ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17l21 |
|---|---|
| Clone Library Name | barley_pub |
>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I| Length = 374 Score = 35.8 bits (81), Expect = 0.097 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSYFCTRETQPKPTEASP 419 T V G LK + + + HD NI+G++I + G+G+Y+Y+ R T+ EA Sbjct: 306 TLSVCGILKEIITIIASTLFYHDILLPINIVGLVITLCGIGVYNYY--RITKGNKKEAEK 363 Query: 418 QVTQVKEGES 389 +V + E+ Sbjct: 364 EVEYIVLNEN 373
>S35D1_HUMAN (Q9NTN3) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter| (UDP-GlcA/UDP-GalNAc transporter) (Solute carrier family 35 member D1) (UDP-galactose transporter-related protein 7) (UGTrel7) Length = 355 Score = 35.0 bits (79), Expect = 0.17 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDP-FSWRNILGILIAVVGMGLYSYFC-TRETQPKPTEA 425 T ++G +K L+ G V D F+W N +G+ I++ G +YSY T E K +EA Sbjct: 284 TTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSEA 343 Query: 424 S 422 + Sbjct: 344 N 344
>SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1| Length = 265 Score = 33.5 bits (75), Expect = 0.48 Identities = 13/44 (29%), Positives = 27/44 (61%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467 +Y V K +V+ ++L +P + N+LG++ A++G+ LY+ Sbjct: 146 SYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYN 189
>SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1| Length = 266 Score = 33.5 bits (75), Expect = 0.48 Identities = 13/44 (29%), Positives = 27/44 (61%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467 +Y V K +V+ ++L +P + N+LG++ A++G+ LY+ Sbjct: 146 SYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYN 189
>CB018_RAT (Q5RKH7) Protein C2orf18 homolog precursor| Length = 372 Score = 32.0 bits (71), Expect = 1.4 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS------YFCTRETQPK 437 T VL L+T ++ AF L + F ILG LI ++G LY+ C Sbjct: 291 TRMVLDTLRTVVIWAFTLALGWEVFHPLQILGFLILLMGTALYNGLHRPLLACLSRRWRH 350 Query: 436 PTEASPQVTQVKEGESDPLIADS 368 PT+ EGE + L+ DS Sbjct: 351 PTQ---------EGEQERLLGDS 364
>YJT3_YEAST (P39542) Hypothetical protein YJL193w| Length = 402 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/54 (24%), Positives = 29/54 (53%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSYFCTRETQPK 437 TY + +K ++A +V + +W + G+++ +G+ LY CT +++ K Sbjct: 344 TYSIANLMKRFAIIAVSWVFIGRRITWLQVFGLVLNTLGLFLYER-CTSQSKIK 396
>US74C_DROME (Q95YI5) UDP-sugar transporter UST74c (Protein fringe connection)| Length = 373 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHD-PFSWRNILGILIAVVGMGLYSYFCTR 452 T ++G LK V G + D FSW N +GI I+V+ LY+Y R Sbjct: 305 TTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINISVLASLLYTYVTFR 354
>MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mob1 homolog 2A)| Length = 217 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +2 Query: 179 NYVYNTMNQGPKRRSCPRALGAPHGHLQRSEEQR-SCPCILGAP 307 N +Y T++ G +SCP G P + +EQR P L AP Sbjct: 73 NLIYGTISDGCTEQSCPVMSGGPKYEYRWQDEQRFRKPTALSAP 116
>INX1_DROME (P27716) Innexin inx1 (Innexin-1) (Protein ogre) (Protein optic| ganglion reduced) Length = 362 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -2 Query: 568 CLVLAFGYVLLHDP-FSWRNILGILIAVVGMGLYSYFCTRETQPKPTEA 425 C VL F + + P F W G L+ ++ MGL CTRE + +A Sbjct: 113 CFVLFFQAMACYTPKFLWNKFEGGLMRMIVMGLNITICTREEKEAKRDA 161
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -3 Query: 318 RSPCGAPSMHGHERCSSDL*RCPCGAPSARGHERRFGPW 202 R+ CG P H H +S R P AP H R G W Sbjct: 1211 RARCGCPRPHPHRPRASH--RAPAAAPHHHRHRRAAGGW 1247
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -3 Query: 318 RSPCGAPSMHGHERCSSDL*RCPCGAPSARGHERRFGPW 202 R+ CG P H H +S R P AP H R G W Sbjct: 1211 RARCGCPRPHPHRPRASH--RAPAAAPHHHRHRRAAGGW 1247
>NPT4_HUMAN (O00476) Sodium-dependent phosphate transport protein 4| (Sodium/phosphate cotransporter 4) (Na(+)/PI cotransporter 4) (Solute carrier family 18 member 3) Length = 401 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 550 GYVLLHDP-FSWRNILGILIAVVGMGLYSYFCTRETQPKPTEASPQVTQV 404 G++L DP F WRN+ +L AV +GL Y E + ++T++ Sbjct: 352 GFLLSQDPEFGWRNVFFLLFAVNLLGLLFYLIFGEADVQEWAKERKLTRL 401
>CB018_PONPY (Q5RFT1) Protein C2orf18 homolog precursor| Length = 371 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467 T VL L+T ++ A L + F ILG LI ++G LY+ Sbjct: 291 TRMVLDSLRTVVIWALSLALGWEAFHALQILGFLILLIGTALYN 334
>CB018_HUMAN (Q8N357) Protein C2orf18 precursor| Length = 371 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467 T VL L+T ++ A L + F ILG LI ++G LY+ Sbjct: 291 TRMVLDSLRTVVIWALSLALGWEAFHALQILGFLILLIGTALYN 334
>RHAT_ERWCT (Q6DA13) L-rhamnose-proton symporter (L-rhamnose-H(+) transport| protein) Length = 344 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -2 Query: 589 VLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSY 464 ++G L T ++ VL P +LG+L+AV+G+ + SY Sbjct: 112 IIGTLMTPVLQGKFSVLFGSPGGQMTLLGVLVAVIGVAIVSY 153
>CB018_MOUSE (Q8VE96) Protein C2orf18 homolog precursor| Length = 372 Score = 29.3 bits (64), Expect = 9.1 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Frame = -2 Query: 598 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS-------YFCTRETQP 440 T VL L+T ++ AF L + F ILG LI ++G LY+ F +R + Sbjct: 291 TRMVLDTLRTIVIWAFTLALGWEIFYPLQILGFLILLMGTALYNGLHRPLLAFLSRRWR- 349 Query: 439 KPTEASPQVTQVKEGESDPLIADS 368 PT+ EGE + L+ DS Sbjct: 350 LPTQ---------EGEQERLLGDS 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,613,676 Number of Sequences: 219361 Number of extensions: 1560984 Number of successful extensions: 4010 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4006 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
