ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags17m01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL160155.19| Human DNA sequence from clone RP11-461N23 on chromosome 13 Contains part of a novel gene (FLJ30001), a H2A histone family, pseudogene, the GPR18 gene for G protein-coupled receptor 18, the EBI2 gene for Epstein-Barr virus induced gene 2 (lymphocyte-specific G protein-coupled receptor), two novel genes and a CpG island, complete sequence Length = 149478 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aatgcatagataagcatgtacaca 122 |||||||||||||||| ||||||| Sbjct: 10414 aatgcatagataagcaggtacaca 10391
>gb|BC063214.1| Xenopus tropicalis integrin beta 1 (fibronectin receptor beta), mRNA (cDNA clone MGC:76178 IMAGE:5335695), complete cds Length = 3630 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 catgtacacaatgagccac 131 ||||||||||||||||||| Sbjct: 1017 catgtacacaatgagccac 1035
>ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) on chromosome 20 Length = 44507 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 atgcatagataagcatgta 118 ||||||||||||||||||| Sbjct: 19817 atgcatagataagcatgta 19799
>gb|AY313693.1| Limnonectes kadarsani specimen_voucher LSU81722 tRNA-Phe gene, partial sequence; 12S ribosomal RNA and tRNA-Val genes, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products Length = 2411 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 aatgagccacatataacaa 140 ||||||||||||||||||| Sbjct: 1732 aatgagccacatataacaa 1750
>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 3/11 Length = 340493 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 atgcatagataagcatgta 118 ||||||||||||||||||| Sbjct: 304087 atgcatagataagcatgta 304069
>ref|NM_203829.1| Xenopus tropicalis integrin beta 1 (fibronectin receptor beta) (itgb1), mRNA Length = 3630 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 catgtacacaatgagccac 131 ||||||||||||||||||| Sbjct: 1017 catgtacacaatgagccac 1035
>gb|AC092923.8| Homo sapiens 3 BAC RP11-145K15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150216 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 103 catagataagcatgtacacaatg 125 ||||| ||||||||||||||||| Sbjct: 89923 catagctaagcatgtacacaatg 89901
>gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, complete sequence Length = 165879 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 atgagccacatataacaaa 141 ||||||||||||||||||| Sbjct: 35027 atgagccacatataacaaa 35009
>gb|AC021561.8| Homo sapiens chromosome 18, clone RP11-766D3, complete sequence Length = 174508 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 atgagccacatataacaaa 141 ||||||||||||||||||| Sbjct: 153265 atgagccacatataacaaa 153247
>gb|AC034159.7| Homo sapiens BAC clone RP11-344G13 from 4, complete sequence Length = 202555 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 atgcatagataagcatgta 118 ||||||||||||||||||| Sbjct: 59153 atgcatagataagcatgta 59171
>gb|AC092672.3| Homo sapiens BAC clone RP11-603F24 from 2, complete sequence Length = 80521 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 agataagcatgtacacaat 124 ||||||||||||||||||| Sbjct: 4697 agataagcatgtacacaat 4715
>emb|AJ871364.1| Yersinia aldovae O-antigen gene cluster, strain A125 Length = 13970 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 atcatcaaatactaatgca 104 ||||||||||||||||||| Sbjct: 5493 atcatcaaatactaatgca 5475
>emb|CT485679.1| Xenopus tropicalis finished cDNA, clone TEgg135f07 Length = 3501 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 catgtacacaatgagccac 131 ||||||||||||||||||| Sbjct: 928 catgtacacaatgagccac 946 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 798,704 Number of Sequences: 3902068 Number of extensions: 798704 Number of successful extensions: 55581 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55563 Number of HSP's gapped (non-prelim): 18 length of query: 144 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 123 effective length of database: 17,151,101,840 effective search space: 2109585526320 effective search space used: 2109585526320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
