| Clone Name | rbags17l21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184525.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1692 Score = 170 bits (86), Expect = 3e-39 Identities = 251/306 (82%) Strand = Plus / Minus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcggtggctgcagcggctccgttc 353 ||||||||||||||||| || |||||||||| ||||||| | |||| | | || || Sbjct: 1324 tacttggagctccacataggtaccttcagagcctcgtcgtcgcctgcgttgcccccattt 1265 Query: 354 tcggcggcgttcaaggagtccgcgatcaaagggtctgattcgccttccttcacctgggtg 413 || || | | |||| ||||||| |||||| ||||| ||||||| ||| || |||||| || Sbjct: 1264 tcagcagtgctcaaagagtccgagatcaaggggtccgattcgctttcttttacctggttg 1205 Query: 414 acttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaagtaggaatat 473 | |||||| ||||||||||| |||||||| ||| || ||||||||||| || || Sbjct: 1204 agttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaagtatgagtac 1145 Query: 474 agtcccatcccaaccactgcaatcaggattccaagtatgtttctccagctaaacgggtcg 533 | ||||||||| ||| ||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 1144 gataccatcccaatcacagcaatgaggattccaagtatatttctccagctaaatggatcg 1085 Query: 534 tgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggccaaggacttga 593 |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 1084 tgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggccaagcacttgg 1025 Query: 594 taagtt 599 |||||| Sbjct: 1024 taagtt 1019 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Minus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 1441 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 1387 Query: 171 aactgaa 177 | ||||| Sbjct: 1386 agctgaa 1380 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 236 cttggagctccacatgggcaccttcagag 264 ||||||||||||||| || |||||||||| Sbjct: 1322 cttggagctccacataggtaccttcagag 1294
>dbj|AK119227.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A03, full insert sequence Length = 1692 Score = 170 bits (86), Expect = 3e-39 Identities = 251/306 (82%) Strand = Plus / Minus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcggtggctgcagcggctccgttc 353 ||||||||||||||||| || |||||||||| ||||||| | |||| | | || || Sbjct: 1324 tacttggagctccacataggtaccttcagagcctcgtcgtcgcctgcgttgcccccattt 1265 Query: 354 tcggcggcgttcaaggagtccgcgatcaaagggtctgattcgccttccttcacctgggtg 413 || || | | |||| ||||||| |||||| ||||| ||||||| ||| || |||||| || Sbjct: 1264 tcagcagtgctcaaagagtccgagatcaaggggtccgattcgctttcttttacctggttg 1205 Query: 414 acttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaagtaggaatat 473 | |||||| ||||||||||| |||||||| ||| || ||||||||||| || || Sbjct: 1204 agttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaagtatgagtac 1145 Query: 474 agtcccatcccaaccactgcaatcaggattccaagtatgtttctccagctaaacgggtcg 533 | ||||||||| ||| ||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 1144 gataccatcccaatcacagcaatgaggattccaagtatatttctccagctaaatggatcg 1085 Query: 534 tgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggccaaggacttga 593 |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 1084 tgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggccaagcacttgg 1025 Query: 594 taagtt 599 |||||| Sbjct: 1024 taagtt 1019 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Minus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 1441 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 1387 Query: 171 aactgaa 177 | ||||| Sbjct: 1386 agctgaa 1380 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 236 cttggagctccacatgggcaccttcagag 264 ||||||||||||||| || |||||||||| Sbjct: 1322 cttggagctccacataggtaccttcagag 1294
>dbj|AK062253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G05, full insert sequence Length = 1690 Score = 167 bits (84), Expect = 5e-38 Identities = 198/236 (83%) Strand = Plus / Minus Query: 364 tcaaggagtccgcgatcaaagggtctgattcgccttccttcacctgggtgacttgtggag 423 |||| ||||||| |||||| ||||| ||||||| ||| || |||||| ||| |||||| | Sbjct: 1254 tcaaagagtccgagatcaaggggtccgattcgctttcttttacctggttgagttgtgggg 1195 Query: 424 aggcttcagttggttttggctgagtttcacgggtgcagaagtaggaatatagtcccatcc 483 |||||||||| |||||||| ||| || ||||||||||| || || | |||||| Sbjct: 1194 aggcttcagtgggttttggtggagcctcttttgtgcagaagtatgagtacgataccatcc 1135 Query: 484 caaccactgcaatcaggattccaagtatgtttctccagctaaacgggtcgtgaagcaaga 543 ||| ||| ||||| |||||||||||||| |||||||||||||| || ||||||||||| | Sbjct: 1134 caatcacagcaatgaggattccaagtatatttctccagctaaatggatcgtgaagcaaaa 1075 Query: 544 catagccgaaggcaagaaccaaacatgtctttagatggccaaggacttgataagtt 599 |||| || |||||||||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1074 cataaccaaaggcaagaaccaagcatgtcttgagatggccaagcacttggtaagtt 1019 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Minus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 1440 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 1386 Query: 171 aactgaa 177 | ||||| Sbjct: 1385 agctgaa 1379 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 294 tacttggagctccacatggggaccttca 321 ||||||||||||||||| || ||||||| Sbjct: 1323 tacttggagctccacataggtaccttca 1296
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 141 bits (71), Expect = 3e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 405 acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464 |||||| ||| |||||| ||||||||||| |||||||| ||| || ||||||||| Sbjct: 3446542 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 3446601 Query: 465 taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524 || || || | ||||||||| ||| ||||| |||||||||||||| |||||||||||| Sbjct: 3446602 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 3446661 Query: 525 aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584 || || ||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| Sbjct: 3446662 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 3446721 Query: 585 aggacttgataagtt 599 || ||||| |||||| Sbjct: 3446722 agcacttggtaagtt 3446736 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332 ||||||||||||||||| || |||||||||| ||||||| Sbjct: 3446308 tacttggagctccacataggtaccttcagagcctcgtcg 3446346 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 236 cttggagctccacatgggcaccttcagag 264 ||||||||||||||| || |||||||||| Sbjct: 3446310 cttggagctccacataggtaccttcagag 3446338 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Plus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 3446191 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 3446245 Query: 171 aactgaa 177 | ||||| Sbjct: 3446246 agctgaa 3446252
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 141 bits (71), Expect = 3e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 405 acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464 |||||| ||| |||||| ||||||||||| |||||||| ||| || ||||||||| Sbjct: 124912 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 124971 Query: 465 taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524 || || || | ||||||||| ||| ||||| |||||||||||||| |||||||||||| Sbjct: 124972 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 125031 Query: 525 aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584 || || ||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| Sbjct: 125032 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 125091 Query: 585 aggacttgataagtt 599 || ||||| |||||| Sbjct: 125092 agcacttggtaagtt 125106 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332 ||||||||||||||||| || |||||||||| ||||||| Sbjct: 124678 tacttggagctccacataggtaccttcagagcctcgtcg 124716 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 236 cttggagctccacatgggcaccttcagag 264 ||||||||||||||| || |||||||||| Sbjct: 124680 cttggagctccacataggtaccttcagag 124708 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Plus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 124561 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 124615 Query: 171 aactgaa 177 | ||||| Sbjct: 124616 agctgaa 124622
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 141 bits (71), Expect = 3e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 405 acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464 |||||| ||| |||||| ||||||||||| |||||||| ||| || ||||||||| Sbjct: 14610 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 14669 Query: 465 taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524 || || || | ||||||||| ||| ||||| |||||||||||||| |||||||||||| Sbjct: 14670 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 14729 Query: 525 aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584 || || ||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| Sbjct: 14730 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 14789 Query: 585 aggacttgataagtt 599 || ||||| |||||| Sbjct: 14790 agcacttggtaagtt 14804 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332 ||||||||||||||||| || |||||||||| ||||||| Sbjct: 14376 tacttggagctccacataggtaccttcagagcctcgtcg 14414 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 236 cttggagctccacatgggcaccttcagag 264 ||||||||||||||| || |||||||||| Sbjct: 14378 cttggagctccacataggtaccttcagag 14406 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Plus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 14259 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 14313 Query: 171 aactgaa 177 | ||||| Sbjct: 14314 agctgaa 14320
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 141 bits (71), Expect = 3e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 405 acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464 |||||| ||| |||||| ||||||||||| |||||||| ||| || ||||||||| Sbjct: 33302 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 33361 Query: 465 taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524 || || || | ||||||||| ||| ||||| |||||||||||||| |||||||||||| Sbjct: 33362 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 33421 Query: 525 aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584 || || ||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| Sbjct: 33422 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 33481 Query: 585 aggacttgataagtt 599 || ||||| |||||| Sbjct: 33482 agcacttggtaagtt 33496 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332 ||||||||||||||||| || |||||||||| ||||||| Sbjct: 33068 tacttggagctccacataggtaccttcagagcctcgtcg 33106 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 236 cttggagctccacatgggcaccttcagag 264 ||||||||||||||| || |||||||||| Sbjct: 33070 cttggagctccacataggtaccttcagag 33098 Score = 42.1 bits (21), Expect = 2.1 Identities = 56/67 (83%), Gaps = 8/67 (11%) Strand = Plus / Plus Query: 114 cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170 |||||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 32951 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 33005 Query: 171 aactgaa 177 | ||||| Sbjct: 33006 agctgaa 33012
>gb|BT016349.1| Zea mays clone Contig182 mRNA sequence Length = 1271 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || || || ||||||| | ||| || ||||||||||||||||||||| Sbjct: 757 gtgcagaagtacgagtacagaaccatcccgatcaccgcgatcaggattccaagtatgttt 698 Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaa 565 |||||||||||||||||||| |||| ||| ||||||||||| || ||||| Sbjct: 697 ctccagctaaacgggtcgtggagcaggacgtagccgaaggcgaggaccaa 648 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332 ||||| ||||||||||| || |||||||||||||||||| Sbjct: 919 tacttcgagctccacattggcaccttcagaggctcgtcg 881 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 gagctccacatgggcaccttcagagg 265 ||||||||||| |||||||||||||| Sbjct: 913 gagctccacattggcaccttcagagg 888
>gb|AY108612.1| Zea mays PCO138723 mRNA sequence Length = 1272 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || || || ||||||| | ||| || ||||||||||||||||||||| Sbjct: 747 gtgcagaagtacgagtacaggaccatcccgatcaccgcgatcaggattccaagtatgttt 688 Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaa 565 |||||||||||||||||||| |||| ||| ||||||||||| || ||||| Sbjct: 687 ctccagctaaacgggtcgtggagcaggacgtagccgaaggcgaggaccaa 638 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332 ||||| ||||||||||| || |||||||||||||||||| Sbjct: 912 tacttcgagctccacattggcaccttcagaggctcgtcg 874 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 gagctccacatgggcaccttcagagg 265 ||||||||||| |||||||||||||| Sbjct: 906 gagctccacattggcaccttcagagg 881
>gb|AY111469.1| Zea mays CL6403_1 mRNA sequence Length = 701 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| ||||||| |||| ||||| || ||||| |||||||||||||||||| Sbjct: 464 gtgcagaagtatgaatataagaccattccaactacagcaattaggattccaagtatgttt 523 Query: 516 ctccagctaaacgggtcgtgaag 538 |||||||||||||| |||||||| Sbjct: 524 ctccagctaaacggatcgtgaag 546 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 294 tacttggagctccacatggggaccttcagaggctcgtc 331 ||||| |||||||||||||| ||||||| ||||||||| Sbjct: 308 tactttgagctccacatgggtaccttcaaaggctcgtc 345 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 cttccagccctactatctgcctactaaactgaat 178 |||||| ||||||||||||||| ||||| ||||| Sbjct: 231 cttccaaccctactatctgcctgctaaattgaat 264 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 226 cccgcgagcgcttggagctccacatgggcaccttca 261 |||||||| ||| |||||||||||||| ||||||| Sbjct: 300 cccgcgagtactttgagctccacatgggtaccttca 335
>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02, complete sequence Length = 150474 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || |||| |||| ||||| |||||||| ||||| || ||||||||| Sbjct: 135990 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 136049 Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575 ||||||||||| ||||| |||||||| ||||| || |||| || || | ||||| || Sbjct: 136050 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 136109 Query: 576 agatggccaaggacttgataagt 598 |||||||| |||||||| ||||| Sbjct: 136110 agatggcccaggacttggtaagt 136132
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || |||| |||| ||||| |||||||| ||||| || ||||||||| Sbjct: 34157 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 34216 Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575 ||||||||||| ||||| |||||||| ||||| || |||| || || | ||||| || Sbjct: 34217 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 34276 Query: 576 agatggccaaggacttgataagt 598 |||||||| |||||||| ||||| Sbjct: 34277 agatggcccaggacttggtaagt 34299
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || |||| |||| ||||| |||||||| ||||| || ||||||||| Sbjct: 4059463 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 4059522 Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575 ||||||||||| ||||| |||||||| ||||| || |||| || || | ||||| || Sbjct: 4059523 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 4059582 Query: 576 agatggccaaggacttgataagt 598 |||||||| |||||||| ||||| Sbjct: 4059583 agatggcccaggacttggtaagt 4059605 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 agttggttttggctgagttt 450 |||||||||||||||||||| Sbjct: 22833090 agttggttttggctgagttt 22833109
>dbj|AK065618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028M22, full insert sequence Length = 1713 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || |||| |||| ||||| |||||||| ||||| || ||||||||| Sbjct: 1115 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 1056 Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575 ||||||||||| ||||| |||||||| ||||| || |||| || || | ||||| || Sbjct: 1055 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 996 Query: 576 agatggccaaggacttgataagt 598 |||||||| |||||||| ||||| Sbjct: 995 agatggcccaggacttggtaagt 973
>dbj|AB060277.1| Oryza sativa GPT mRNA for putative glucose-6-phosphate/phosphate-tranlocator, complete cds Length = 1065 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515 ||||||||||| || |||| |||| ||||| |||||||| ||||| || ||||||||| Sbjct: 896 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 837 Query: 516 ctccagctaaacgggtcgtgaagcaagacata 547 |||||||||| ||||| |||||||| ||||| Sbjct: 836 ctccagctaagtgggtcatgaagcaaaacata 805
>gb|AC133090.4| Mus musculus BAC clone RP24-194H23 from chromosome 15, complete sequence Length = 148555 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 tcacctgggtgacttgtggaga 424 |||||||||||||||||||||| Sbjct: 72677 tcacctgggtgacttgtggaga 72698
>gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, complete sequence Length = 216451 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ccactgcaatcaggattccaa 507 ||||||||||||||||||||| Sbjct: 211124 ccactgcaatcaggattccaa 211104
>gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_C01, complete sequence Length = 114236 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 agttggttttggctgagttt 450 |||||||||||||||||||| Sbjct: 31794 agttggttttggctgagttt 31813
>emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, complete sequence Length = 39757 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 tgaataattatgtatataat 193 |||||||||||||||||||| Sbjct: 12467 tgaataattatgtatataat 12486
>gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hospital Oakland Research Institute) complete sequence Length = 215638 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cagggctggcctggcttcct 146 |||||||||||||||||||| Sbjct: 174492 cagggctggcctggcttcct 174511
>gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome 16, complete sequence Length = 195244 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 agggctggcctggcttcctt 147 |||||||||||||||||||| Sbjct: 145315 agggctggcctggcttcctt 145334
>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4 Length = 343050 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 atgtatataataccatgaac 202 |||||||||||||||||||| Sbjct: 279242 atgtatataataccatgaac 279223
>gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome 16, complete sequence Length = 139767 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 agggctggcctggcttcctt 147 |||||||||||||||||||| Sbjct: 130200 agggctggcctggcttcctt 130181
>gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, complete sequence Length = 116899 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 aactgaataattatgtatataata 194 ||||||| |||||||||||||||| Sbjct: 22243 aactgaagaattatgtatataata 22220
>emb|AJ330651.1|HSA330651 Homo sapiens genomic sequence surrounding NotI site, clone HSJ4P-I15RS Length = 740 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cgtcggtggctgcagcggct 347 |||||||||||||||||||| Sbjct: 17 cgtcggtggctgcagcggct 36
>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3, complete sequence Length = 158520 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aataattatgtatataatac 195 |||||||||||||||||||| Sbjct: 132444 aataattatgtatataatac 132425
>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence Length = 184981 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttacaacagcaccacaggca 59 |||||||||||||||||||| Sbjct: 91428 ttacaacagcaccacaggca 91409 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,162,379 Number of Sequences: 3902068 Number of extensions: 4162379 Number of successful extensions: 80226 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80059 Number of HSP's gapped (non-prelim): 157 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)