>Y818_SYNY3 (P74038) Hypothetical UPF0011 protein sll0818|
          Length = 279

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 55/142 (38%), Positives = 75/142 (52%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     R R+  L+  A+E  T I Y  PH +   L D  +  G  RS  +ARE+TK HE
Sbjct: 134 FLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTFLGQERSLTVARELTKYHE 193

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTA 307
           +FWRGTL  A   F    PKGE  ++I G +       S++ L  ELR LMAKG   S A
Sbjct: 194 QFWRGTLQTAIAYFTENTPKGEFCLVIAGATPEDRPSFSEENLRDELRSLMAKGLTRSQA 253

Query: 306 VKLVAEATSAKKKDVYALALRV 241
            + +AE T   ++ +Y L+L +
Sbjct: 254 SRQLAEETKLPRRQLYQLSLEL 275

>Y552_XYLFA (Q9PFV5) Hypothetical UPF0011 protein Xf0552|
          Length = 273

 Score = 66.2 bits (160), Expect = 9e-11
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
 Frame = -3

Query: 645 SRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTL 466
           +R+ RL   A E  T IFY   H I + L D A+ FG  R+ V+ARE+TK+ E    GTL
Sbjct: 144 ARRDRLTHLAHEPRTLIFYEASHRIAECLTDLATIFGSMRAAVVARELTKIFETVLDGTL 203

Query: 465 GEANEAFAT--RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVA 292
                  A    Q KGE  I++ G +     K ++      +  L+ +    S+A KL A
Sbjct: 204 ATLQTQVANDDNQRKGEFVIIVQGAADQDAAKITEG---RRVYALLKEHLPPSSAAKLAA 260

Query: 291 EATSAKKKDVY 259
           E T A +K +Y
Sbjct: 261 EITGAPRKALY 271

>Y1588_XYLFT (Q87B70) Hypothetical UPF0011 protein PD1588|
          Length = 273

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
 Frame = -3

Query: 645 SRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTL 466
           +R+ RL   A E  T IFY   H I + L D A+ FG  R  V+ARE+TK+ E    GTL
Sbjct: 144 ARRDRLTHLAHEPRTLIFYEASHRIAECLTDLATIFGSMRIAVVARELTKIFETVLDGTL 203

Query: 465 GEANEAFAT--RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVA 292
                  A    Q KGE  I++ G +     K ++      +  L+ +    S+A KL A
Sbjct: 204 ATLQTQVANDENQRKGEFVIIVQGAADQDAAKITEG---RRIYALLKEHLPPSSAAKLAA 260

Query: 291 EATSAKKKDVY 259
           E T A +K +Y
Sbjct: 261 EITGAPRKALY 271

>Y049_BACHD (Q9KGL2) Hypothetical UPF0011 protein BH0049|
          Length = 289

 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R  + R+  LE +     T IFY  PH ++  L D     G+ R   I RE+TK +E
Sbjct: 146 FLPRQKKQRRQALEETKPTKATLIFYESPHRLKDTLDDMLLILGN-RHVSICRELTKTYE 204

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDGNSISIVEKPSDDFLE-----HELRELMAKGH 322
           EF RGTL EA         KGE  ++++GN   +  +P + + E       +   +A G 
Sbjct: 205 EFLRGTLEEAVHWAREATIKGEFCLIVEGNGEKV--EPEEVWWESLSPVQHVEHYIALGF 262

Query: 321 ALSTAVKLVAEATSAKKKDVY 259
               A+K VA      K+D+Y
Sbjct: 263 RSKEAIKQVATDRGVPKRDIY 283

>YABC_BACSU (P37544) Hypothetical UPF0011 protein yabC|
          Length = 292

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R  + +K  LE   +   T IFY  PH +++ L   A   GD R   + RE+TK +E
Sbjct: 147 FLNRQKKEKKKELEALKKRQETIIFYEAPHRLKETLSAMAEILGD-REIAVTRELTKKYE 205

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDGNSISIVEKPSDDF----LEHELRELMAKGHA 319
           EF RGT+ E        Q +GE  ++++G++   V++    +     +  +   ++KG  
Sbjct: 206 EFIRGTISEVIGWANEDQIRGEFCLVVEGSNNEEVDEEEQWWETLTAKEHVEHYISKGAT 265

Query: 318 LSTAVKLVAEATSAKKKDVY 259
              A+K  A   +  K++VY
Sbjct: 266 SKEAIKKAAVDRNVPKREVY 285

>Y456_STRP8 (Q8P2A6) Hypothetical UPF0011 protein spyM18_0456|
          Length = 287

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R    +KA  E       TQ+FY  P+ I+  L +  + +GD R  V+ RE+TKL E
Sbjct: 146 FLSRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFE 204

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDGNSI-SIVEKPSDDFLEHELRELMAKGHALST 310
           E+ RG++ E          KGE  +++ G  + S VE  +D  L   +++ +  G   + 
Sbjct: 205 EYQRGSISEILSYLEETSLKGECLLIVAGAQVDSEVELTADVDLVSLVQKEIQAGAKPNQ 264

Query: 309 AVKLVAEATSAKKKDVY 259
           A+K +A+A    ++++Y
Sbjct: 265 AIKTIAKAYQVNRQELY 281

>Y292_STRP3 (Q8K8H1) Hypothetical UPF0011 protein SpyM3_0292/SPs1565|
          Length = 287

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R    +KA  E       TQ+FY  P+ I+  L +  + +GD R  V+ RE+TKL E
Sbjct: 146 FLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFE 204

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDGNSI-SIVEKPSDDFLEHELRELMAKGHALST 310
           E+ RG++ E          KGE  +++ G  + S VE  +D  L   +++ +  G   + 
Sbjct: 205 EYQRGSISEILSYLEETSLKGECLLIVAGAQVDSEVELTADVDLVSLVQKEIQAGAKPNQ 264

Query: 309 AVKLVAEATSAKKKDVY 259
           A+K +A+A    ++++Y
Sbjct: 265 AIKTIAKAYQVNRQELY 281

>Y406_STRP1 (Q9A186) Hypothetical UPF0011 protein SPy0406/M5005_Spy0335|
          Length = 287

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R    +KA  E       TQ+FY  P+ I+  L +  + +GD R  V+ RE+TKL E
Sbjct: 146 FLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFE 204

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDG-NSISIVEKPSDDFLEHELRELMAKGHALST 310
           E+ RG++ E          KGE  +++ G  + S VE  +D  L   +++ +  G   + 
Sbjct: 205 EYQRGSISEILSYLEETPLKGECLLIVAGAQADSEVELTADVDLVSLVQKEIQAGAKPNQ 264

Query: 309 AVKLVAEATSAKKKDVY 259
           A+K +A+A    ++++Y
Sbjct: 265 AIKTIAKAYQVNRQELY 281

>Y709_THEMA (Q9WZG8) Hypothetical UPF0011 protein TM0709|
          Length = 222

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = -3

Query: 651 GRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRG 472
           G++R+  L+   +E    +F+  P  +   L D     GD R   IARE+TKLH+EF+RG
Sbjct: 138 GKNRRRLLKSLKKENRVIVFFESPERLLSTLRDILEIIGD-REVFIAREMTKLHQEFFRG 196

Query: 471 TLGEANEAFATRQPKGEITILIDG 400
            + EA   F  ++P GEIT+++ G
Sbjct: 197 KVSEAISHFEKKKPLGEITVVLSG 220

>Y361_STRP6 (Q5XDL7) Hypothetical UPF0011 protein M6_Spy0361|
          Length = 287

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R    +KA  E       TQ+F   P+ I+  L +  + +GD R  V+ RE+TKL E
Sbjct: 146 FLPRKAGQQKAFFEDKHHYTETQMFCESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFE 204

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDGNSI-SIVEKPSDDFLEHELRELMAKGHALST 310
           E+ RG++ E          KGE  +++ G  + S +E  +D  L   +++ +  G   + 
Sbjct: 205 EYQRGSISEILSYLEETPLKGECLLIVAGAQVDSEIELTADVDLVSLVQKEIQAGAKPNQ 264

Query: 309 AVKLVAEATSAKKKDVY 259
           A+K +A+A    ++++Y
Sbjct: 265 AIKTIAKAYQVNRQELY 281

>Y4422_PSEAE (Q9HVZ3) Hypothetical UPF0011 protein PA4422|
          Length = 282

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F       R++RL+    E  T IFY  PH + + L D    FG  R  V+ARE++K  E
Sbjct: 136 FLPAKAAGRRSRLQAVQEEPRTLIFYEAPHRLLESLADMRDVFGGERRAVLARELSKTFE 195

Query: 486 EFWRGTLGEANE--AFATRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALS 313
                 L E ++  A  + Q +GE  +L+ G      E+         L  L+A+   L 
Sbjct: 196 TIRSLPLAELHDWVASDSNQQRGECVVLVAGWQAPEGEESIGAEALRVLDLLLAE-LPLK 254

Query: 312 TAVKLVAEATSAKKKDVYALALRVFGK 232
            A  L AE T  +K  +Y  AL+  GK
Sbjct: 255 KAAALAAEITGVRKNLLYQQALQRQGK 281

>Y1030_MYCBO (P0A641) Hypothetical UPF0011 protein Mb1030|
          Length = 285

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 34/89 (38%), Positives = 47/89 (52%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R G +R+A L   A E  T +F+  P  +   L DA    G +R   I RE+TK+HE
Sbjct: 138 FAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGARPAAICRELTKVHE 197

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDG 400
           E  RG+L E    +A     GEIT+++ G
Sbjct: 198 EVVRGSLDEL-AIWAAGGVLGEITVVVAG 225

>Y1003_MYCTU (P0A640) Hypothetical UPF0011 protein Rv1003/MT1032|
          Length = 285

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 34/89 (38%), Positives = 47/89 (52%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F  R G +R+A L   A E  T +F+  P  +   L DA    G +R   I RE+TK+HE
Sbjct: 138 FAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGARPAAICRELTKVHE 197

Query: 486 EFWRGTLGEANEAFATRQPKGEITILIDG 400
           E  RG+L E    +A     GEIT+++ G
Sbjct: 198 EVVRGSLDEL-AIWAAGGVLGEITVVVAG 225

>Y1654_HAEIN (P45298) Hypothetical UPF0011 protein HI1654|
          Length = 283

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     ++RK +LE  A E  T IFY   H I   L D  +  G+ R  V+ARE+TK  E
Sbjct: 138 FLPAKSKARKDKLENIAEEDRTLIFYESTHRILDTLEDMQAVLGEERYIVLAREMTKTWE 197

Query: 486 EFWRGTLGEANEAFA--TRQPKGEITILIDGNSISIVEKPSDDFLEHELR--ELMAKGHA 319
                T+    E       + KGE+ ++++G   S     +D+     ++  EL+A+   
Sbjct: 198 TITGNTIKNLREWLLEDPNRTKGEMVLIVEGKPKS---DNNDEISPQAVKALELIAEELP 254

Query: 318 LSTAVKLVAEATSAKKKDVYALAL 247
           L  A  +VAE    KK  +Y   L
Sbjct: 255 LKKAAAIVAELYGYKKNALYQFGL 278

>YFM4_MICOL (Q08329) Hypothetical UPF0011 protein in fmrO 3'region (ORF-4)|
           (Fragment)
          Length = 313

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
 Frame = -3

Query: 678 HLWVFYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREIT 499
           H   F  R   +R+A L        T IF+  PH I   L D A+  GD R   +AR +T
Sbjct: 159 HYVGFLPRKEAARRAALTALRSTPATLIFFEAPHRIVAMLADLAAVLGD-RPAALARNLT 217

Query: 498 KLHEEFWRGTLGEANEAFATRQ-PKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGH 322
           K  EEF RG L E        Q  +G+ T+++ G+  +  ++  D  L   L E + +  
Sbjct: 218 KDDEEFLRGRLNELTARLRVEQVVRGQFTVVVAGSPEAHADE--DRALAARLTETLVRHG 275

Query: 321 ALSTAVK-LVAEATSAKKKDVY 259
           A +  ++ +V E T   +  VY
Sbjct: 276 AEARLIREVVREVTGLPRNWVY 297

>Y582_VIBCH (Q9KUD9) Hypothetical UPF0011 protein VC0582|
          Length = 288

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     ++RK +L   A+ + T IFY  PH I + L D     G  R  V+ARE+TK  E
Sbjct: 144 FLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGEREVVLARELTKTFE 203

Query: 486 EFWRGTLGEANEAFA--TRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALS 313
                 L E     A    + KGE+ +L+ G   +  ++  D+ L      ++ K   L 
Sbjct: 204 TIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDAGEQQLPDEAL--RTLTILTKELPLK 261

Query: 312 TAVKLVAEATSAKKKDVYALALRVFGK 232
            A  LVAE    KK  +Y   L   G+
Sbjct: 262 KAAALVAEIHQLKKNALYKWGLENLGE 288

>Y645_PASMU (Q9CN04) Hypothetical UPF0011 protein PM0645|
          Length = 281

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     ++R  +L+  A E  T IFY   H I   L D   + G  R  V+AREITK  E
Sbjct: 138 FLPAKSKARCDKLQNLAEEERTLIFYESTHRILDTLADIEKTLGAERYVVLAREITKTWE 197

Query: 486 EFWRGTLGEANEAFA--TRQPKGEITILIDGNSISIVEKPSDDFLEHELR--ELMAKGHA 319
                 +    +       + KGE+ ++I+G     V++ +D+     L+  EL+++   
Sbjct: 198 TIVGDNVANLRQWLGEDPNRTKGEMVLIIEGK----VKQETDEINPQALKALELISQSLP 253

Query: 318 LSTAVKLVAEATSAKKKDVYALALRVF 238
           L  A  +VAE    KK  +Y   L  F
Sbjct: 254 LKKAAAIVAEIYGYKKNALYQYGLEHF 280

>YRAL_ECOLI (P67087) Hypothetical UPF0011 protein yraL|
          Length = 286

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     + R+  L+    E  T IFY   H +   L D  +  G+SR  V+ARE+TK  E
Sbjct: 144 FLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWE 203

Query: 486 EFWRGTLGE--ANEAFATRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALS 313
                 +GE  A       + KGE+ ++++G+     + P+D         L+     L 
Sbjct: 204 TIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADAL---RTLALLQAELPLK 260

Query: 312 TAVKLVAEATSAKKKDVYALALRVFG 235
            A  L AE    KK  +Y  AL   G
Sbjct: 261 KAAALAAEIHGVKKNALYKYALEQQG 286

>YRAL_ECO57 (P67088) Hypothetical UPF0011 protein yraL|
          Length = 286

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     + R+  L+    E  T IFY   H +   L D  +  G+SR  V+ARE+TK  E
Sbjct: 144 FLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWE 203

Query: 486 EFWRGTLGE--ANEAFATRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALS 313
                 +GE  A       + KGE+ ++++G+     + P+D         L+     L 
Sbjct: 204 TIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADAL---RTLALLQAELPLK 260

Query: 312 TAVKLVAEATSAKKKDVYALALRVFG 235
            A  L AE    KK  +Y  AL   G
Sbjct: 261 KAAALAAEIHGVKKNALYKYALEQQG 286

>Y4632_RHILO (Q98DM9) Hypothetical UPF0011 protein mlr4632|
          Length = 294

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
 Frame = -3

Query: 642 RKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLG 463
           R  RLE       T IF+  P  + + L     + G  R   I RE+TK  EE   GTL 
Sbjct: 154 RLTRLEALKAVPATLIFFESPRRLAESLGAMVEALGGERKAAIGRELTKTFEEMRTGTLR 213

Query: 462 EANEAFATRQ-PKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEA 286
              + +A    PKGEI + + G + +  ++P+D  ++  L  L A+  A S A    A+ 
Sbjct: 214 ALADHYAAADTPKGEIVVCV-GPAEAKADEPAD--IDRLLLSLAAEMPA-SKAASEAAKM 269

Query: 285 TSAKKKDVYALALRV 241
           T  +K+ +Y   L +
Sbjct: 270 TGGQKQALYRRLLEL 284

>Y342_NEIMA (Q9JWJ7) Hypothetical UPF0011 protein NMA0342|
          Length = 291

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = -3

Query: 615 REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFAT- 439
           R A   + +  PH I   L D A  F + R  ++AREITK  E F  GT+GE   A A  
Sbjct: 165 RVAFPVVMFETPHRIGATLADMAELFPERR-LMLAREITKTFETFLSGTVGEIQTALAAD 223

Query: 438 -RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDV 262
             Q +GE+ +++        E  S+      + +++        A +L A+ T   KK +
Sbjct: 224 GNQSRGEMVLVLYPAQDEKHEGLSES--AQNIMKILTAELPTKQAAELAAKITGEGKKAL 281

Query: 261 YALAL 247
           Y LAL
Sbjct: 282 YDLAL 286

>Y2088_NEIMB (Q9JXE3) Hypothetical UPF0011 protein NMB2088|
          Length = 291

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = -3

Query: 615 REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFAT- 439
           R A   + +  PH I   L D A  F + R  ++AREITK  E F  GT+GE   A +  
Sbjct: 165 RAAFPIVMFETPHRIGATLADMAELFPERR-LMLAREITKTFETFLSGTVGEIQTALSAD 223

Query: 438 -RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDV 262
             Q +GE+ +++        E  S+      + +++        A +L A+ T   KK +
Sbjct: 224 GNQSRGEMVLVLYPAQDEKHEGLSES--AQNIMKILTAELPTKQAAELAAKITGEGKKAL 281

Query: 261 YALAL 247
           Y LAL
Sbjct: 282 YDLAL 286

>Y747_RICPR (Q9ZCJ3) Hypothetical UPF0011 protein RP747|
          Length = 280

 Score = 46.2 bits (108), Expect(2) = 4e-05
 Identities = 37/116 (31%), Positives = 59/116 (50%)
 Frame = -3

Query: 603 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 424
           T IF+     +   L+ A   FG+   CV ARE+TK+++E   G + E  E +     KG
Sbjct: 158 TLIFFDTASRLINTLLLAKEIFGNREICV-ARELTKIYQETKTGDIDEIIEFYKNNILKG 216

Query: 423 EITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYA 256
           EI +LI GN + +  K  +  LE  +   ++K  +  T ++L  +    K KDVY+
Sbjct: 217 EIVLLISGN-VQVQNKQIN--LEKFIEFCLSKNLSSKTIIELAYD----KFKDVYS 265



 Score = 20.8 bits (42), Expect(2) = 4e-05
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 682 FTFVGFLPKAWSIKK 638
           F F GFLPK    KK
Sbjct: 132 FLFSGFLPKTIESKK 146

>Y056_MYCGE (P47302) Hypothetical UPF0011 protein MG056|
          Length = 277

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
 Frame = -3

Query: 639 KARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE-EFWRGTLG 463
           K  L     +  T +F+   H ++  L    + F ++    I RE+TKLHE  +W  T  
Sbjct: 147 KNYLSTYQNQKSTIVFFEAVHRLENTLETVKNVFKNN-DVFIGRELTKLHESHYWFNT-- 203

Query: 462 EANEAFATRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEAT 283
            +         KGE  I+ID  +I+     S+ +L +E+++LM  G  L  A   +A+  
Sbjct: 204 -SENTLPDITLKGEFVIVIDNQNINHQTLSSNQYLVYEIKKLMDIGVKLKDACNYLAKKM 262

Query: 282 SAKKKDVYAL 253
             K   +Y L
Sbjct: 263 HLKSSMLYTL 272

>Y975_TREPA (O83940) Hypothetical UPF0011 protein TP0975|
          Length = 274

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F   H   R+ARL     + V  + Y  P+ +Q+ L D  +   +S+  V+ RE+TK+HE
Sbjct: 183 FLSPHPGRRRARLVQLCAQRVAFVLYESPYRVQKLLEDLVAVAPESQ-VVLGRELTKVHE 241

Query: 486 EFWRGTLGEANEAFATR-QPKGEITILI 406
           E   GT     E+F  R + +GE  +L+
Sbjct: 242 ELCVGTALRVMESFCARTRVRGECVLLV 269

>Y083_BUCAP (Q8KA29) Hypothetical UPF0011 protein BUsg083|
          Length = 285

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
 Frame = -3

Query: 642 RKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLG 463
           R+  L+   +E  T IFY   H I + + D   +  ++R  VIAREITK  E  +     
Sbjct: 148 RRDLLKSLKKEIRTIIFYESKHRILESIKDIIETIDENRYLVIAREITKKWEYIYG---A 204

Query: 462 EANEAFA------TRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALS--TA 307
           +AN   +      +R  KGEI I+IDG      E  + D     +  L    + LS   +
Sbjct: 205 KANIILSWLKEDQSRYKKGEIVIIIDG----FKELKNKDISAKAINTLTILRNFLSLKQS 260

Query: 306 VKLVAEATSAKKKDVYALALR 244
           V + ++    KK D+Y  A++
Sbjct: 261 VFITSKIHKIKKNDLYQHAIK 281

>Y071_MYCPN (P75046) Hypothetical UPF0011 protein MG056 homolog (D09_orf276)|
          Length = 276

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
 Frame = -3

Query: 603 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE-EFWRGTLGEANEAFATRQPK 427
           T + +   H +QQ L    + F ++    + RE+TKLHE  +W  T     +       K
Sbjct: 159 TIVLFEAVHRLQQTLEVIQTVFSNTE-VFVGRELTKLHESHYWFNTSAPLPDITL----K 213

Query: 426 GEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYAL 253
           GE  I+I+ +    V + SD  L+ E+ +L+  G  +  A   +A+    K   +Y L
Sbjct: 214 GEFVIVINNHHTQPVGQYSDQLLKQEITQLVQMGVKVKDACHYLAKRLQLKSNKLYTL 271

>Y091_BUCAI (P57192) Hypothetical UPF0011 protein BU091|
          Length = 282

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
 Frame = -3

Query: 666 FYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE 487
           F     +SR   L     E  T IFY   H I + + D       +R  VIARE+TK  E
Sbjct: 139 FLPSRKKSRCDLLHSLKEETRTIIFYESKHRILESIKDIIEQIDKNRHIVIAREMTKKWE 198

Query: 486 EFWRGTLGEANEAFATR--QPKGEITILIDG----NSISIVEKPSDDFLEHELRELMAKG 325
             +        E       + KGE+ I+IDG     + ++ +K  D F       ++ K 
Sbjct: 199 SIYGAKASLILEWLKENKYRYKGEMVIIIDGFKKLKNYTLSKKILDTF------SILRKF 252

Query: 324 HALSTAVKLVAEATSAKKKDVYALALR 244
            +L T+V + A+     K  +Y   ++
Sbjct: 253 FSLKTSVLITAQIHDINKNKLYQYVIK 279

>Y552_HELPY (P56204) Hypothetical UPF0011 protein HP0552|
          Length = 287

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
 Frame = -3

Query: 648 RSRKARLEVSA--------REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKL 493
           +S++ RL+++          E    +FY  PH + + L D  +          A+E+TKL
Sbjct: 149 KSKERRLKIAKILNALAYLEEKTPVVFYESPHRLLETLKDL-NDLAKGMHLFAAKELTKL 207

Query: 492 HEEFWRGTLGEANEAFATRQPKGEITILI 406
           H++++ G + +  E       +GE  +++
Sbjct: 208 HQQYYLGEVSQIIERLQQSTIQGEWVLVL 236

>Y540_MYCPU (Q98RF5) Hypothetical UPF0011 protein MYPU_0540|
          Length = 222

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 25/91 (27%), Positives = 42/91 (46%)
 Frame = -3

Query: 681 SHLWVFYQRHGRSRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREI 502
           S L     + G+ +    ++SA   ++ I YV  + + Q L D    FG +    + RE+
Sbjct: 129 SFLGFLNDKTGKRKNELKKLSA--GISYISYVSKYKLIQTLKDLKEVFGLNVEVFLTREL 186

Query: 501 TKLHEEFWRGTLGEANEAFATRQPKGEITIL 409
           TK  E  + GT+ E  +       KGE T++
Sbjct: 187 TKKFENDYTGTIDEIIDQLG-ESIKGEFTLI 216

>Y085_BUCBP (Q89AY5) Hypothetical UPF0011 protein bbp_085|
          Length = 292

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 4/137 (2%)
 Frame = -3

Query: 645 SRKARLEVSAREAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTL 466
           SR   L     E  T IF+   H I + + D  +  G  R    A+E+TK  E   + T 
Sbjct: 149 SRCKILNQIKEEQRTIIFFEVTHRIIESITDIINILGPKRIITFAKELTKKWEIIQKNT- 207

Query: 465 GEANEAFATRQ----PKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKL 298
              N     +Q     KGEI I+I G +       SD  L  +  +++    + + A+K+
Sbjct: 208 -SYNILIWLKQNYTYKKGEIVIIISGYNNKNTNLISDAVL--KTLKILKTHLSFNKAIKI 264

Query: 297 VAEATSAKKKDVYALAL 247
            A      K  +Y  A+
Sbjct: 265 TAGIYKLPKNYLYNYAI 281

>Y552_HELPJ (Q9ZLS8) Hypothetical UPF0011 protein jhp_0499|
          Length = 289

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = -3

Query: 612 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ 433
           E    +FY  PH + + L D  +          A+E+TKLH++++ G + +         
Sbjct: 169 EKTPVVFYESPHRLLETLRDL-NDLAQGMHLFAAKELTKLHQQYYLGEISQIMTQLQKSN 227

Query: 432 PKGEITILI 406
            +GE  +++
Sbjct: 228 IQGEWVLVL 236

>ARO80_YEAST (Q04052) Transcriptional activator ARO80|
          Length = 950

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
 Frame = -3

Query: 264 VYALALRVFGK*VKCNPFNPIKMARYIDL--ESARDLLFPSKEIARD-------VLEIYN 112
           +++LAL+V GK  + N    +  ARY++L   SA+++L  +K ++R        V  +  
Sbjct: 643 IFSLALQVDGKTSRLNMNEIVTSARYVELAYRSAKEILSSAKRVSRQGMLKYMPVRWVIR 702

Query: 111 FLSSVCTFSDCY 76
            + S+     CY
Sbjct: 703 IIRSIAFIVKCY 714

>Y6939_STRAW (Q827I5) UPF0271 protein SAV6939|
          Length = 250

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
 Frame = -3

Query: 630 LEVSAREAVTQIFYVPPHGI----------QQFLVDAASSFGDSRSCVIAREITKLHEEF 481
           LEV AR A T++ YV PHG           Q   V       D+   V+    ++L E  
Sbjct: 93  LEVFARAAGTRVSYVKPHGALYNRVVHDEGQAGAVVDGVRLADASLPVLGLPGSRLLEVA 152

Query: 480 WRGTLGEANEAFATRQPKGEITILIDGNSISIVEKP 373
            +  L    EAFA R    E T++  G   ++V  P
Sbjct: 153 EKAGLPVVTEAFADRAYTEEGTLVPRGEDGAVVTDP 188

>CDC63_HALMA (Q5V1W6) Cell division control protein 6 homolog 3 (CDC6 homolog 3)|
          Length = 403

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 381 EKPSDDFLEHELRELMAKGHALSTAVKLVA--EATSAKKKDVYALALRV 241
           EK     +EH +REL   GH    A+  +A  + T A+ +DVY L  R+
Sbjct: 281 EKLEQSQVEHGMRELTKHGHLALVAMLQLAFEQETPARIRDVYPLYRRI 329

>MCRX_METFE (Q49174) Methyl-coenzyme M reductase II alpha subunit (EC 2.8.4.1)|
           (Coenzyme-B sulfoethylthiotransferase alpha) (MCR II
           alpha)
          Length = 554

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -3

Query: 399 NSISIVEKPSDDFLEHELRELMAKGHALSTAVKL----VAEATSAKKKDVYALALRVFGK 232
           NS+SI    SD+ L HELR      +A++   +     +A+A  A + D + +       
Sbjct: 459 NSLSI---RSDEGLVHELRGPNYPNYAMNVGHQPEYAGIAQAPHAARGDAFVV------- 508

Query: 231 *VKCNPFNPIKMARYIDLESARDLLFPSKEIARDVL 124
                  NP+    + D + + D  +P KEIAR  L
Sbjct: 509 -------NPLIKVAFADNDLSFDFRWPRKEIARGAL 537

>GLUQ_VIBPA (Q87LV6) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 294

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 579 HGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEAN 454
           HG+ Q  +DA    GD+  C   R+  K H  F+ GT  + N
Sbjct: 80  HGLYQAQIDAWLDNGDAYYCQCTRKQIKEHGGFYPGTCRDKN 121

>GATB_AGRT5 (Q8UFS3) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 501

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = -3

Query: 396 SISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYALALRVFGK*VKCN 217
           SI + EK   D+ E      +A G    TA   V              AL  FGK ++  
Sbjct: 341 SILVSEKAIADYYE-----AVAAGRDAKTAANWVINDLLG--------ALNKFGKDIETT 387

Query: 216 PFNPIKMARYIDLESARDLLFPSKEIARDVLEI 118
           P +P ++   IDL  A  +   S +IA+D+ EI
Sbjct: 388 PVSPDQLGGIIDLIKAETI---SGKIAKDLFEI 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,325,049
Number of Sequences: 219361
Number of extensions: 1634998
Number of successful extensions: 5003
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4986
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)