcacacactctgtctcttgcctg 181996
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>gb|AC129311.6| Mus musculus BAC clone RP24-404P10 from chromosome 3, complete sequence
          Length = 160537

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   ctggagtaaatatattatgaa 259
             |||||||||||||||||||||
Sbjct: 21586 ctggagtaaatatattatgaa 21566
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>gb|AC182032.3| Spermophilus tridecemlineatus clone VMRC20-712F8, complete sequence
          Length = 172253

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 436   tatgcataaggaaaagaattc 456
             |||||||||||||||||||||
Sbjct: 30640 tatgcataaggaaaagaattc 30660
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>emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 in linkage group 15
              Contains the 3' part of the odz4 gene (odd Oz/ten-m homolog
              4) and a CpG island, complete sequence
          Length = 193544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     aaatacaatcagttacataga 117
              |||||||||||||||||||||
Sbjct: 181376 aaatacaatcagttacataga 181396
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>emb|BX005124.7| Zebrafish DNA sequence from clone CH211-284A16 in linkage group 20
              Contains the 5' end of the xrn2 gene for 5'-3'
              exoribonuclease 2, a novel gene and a CpG island, complete
              sequence
          Length = 148325

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 97     aaatacaatcagttacatagagtta 121
              ||||||||||||||| |||||||||
Sbjct: 142579 aaatacaatcagttaaatagagtta 142555
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>emb|CR387926.5| Zebrafish DNA sequence from clone CH211-247J4 in linkage group 15,
             complete sequence
          Length = 141283

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    aaatacaatcagttacataga 117
             |||||||||||||||||||||
Sbjct: 12289 aaatacaatcagttacataga 12269
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>gb|AC092597.1| Homo sapiens BAC clone RP11-100N21 from 4, complete sequence
          Length = 168177

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 77     tagtcatatgacacacatacaaata 101
              |||||||| ||||||||||||||||
Sbjct: 103523 tagtcataagacacacatacaaata 103499
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>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence
          Length = 199866

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 417    gtttttattagcttattctta 437
              |||||||||||||||||||||
Sbjct: 120724 gtttttattagcttattctta 120744
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>gb|AC011541.7| Homo sapiens chromosome 19 clone LLNLR-258F7, complete sequence
          Length = 39944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 493   ctgcacacaatctgtctcttgcctg 517
             ||||||||| |||||||||||||||
Sbjct: 26315 ctgcacacactctgtctcttgcctg 26291
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>gb|DQ208194.1| Mayetiola destructor Mde8i18_1 gene, partial cds; Mde8i18_2, Mde8i18_3,
             Mde8i18_4, and Mde8i18_5 genes, complete cds; and
             Mde8i18_6 gene, partial cds
          Length = 42642

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    acacacatacaaatacaatca 107
             |||||||||||||||||||||
Sbjct: 33535 acacacatacaaatacaatca 33555
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>emb|CR376750.10| Zebrafish DNA sequence from clone DKEY-92I15 in linkage group 16,
             complete sequence
          Length = 143647

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   aaaccattcagaaaatgaaca 281
             |||||||||||||||||||||
Sbjct: 94410 aaaccattcagaaaatgaaca 94390
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>gb|AC132599.3| Mus musculus BAC clone RP24-131O15 from 3, complete sequence
          Length = 153352

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    ctggagtaaatatattatgaa 259
              |||||||||||||||||||||
Sbjct: 146634 ctggagtaaatatattatgaa 146614
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     agataaaatgacgattggtg 144
               ||||||||||||||||||||
Sbjct: 2263164 agataaaatgacgattggtg 2263183
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     agataaaatgacgattggtg 144
               ||||||||||||||||||||
Sbjct: 2264016 agataaaatgacgattggtg 2264035
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>gb|AY514485.1| Avian infectious bronchitis virus strain Cal99, complete genome
          Length = 27693

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 278   aacaacaagttctttagaatgata 301
             |||| |||||||||||||||||||
Sbjct: 13401 aacaccaagttctttagaatgata 13378
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>gb|AC162613.2| Mus musculus chromosome 19, clone RP24-270E10, complete sequence
          Length = 147306

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    gacacacatacaaatacaat 105
             ||||||||||||||||||||
Sbjct: 96453 gacacacatacaaatacaat 96434
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>gb|AC079799.7| Homo sapiens BAC clone RP11-665O4 from 7, complete sequence
          Length = 172495

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   aaagaaaatatagcatttta 388
             ||||||||||||||||||||
Sbjct: 74552 aaagaaaatatagcatttta 74571
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>gb|AC145924.3| Pan troglodytes BAC clone RP43-19G18 from 7, complete sequence
          Length = 205381

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    aaagaaaatatagcatttta 388
              ||||||||||||||||||||
Sbjct: 120591 aaagaaaatatagcatttta 120572
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>gb|AC141639.3| Mus musculus BAC clone RP23-354J7 from chromosome 18, complete sequence
          Length = 216358

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 87    acacacatacaaatacaatcagtt 110
             ||||||| ||||||||||||||||
Sbjct: 43296 acacacacacaaatacaatcagtt 43319
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>emb|BX649517.15| Zebrafish DNA sequence from clone DKEY-174D5 in linkage group 8, complete
              sequence
          Length = 194350

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     acacacatacaaatacaatc 106
              ||||||||||||||||||||
Sbjct: 180164 acacacatacaaatacaatc 180145
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>gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome 7, complete
            sequence
          Length = 131080

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tatagtcatatgacacacat 94
            ||||||||||||||||||||
Sbjct: 6737 tatagtcatatgacacacat 6756
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>gb|AC004027.1| Homo sapiens PAC clone RP4-791I21 from 7, complete sequence
          Length = 133191

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  aaagaaaatatagcatttta 388
            ||||||||||||||||||||
Sbjct: 2660 aaagaaaatatagcatttta 2641
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>gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, complete sequence
          Length = 232012

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gacacacatacaaatacaat 105
              ||||||||||||||||||||
Sbjct: 225103 gacacacatacaaatacaat 225084
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>gb|BC032296.1| Homo sapiens transmembrane protein 123, mRNA (cDNA clone MGC:40439
            IMAGE:4340763), complete cds
          Length = 3282

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gaaagaaaatatagcatttt 387
            ||||||||||||||||||||
Sbjct: 1842 gaaagaaaatatagcatttt 1823
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>emb|CR848041.4| Zebrafish DNA sequence from clone DKEY-4K21 in linkage group 21, complete
              sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    atcaatattctgtttttatt 425
              ||||||||||||||||||||
Sbjct: 134361 atcaatattctgtttttatt 134380
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>emb|CR407548.6| Zebrafish DNA sequence from clone DKEY-166N22 in linkage group 25,
              complete sequence
          Length = 136155

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    aaatatattatgaacaaaccattc 269
              |||||||||| |||||||||||||
Sbjct: 135925 aaatatattaggaacaaaccattc 135902
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>emb|CR788323.5| Zebrafish DNA sequence from clone DKEYP-71G11 in linkage group 2,
             complete sequence
          Length = 107248

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   acacaatctgtctcttgcct 516
             ||||||||||||||||||||
Sbjct: 83923 acacaatctgtctcttgcct 83904
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>gb|AC068506.10| Homo sapiens chromosome 18, clone RP11-96A15, complete sequence
          Length = 175885

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     aagtgtataatcagctcctgctat 77
              ||||||||||| ||||||||||||
Sbjct: 171158 aagtgtataatgagctcctgctat 171135
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>emb|BX511228.8| Zebrafish DNA sequence from clone DKEY-174F1 in linkage group 21,
             complete sequence
          Length = 64586

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   atcaatattctgtttttatt 425
             ||||||||||||||||||||
Sbjct: 21346 atcaatattctgtttttatt 21365
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>dbj|AK075420.1| Homo sapiens cDNA PSEC0111 fis, clone NT2RP2006028, moderately
            similar to Pro-oncosis receptor inducing membrane injury
            gene
          Length = 3362

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gaaagaaaatatagcatttt 387
            ||||||||||||||||||||
Sbjct: 1939 gaaagaaaatatagcatttt 1920
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>emb|CR598031.1| full-length cDNA clone CS0DD009YF13 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1577

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gaaagaaaatatagcatttt 387
           ||||||||||||||||||||
Sbjct: 174 gaaagaaaatatagcatttt 155
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>gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, complete sequence
          Length = 187279

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   aaccttccataggcttccac 196
             ||||||||||||||||||||
Sbjct: 64335 aaccttccataggcttccac 64354
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>emb|BX470132.6| Zebrafish DNA sequence from clone DKEY-202L16 in linkage group 3,
             complete sequence
          Length = 163404

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    aatacaatcagttacatagagtta 121
             |||||||||||||| |||||||||
Sbjct: 11699 aatacaatcagttaaatagagtta 11722
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>emb|AL954357.16| Zebrafish DNA sequence from clone DKEY-46A10 in linkage group 8,
             complete sequence
          Length = 199804

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acacacatacaaatacaatc 106
             ||||||||||||||||||||
Sbjct: 99817 acacacatacaaatacaatc 99836
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>gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta locus  section 3 of 4 of the
              complete region
          Length = 400099

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 87     acacacatacaaatacaatcagtt 110
              ||||||| ||||||||||||||||
Sbjct: 291619 acacacacacaaatacaatcagtt 291642
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>gb|AC022601.6| Homo sapiens chromosome 18, clone RP11-138H11, complete sequence
          Length = 158885

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     aagtgtataatcagctcctgctat 77
              ||||||||||| ||||||||||||
Sbjct: 124838 aagtgtataatgagctcctgctat 124861
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>gb|AY008283.1| Homo sapiens porimin mRNA, complete cds
          Length = 3338

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gaaagaaaatatagcatttt 387
            ||||||||||||||||||||
Sbjct: 1893 gaaagaaaatatagcatttt 1874
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>ref|NM_052932.1| Homo sapiens transmembrane protein 123 (TMEM123), mRNA
          Length = 3338

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gaaagaaaatatagcatttt 387
            ||||||||||||||||||||
Sbjct: 1893 gaaagaaaatatagcatttt 1874
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>gb|AC154685.2| Mus musculus BAC clone RP24-321G16 from chromosome 17, complete
             sequence
          Length = 162362

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 423   attagcttattcttatgcataagg 446
             ||||| ||||||||||||||||||
Sbjct: 45785 attagtttattcttatgcataagg 45762
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>gb|AC069383.5| Homo sapiens BAC clone RP11-86O17 from 2, complete sequence
          Length = 111837

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    tatgcataaggaaaagaatt 455
              ||||||||||||||||||||
Sbjct: 104012 tatgcataaggaaaagaatt 103993
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>emb|AL808104.14| Mouse DNA sequence from clone RP23-30M20 on chromosome 2, complete
             sequence
          Length = 199494

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    acacacatacaaatacaatc 106
             ||||||||||||||||||||
Sbjct: 51095 acacacatacaaatacaatc 51076
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>emb|CR354425.7| Zebrafish DNA sequence from clone CH211-93N11 in linkage group 25,
              complete sequence
          Length = 161571

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    aaatatattatgaacaaaccattc 269
              |||||||||| |||||||||||||
Sbjct: 146639 aaatatattaggaacaaaccattc 146616
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>dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-864G5, complete
              sequence
          Length = 185984

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    gaaagaaaatatagcatttt 387
              ||||||||||||||||||||
Sbjct: 173103 gaaagaaaatatagcatttt 173122
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>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete
             sequence
          Length = 214483

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   gaaagaaaatatagcatttt 387
             ||||||||||||||||||||
Sbjct: 49048 gaaagaaaatatagcatttt 49067
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>emb|CR388177.16| Zebrafish DNA sequence from clone CH211-263C8 in linkage group 2,
             complete sequence
          Length = 79793

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   ctacaactgctgcacacaat 503
             ||||||||||||||||||||
Sbjct: 62270 ctacaactgctgcacacaat 62251
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>gb|AC003995.1|AC003995 Mouse Cosmid ma66a094 from 14D1-D2 (T-Cell Receptor Alpha Locus),
             complete sequence
          Length = 36254

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 87    acacacatacaaatacaatcagtt 110
             ||||||| ||||||||||||||||
Sbjct: 10235 acacacacacaaatacaatcagtt 10258
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>gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complete sequence
          Length = 217353

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tatagtcatatgacacacat 94
              ||||||||||||||||||||
Sbjct: 157340 tatagtcatatgacacacat 157359
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>gb|AC165153.2| Mus musculus BAC clone RP23-359L1 from chromosome 17, complete sequence
          Length = 219548

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 423    attagcttattcttatgcataagg 446
              ||||| ||||||||||||||||||
Sbjct: 181839 attagtttattcttatgcataagg 181816
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>gb|DQ288927.1| Avian infectious bronchitis virus isolate SAIBK, complete genome
          Length = 27534

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 278   aacaacaagttctttagaatgata 301
             |||| |||||||||||||||||||
Sbjct: 13390 aacaccaagttctttagaatgata 13367
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>emb|AL845528.4| Mouse DNA sequence from clone RP23-25P15 on chromosome 2, complete
              sequence
          Length = 196976

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    tagaatgataacacaaattc 311
              ||||||||||||||||||||
Sbjct: 185421 tagaatgataacacaaattc 185402
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>emb|AL137643.1|HSM802412 Homo sapiens mRNA; cDNA DKFZp586A2324 (from clone DKFZp586A2324)
          Length = 1562

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gaaagaaaatatagcatttt 387
           ||||||||||||||||||||
Sbjct: 109 gaaagaaaatatagcatttt 90
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>emb|AL110202.1|HSM800854 Homo sapiens mRNA; cDNA DKFZp586I2022 (from clone DKFZp586I2022)
          Length = 2535

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gaaagaaaatatagcatttt 387
            ||||||||||||||||||||
Sbjct: 1095 gaaagaaaatatagcatttt 1076
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>emb|AL050161.1|HSM800459 Homo sapiens mRNA; cDNA DKFZp586B0222 (from clone DKFZp586B0222)
          Length = 1590

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gaaagaaaatatagcatttt 387
           ||||||||||||||||||||
Sbjct: 150 gaaagaaaatatagcatttt 131


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,764,970
Number of Sequences: 3902068
Number of extensions: 6764970
Number of successful extensions: 132162
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131982
Number of HSP's gapped (non-prelim): 180
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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