ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184525.2| Oryza sativa (japonica cultivar-group), mRNA 170 3e-39
2dbj|AK119227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
3dbj|AK062253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 5e-38
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
5dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
6dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
7dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
8gb|BT016349.1| Zea mays clone Contig182 mRNA sequence 107 4e-20
9gb|AY108612.1| Zea mays PCO138723 mRNA sequence 107 4e-20
10gb|AY111469.1| Zea mays CL6403_1 mRNA sequence 94 6e-16
11gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
12gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
14dbj|AK065618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
15dbj|AB060277.1| Oryza sativa GPT mRNA for putative glucose-6-pho... 72 2e-09
16gb|AC133090.4| Mus musculus BAC clone RP24-194H23 from chromosom... 44 0.52
17gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, comple... 42 2.1
18gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
19emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, comp... 40 8.2
20gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hos... 40 8.2
21gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome... 40 8.2
22emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chrom... 40 8.2
23gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome... 40 8.2
24gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, compl... 40 8.2
25emb|AJ330651.1|HSA330651 Homo sapiens genomic sequence surroundi... 40 8.2
26emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 i... 40 8.2
27gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, comple... 40 8.2

>ref|NM_184525.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1692

 Score =  170 bits (86), Expect = 3e-39
 Identities = 251/306 (82%)
 Strand = Plus / Minus

                                                                        
Query: 294  tacttggagctccacatggggaccttcagaggctcgtcggtggctgcagcggctccgttc 353
            ||||||||||||||||| || |||||||||| |||||||  | ||||   | | || || 
Sbjct: 1324 tacttggagctccacataggtaccttcagagcctcgtcgtcgcctgcgttgcccccattt 1265

                                                                        
Query: 354  tcggcggcgttcaaggagtccgcgatcaaagggtctgattcgccttccttcacctgggtg 413
            || || | | |||| ||||||| |||||| ||||| ||||||| ||| || |||||| ||
Sbjct: 1264 tcagcagtgctcaaagagtccgagatcaaggggtccgattcgctttcttttacctggttg 1205

                                                                        
Query: 414  acttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaagtaggaatat 473
            | |||||| ||||||||||| ||||||||  |||  ||    ||||||||||| || || 
Sbjct: 1204 agttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaagtatgagtac 1145

                                                                        
Query: 474  agtcccatcccaaccactgcaatcaggattccaagtatgtttctccagctaaacgggtcg 533
              | ||||||||| ||| ||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 1144 gataccatcccaatcacagcaatgaggattccaagtatatttctccagctaaatggatcg 1085

                                                                        
Query: 534  tgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggccaaggacttga 593
            |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| ||||| 
Sbjct: 1084 tgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggccaagcacttgg 1025

                  
Query: 594  taagtt 599
            ||||||
Sbjct: 1024 taagtt 1019



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Minus

                                                                        
Query: 114  cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
            ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 1441 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 1387

                   
Query: 171  aactgaa 177
            | |||||
Sbjct: 1386 agctgaa 1380



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 236  cttggagctccacatgggcaccttcagag 264
            ||||||||||||||| || ||||||||||
Sbjct: 1322 cttggagctccacataggtaccttcagag 1294



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>dbj|AK119227.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A03, full
            insert sequence
          Length = 1692

 Score =  170 bits (86), Expect = 3e-39
 Identities = 251/306 (82%)
 Strand = Plus / Minus

                                                                        
Query: 294  tacttggagctccacatggggaccttcagaggctcgtcggtggctgcagcggctccgttc 353
            ||||||||||||||||| || |||||||||| |||||||  | ||||   | | || || 
Sbjct: 1324 tacttggagctccacataggtaccttcagagcctcgtcgtcgcctgcgttgcccccattt 1265

                                                                        
Query: 354  tcggcggcgttcaaggagtccgcgatcaaagggtctgattcgccttccttcacctgggtg 413
            || || | | |||| ||||||| |||||| ||||| ||||||| ||| || |||||| ||
Sbjct: 1264 tcagcagtgctcaaagagtccgagatcaaggggtccgattcgctttcttttacctggttg 1205

                                                                        
Query: 414  acttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaagtaggaatat 473
            | |||||| ||||||||||| ||||||||  |||  ||    ||||||||||| || || 
Sbjct: 1204 agttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaagtatgagtac 1145

                                                                        
Query: 474  agtcccatcccaaccactgcaatcaggattccaagtatgtttctccagctaaacgggtcg 533
              | ||||||||| ||| ||||| |||||||||||||| |||||||||||||| || |||
Sbjct: 1144 gataccatcccaatcacagcaatgaggattccaagtatatttctccagctaaatggatcg 1085

                                                                        
Query: 534  tgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggccaaggacttga 593
            |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| ||||| 
Sbjct: 1084 tgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggccaagcacttgg 1025

                  
Query: 594  taagtt 599
            ||||||
Sbjct: 1024 taagtt 1019



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Minus

                                                                        
Query: 114  cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
            ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 1441 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 1387

                   
Query: 171  aactgaa 177
            | |||||
Sbjct: 1386 agctgaa 1380



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 236  cttggagctccacatgggcaccttcagag 264
            ||||||||||||||| || ||||||||||
Sbjct: 1322 cttggagctccacataggtaccttcagag 1294



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>dbj|AK062253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G05, full
            insert sequence
          Length = 1690

 Score =  167 bits (84), Expect = 5e-38
 Identities = 198/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  tcaaggagtccgcgatcaaagggtctgattcgccttccttcacctgggtgacttgtggag 423
            |||| ||||||| |||||| ||||| ||||||| ||| || |||||| ||| |||||| |
Sbjct: 1254 tcaaagagtccgagatcaaggggtccgattcgctttcttttacctggttgagttgtgggg 1195

                                                                        
Query: 424  aggcttcagttggttttggctgagtttcacgggtgcagaagtaggaatatagtcccatcc 483
            |||||||||| ||||||||  |||  ||    ||||||||||| || ||   | ||||||
Sbjct: 1194 aggcttcagtgggttttggtggagcctcttttgtgcagaagtatgagtacgataccatcc 1135

                                                                        
Query: 484  caaccactgcaatcaggattccaagtatgtttctccagctaaacgggtcgtgaagcaaga 543
            ||| ||| ||||| |||||||||||||| |||||||||||||| || ||||||||||| |
Sbjct: 1134 caatcacagcaatgaggattccaagtatatttctccagctaaatggatcgtgaagcaaaa 1075

                                                                    
Query: 544  catagccgaaggcaagaaccaaacatgtctttagatggccaaggacttgataagtt 599
            |||| || |||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct: 1074 cataaccaaaggcaagaaccaagcatgtcttgagatggccaagcacttggtaagtt 1019



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Minus

                                                                        
Query: 114  cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
            ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 1440 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 1386

                   
Query: 171  aactgaa 177
            | |||||
Sbjct: 1385 agctgaa 1379



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 294  tacttggagctccacatggggaccttca 321
            ||||||||||||||||| || |||||||
Sbjct: 1323 tacttggagctccacataggtaccttca 1296



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  141 bits (71), Expect = 3e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                           
Query: 405     acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464
               |||||| ||| |||||| ||||||||||| ||||||||  |||  ||    |||||||||
Sbjct: 3446542 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 3446601

                                                                           
Query: 465     taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524
               || || ||   | ||||||||| ||| ||||| |||||||||||||| ||||||||||||
Sbjct: 3446602 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 3446661

                                                                           
Query: 525     aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584
               || || ||||||||||| ||||| || |||||||||||||| |||||||| |||||||||
Sbjct: 3446662 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 3446721

                              
Query: 585     aggacttgataagtt 599
               || ||||| ||||||
Sbjct: 3446722 agcacttggtaagtt 3446736



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 294     tacttggagctccacatggggaccttcagaggctcgtcg 332
               ||||||||||||||||| || |||||||||| |||||||
Sbjct: 3446308 tacttggagctccacataggtaccttcagagcctcgtcg 3446346



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 236     cttggagctccacatgggcaccttcagag 264
               ||||||||||||||| || ||||||||||
Sbjct: 3446310 cttggagctccacataggtaccttcagag 3446338



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Plus

                                                                           
Query: 114     cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
               ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 3446191 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 3446245

                      
Query: 171     aactgaa 177
               | |||||
Sbjct: 3446246 agctgaa 3446252



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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0701D05
          Length = 172161

 Score =  141 bits (71), Expect = 3e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                          
Query: 405    acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464
              |||||| ||| |||||| ||||||||||| ||||||||  |||  ||    |||||||||
Sbjct: 124912 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 124971

                                                                          
Query: 465    taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524
              || || ||   | ||||||||| ||| ||||| |||||||||||||| ||||||||||||
Sbjct: 124972 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 125031

                                                                          
Query: 525    aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584
              || || ||||||||||| ||||| || |||||||||||||| |||||||| |||||||||
Sbjct: 125032 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 125091

                             
Query: 585    aggacttgataagtt 599
              || ||||| ||||||
Sbjct: 125092 agcacttggtaagtt 125106



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 294    tacttggagctccacatggggaccttcagaggctcgtcg 332
              ||||||||||||||||| || |||||||||| |||||||
Sbjct: 124678 tacttggagctccacataggtaccttcagagcctcgtcg 124716



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 236    cttggagctccacatgggcaccttcagag 264
              ||||||||||||||| || ||||||||||
Sbjct: 124680 cttggagctccacataggtaccttcagag 124708



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Plus

                                                                          
Query: 114    cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
              ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 124561 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 124615

                     
Query: 171    aactgaa 177
              | |||||
Sbjct: 124616 agctgaa 124622



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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score =  141 bits (71), Expect = 3e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                         
Query: 405   acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464
             |||||| ||| |||||| ||||||||||| ||||||||  |||  ||    |||||||||
Sbjct: 14610 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 14669

                                                                         
Query: 465   taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524
             || || ||   | ||||||||| ||| ||||| |||||||||||||| ||||||||||||
Sbjct: 14670 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 14729

                                                                         
Query: 525   aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584
             || || ||||||||||| ||||| || |||||||||||||| |||||||| |||||||||
Sbjct: 14730 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 14789

                            
Query: 585   aggacttgataagtt 599
             || ||||| ||||||
Sbjct: 14790 agcacttggtaagtt 14804



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 294   tacttggagctccacatggggaccttcagaggctcgtcg 332
             ||||||||||||||||| || |||||||||| |||||||
Sbjct: 14376 tacttggagctccacataggtaccttcagagcctcgtcg 14414



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 236   cttggagctccacatgggcaccttcagag 264
             ||||||||||||||| || ||||||||||
Sbjct: 14378 cttggagctccacataggtaccttcagag 14406



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Plus

                                                                         
Query: 114   cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
             ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 14259 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 14313

                    
Query: 171   aactgaa 177
             | |||||
Sbjct: 14314 agctgaa 14320



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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score =  141 bits (71), Expect = 3e-30
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                         
Query: 405   acctgggtgacttgtggagaggcttcagttggttttggctgagtttcacgggtgcagaag 464
             |||||| ||| |||||| ||||||||||| ||||||||  |||  ||    |||||||||
Sbjct: 33302 acctggttgagttgtggggaggcttcagtgggttttggtggagcctcttttgtgcagaag 33361

                                                                         
Query: 465   taggaatatagtcccatcccaaccactgcaatcaggattccaagtatgtttctccagcta 524
             || || ||   | ||||||||| ||| ||||| |||||||||||||| ||||||||||||
Sbjct: 33362 tatgagtacgataccatcccaatcacagcaatgaggattccaagtatatttctccagcta 33421

                                                                         
Query: 525   aacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtctttagatggcca 584
             || || ||||||||||| ||||| || |||||||||||||| |||||||| |||||||||
Sbjct: 33422 aatggatcgtgaagcaaaacataaccaaaggcaagaaccaagcatgtcttgagatggcca 33481

                            
Query: 585   aggacttgataagtt 599
             || ||||| ||||||
Sbjct: 33482 agcacttggtaagtt 33496



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 294   tacttggagctccacatggggaccttcagaggctcgtcg 332
             ||||||||||||||||| || |||||||||| |||||||
Sbjct: 33068 tacttggagctccacataggtaccttcagagcctcgtcg 33106



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 236   cttggagctccacatgggcaccttcagag 264
             ||||||||||||||| || ||||||||||
Sbjct: 33070 cttggagctccacataggtaccttcagag 33098



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 56/67 (83%), Gaps = 8/67 (11%)
 Strand = Plus / Plus

                                                                         
Query: 114   cgttcattacactcagggctggcctggcttccttccagccc---tactatctgcctacta 170
             ||||||||||||||||||      ||||||||||||| |||   ||||||||||||||||
Sbjct: 32951 cgttcattacactcaggg-----ttggcttccttccaaccctagtactatctgcctacta 33005

                    
Query: 171   aactgaa 177
             | |||||
Sbjct: 33006 agctgaa 33012



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>gb|BT016349.1| Zea mays clone Contig182 mRNA sequence
          Length = 1271

 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                       
Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
           ||||||||||| || || ||  ||||||| | ||| || |||||||||||||||||||||
Sbjct: 757 gtgcagaagtacgagtacagaaccatcccgatcaccgcgatcaggattccaagtatgttt 698

                                                             
Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaa 565
           |||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 697 ctccagctaaacgggtcgtggagcaggacgtagccgaaggcgaggaccaa 648



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332
           ||||| ||||||||||| || ||||||||||||||||||
Sbjct: 919 tacttcgagctccacattggcaccttcagaggctcgtcg 881



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 240 gagctccacatgggcaccttcagagg 265
           ||||||||||| ||||||||||||||
Sbjct: 913 gagctccacattggcaccttcagagg 888



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>gb|AY108612.1| Zea mays PCO138723 mRNA sequence
          Length = 1272

 Score =  107 bits (54), Expect = 4e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                       
Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
           ||||||||||| || || ||  ||||||| | ||| || |||||||||||||||||||||
Sbjct: 747 gtgcagaagtacgagtacaggaccatcccgatcaccgcgatcaggattccaagtatgttt 688

                                                             
Query: 516 ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaa 565
           |||||||||||||||||||| |||| ||| ||||||||||| || |||||
Sbjct: 687 ctccagctaaacgggtcgtggagcaggacgtagccgaaggcgaggaccaa 638



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 294 tacttggagctccacatggggaccttcagaggctcgtcg 332
           ||||| ||||||||||| || ||||||||||||||||||
Sbjct: 912 tacttcgagctccacattggcaccttcagaggctcgtcg 874



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 240 gagctccacatgggcaccttcagagg 265
           ||||||||||| ||||||||||||||
Sbjct: 906 gagctccacattggcaccttcagagg 881



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>gb|AY111469.1| Zea mays CL6403_1 mRNA sequence
          Length = 701

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
           ||||||||||| |||||||   |||| ||||| || ||||| ||||||||||||||||||
Sbjct: 464 gtgcagaagtatgaatataagaccattccaactacagcaattaggattccaagtatgttt 523

                                  
Query: 516 ctccagctaaacgggtcgtgaag 538
           |||||||||||||| ||||||||
Sbjct: 524 ctccagctaaacggatcgtgaag 546



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 294 tacttggagctccacatggggaccttcagaggctcgtc 331
           ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 308 tactttgagctccacatgggtaccttcaaaggctcgtc 345



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 145 cttccagccctactatctgcctactaaactgaat 178
           |||||| ||||||||||||||| ||||| |||||
Sbjct: 231 cttccaaccctactatctgcctgctaaattgaat 264



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 226 cccgcgagcgcttggagctccacatgggcaccttca 261
           ||||||||  ||| |||||||||||||| |||||||
Sbjct: 300 cccgcgagtactttgagctccacatgggtaccttca 335



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>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02,
              complete sequence
          Length = 150474

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Plus

                                                                          
Query: 456    gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
              ||||||||||| || ||||   |||| ||||| |||||||| ||||| || |||||||||
Sbjct: 135990 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 136049

                                                                          
Query: 516    ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575
              ||||||||||| ||||| |||||||| ||||| || ||||  || || |  ||||| || 
Sbjct: 136050 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 136109

                                     
Query: 576    agatggccaaggacttgataagt 598
              |||||||| |||||||| |||||
Sbjct: 136110 agatggcccaggacttggtaagt 136132



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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
             complete sequence
          Length = 136713

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Plus

                                                                         
Query: 456   gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
             ||||||||||| || ||||   |||| ||||| |||||||| ||||| || |||||||||
Sbjct: 34157 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 34216

                                                                         
Query: 516   ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575
             ||||||||||| ||||| |||||||| ||||| || ||||  || || |  ||||| || 
Sbjct: 34217 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 34276

                                    
Query: 576   agatggccaaggacttgataagt 598
             |||||||| |||||||| |||||
Sbjct: 34277 agatggcccaggacttggtaagt 34299



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Plus

                                                                           
Query: 456     gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
               ||||||||||| || ||||   |||| ||||| |||||||| ||||| || |||||||||
Sbjct: 4059463 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 4059522

                                                                           
Query: 516     ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575
               ||||||||||| ||||| |||||||| ||||| || ||||  || || |  ||||| || 
Sbjct: 4059523 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 4059582

                                      
Query: 576     agatggccaaggacttgataagt 598
               |||||||| |||||||| |||||
Sbjct: 4059583 agatggcccaggacttggtaagt 4059605



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 431      agttggttttggctgagttt 450
                ||||||||||||||||||||
Sbjct: 22833090 agttggttttggctgagttt 22833109



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>dbj|AK065618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028M22, full
            insert sequence
          Length = 1713

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Minus

                                                                        
Query: 456  gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
            ||||||||||| || ||||   |||| ||||| |||||||| ||||| || |||||||||
Sbjct: 1115 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 1056

                                                                        
Query: 516  ctccagctaaacgggtcgtgaagcaagacatagccgaaggcaagaaccaaacatgtcttt 575
            ||||||||||| ||||| |||||||| ||||| || ||||  || || |  ||||| || 
Sbjct: 1055 ctccagctaaatgggtcatgaagcaaaacataaccaaaggtcagtactaggcatgtttta 996

                                   
Query: 576  agatggccaaggacttgataagt 598
            |||||||| |||||||| |||||
Sbjct: 995  agatggcccaggacttggtaagt 973



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>dbj|AB060277.1| Oryza sativa GPT mRNA for putative
           glucose-6-phosphate/phosphate-tranlocator, complete cds
          Length = 1065

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 456 gtgcagaagtaggaatatagtcccatcccaaccactgcaatcaggattccaagtatgttt 515
           ||||||||||| || ||||   |||| ||||| |||||||| ||||| || |||||||||
Sbjct: 896 gtgcagaagtatgagtataagaccattccaactactgcaattaggatgccgagtatgttt 837

                                           
Query: 516 ctccagctaaacgggtcgtgaagcaagacata 547
           ||||||||||  ||||| |||||||| |||||
Sbjct: 836 ctccagctaagtgggtcatgaagcaaaacata 805



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>gb|AC133090.4| Mus musculus BAC clone RP24-194H23 from chromosome 15, complete
             sequence
          Length = 148555

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 403   tcacctgggtgacttgtggaga 424
             ||||||||||||||||||||||
Sbjct: 72677 tcacctgggtgacttgtggaga 72698



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>gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, complete sequence
          Length = 216451

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 487    ccactgcaatcaggattccaa 507
              |||||||||||||||||||||
Sbjct: 211124 ccactgcaatcaggattccaa 211104



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>gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_C01,
             complete sequence
          Length = 114236

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   agttggttttggctgagttt 450
             ||||||||||||||||||||
Sbjct: 31794 agttggttttggctgagttt 31813



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>emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, complete sequence
          Length = 39757

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   tgaataattatgtatataat 193
             ||||||||||||||||||||
Sbjct: 12467 tgaataattatgtatataat 12486



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>gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 215638

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cagggctggcctggcttcct 146
              ||||||||||||||||||||
Sbjct: 174492 cagggctggcctggcttcct 174511



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>gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome 16, complete sequence
          Length = 195244

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    agggctggcctggcttcctt 147
              ||||||||||||||||||||
Sbjct: 145315 agggctggcctggcttcctt 145334



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>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    atgtatataataccatgaac 202
              ||||||||||||||||||||
Sbjct: 279242 atgtatataataccatgaac 279223



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>gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome 16, complete sequence
          Length = 139767

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    agggctggcctggcttcctt 147
              ||||||||||||||||||||
Sbjct: 130200 agggctggcctggcttcctt 130181



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>gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, complete sequence
          Length = 116899

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 171   aactgaataattatgtatataata 194
             ||||||| ||||||||||||||||
Sbjct: 22243 aactgaagaattatgtatataata 22220



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>emb|AJ330651.1|HSA330651 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ4P-I15RS
          Length = 740

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 cgtcggtggctgcagcggct 347
           ||||||||||||||||||||
Sbjct: 17  cgtcggtggctgcagcggct 36



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>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3,
              complete sequence
          Length = 158520

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    aataattatgtatataatac 195
              ||||||||||||||||||||
Sbjct: 132444 aataattatgtatataatac 132425



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>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence
          Length = 184981

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttacaacagcaccacaggca 59
             ||||||||||||||||||||
Sbjct: 91428 ttacaacagcaccacaggca 91409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,162,379
Number of Sequences: 3902068
Number of extensions: 4162379
Number of successful extensions: 80226
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80059
Number of HSP's gapped (non-prelim): 157
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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