ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17l22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184525.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.26
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
3dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
4dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
5dbj|AK119227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
6dbj|AK062253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
7dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
8gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, comp... 40 4.0
9emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, comp... 40 4.0
10gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hos... 40 4.0
11gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome... 40 4.0
12emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chrom... 40 4.0
13gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome... 40 4.0
14gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, compl... 40 4.0
15gb|AC008736.6|AC008736 Homo sapiens chromosome 19 clone CTD-2538... 40 4.0
16gb|AC115761.12| Mus musculus chromosome 7, clone RP23-62N10, com... 40 4.0
17emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 i... 40 4.0
18gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, comple... 40 4.0 
>ref|NM_184525.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1692

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 75   ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
            ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 1460 ccaaaaatggaacagacatcgttcattacactcagggttggc 1419
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                         
Query: 75      ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
               ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 3446172 ccaaaaatggaacagacatcgttcattacactcagggttggc 3446213
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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0701D05
          Length = 172161

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 75     ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
              ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 124542 ccaaaaatggaacagacatcgttcattacactcagggttggc 124583
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 75    ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
             ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 14240 ccaaaaatggaacagacatcgttcattacactcagggttggc 14281
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>dbj|AK119227.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A03, full
            insert sequence
          Length = 1692

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 75   ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
            ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 1460 ccaaaaatggaacagacatcgttcattacactcagggttggc 1419
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>dbj|AK062253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G05, full
            insert sequence
          Length = 1690

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 75   ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
            ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 1459 ccaaaaatggaacagacatcgttcattacactcagggttggc 1418
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 75    ccaaaaatggaacaaggaacgttcattacactcagggctggc 116
             ||||||||||||||   | |||||||||||||||||| ||||
Sbjct: 32932 ccaaaaatggaacagacatcgttcattacactcagggttggc 32973
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>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence
          Length = 246249

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 233   gcaccttcanaggtcggaggagc 255
             ||||||||| |||||||||||||
Sbjct: 32418 gcaccttcaaaggtcggaggagc 32396
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>emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, complete sequence
          Length = 39757

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tgaataattatgtatataat 173
             ||||||||||||||||||||
Sbjct: 12467 tgaataattatgtatataat 12486
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>gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 215638

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    cagggctggcctggcttcct 126
              ||||||||||||||||||||
Sbjct: 174492 cagggctggcctggcttcct 174511
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>gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome 16, complete sequence
          Length = 195244

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    agggctggcctggcttcctt 127
              ||||||||||||||||||||
Sbjct: 145315 agggctggcctggcttcctt 145334
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>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    atgtatataataccatgaac 182
              ||||||||||||||||||||
Sbjct: 279242 atgtatataataccatgaac 279223
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>gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome 16, complete sequence
          Length = 139767

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    agggctggcctggcttcctt 127
              ||||||||||||||||||||
Sbjct: 130200 agggctggcctggcttcctt 130181
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>gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, complete sequence
          Length = 116899

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   aactgaataattatgtatataata 174
             ||||||| ||||||||||||||||
Sbjct: 22243 aactgaagaattatgtatataata 22220
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>gb|AC008736.6|AC008736 Homo sapiens chromosome 19 clone CTD-2538C1, complete sequence
          Length = 191925

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gggtgagatccacttttaca 24
             ||||||||||||||||||||
Sbjct: 74481 gggtgagatccacttttaca 74500
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>gb|AC115761.12| Mus musculus chromosome 7, clone RP23-62N10, complete sequence
          Length = 215013

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 233  gcaccttcanaggtcggaggagc 255
            ||||||||| |||||||||||||
Sbjct: 5695 gcaccttcaaaggtcggaggagc 5717
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>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3,
              complete sequence
          Length = 158520

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    aataattatgtatataatac 175
              ||||||||||||||||||||
Sbjct: 132444 aataattatgtatataatac 132425
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>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence
          Length = 184981

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ttacaacagcaccacaggca 39
             ||||||||||||||||||||
Sbjct: 91428 ttacaacagcaccacaggca 91409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,561,689
Number of Sequences: 3902068
Number of extensions: 2561689
Number of successful extensions: 48470
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48423
Number of HSP's gapped (non-prelim): 47
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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