ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17l19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480204.1| Oryza sativa (japonica cultivar-group), mRNA 601 e-168
2dbj|AK059267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 601 e-168
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 464 e-127
4dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 464 e-127
5dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 464 e-127
6dbj|AK063413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 456 e-125
7gb|AY105468.1| Zea mays PCO107031 mRNA sequence 363 5e-97
8gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome... 359 7e-96
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 359 7e-96
10ref|NM_121685.2| Arabidopsis thaliana unknown protein AT5G16790 ... 66 2e-07
11gb|DQ446956.1| Arabidopsis thaliana clone pENTR221-At5g16790 unk... 66 2e-07
12emb|AL391147.1|ATF5E19 Arabidopsis thaliana DNA chromosome 5, BA... 66 2e-07
13gb|AY085831.1| Arabidopsis thaliana clone 18788 mRNA, complete s... 66 2e-07
14ref|NM_111165.2| Arabidopsis thaliana unknown protein AT3G02950 ... 60 1e-05
15gb|BT014879.1| Arabidopsis thaliana At3g02950 gene, complete cds 60 1e-05
16gb|AF424596.1|AF424596 Arabidopsis thaliana AT3g02950/F13E7_10 m... 60 1e-05
17emb|BX833515.1|CNS0A0K8 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
18gb|AC018363.8|ATAC018363 Arabidopsis thaliana chromosome III BAC... 44 0.57
19gb|AC016932.17| Homo sapiens 3 BAC RP11-166C10 (Roswell Park Can... 44 0.57
20gb|AC129313.4| Mus musculus BAC clone RP23-342K4 from chromosome... 42 2.2
21ref|NM_100463.1| Arabidopsis thaliana D-alanyl-D-alanine endopep... 40 8.8
22ref|XM_471268.1| Oryza sativa (japonica cultivar-group), predic... 40 8.8
23ref|XM_590227.2| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
24ref|XM_881424.1| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
25ref|XM_881410.1| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
26ref|XM_881396.1| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
27ref|XM_881382.1| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
28ref|XM_881363.1| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
29ref|XM_881343.1| PREDICTED: Bos taurus similar to ring finger pr... 40 8.8
30ref|XM_598276.2| PREDICTED: Bos taurus similar to DEAH (Asp-Glu-... 40 8.8
31gb|BC038348.1| Mus musculus ring finger protein 40, mRNA (cDNA c... 40 8.8
32gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosom... 40 8.8
33ref|XM_750447.1| Aspergillus fumigatus Af293 mitochondrial phosp... 40 8.8
34ref|XM_750448.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.8
35gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosom... 40 8.8
36gb|AC131759.3| Mus musculus BAC clone RP24-212D8 from chromosome... 40 8.8
37gb|AC122417.4| Mus musculus BAC clone RP24-159C12 from chromosom... 40 8.8
38gb|AC123938.3| Mus musculus BAC clone RP23-412I12 from chromosom... 40 8.8
39ref|XM_644401.1| Entamoeba histolytica HM-1:IMSS ccaat-box-bindi... 40 8.8
40gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, co... 40 8.8
41gb|AC115747.8| Mus musculus chromosome 10, clone RP23-8P5, compl... 40 8.8
42emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chro... 40 8.8
43emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chr... 40 8.8
44gb|AC158218.4| Mus musculus chromosome 8, clone RP23-196J23, com... 40 8.8
45emb|AL133232.15| Human DNA sequence from clone RP5-897D18 on chr... 40 8.8
46emb|AL606611.3|OSJN00044 Oryza sativa genomic DNA, chromosome 4,... 40 8.8
47emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 8.8
48gb|AC021558.10| Homo sapiens chromosome 8, clone RP11-746L20, co... 40 8.8
49dbj|AK143941.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 8.8
50dbj|AK154982.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 8.8
51dbj|AK171462.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 8.8
52dbj|AK042654.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 8.8
53dbj|AK080392.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 8.8
54dbj|AK089805.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 8.8
55dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
56gb|AC013288.7|AC013288 Arabidopsis thaliana chromosome 1 BAC F4N... 40 8.8
57gb|AF293902.1|AF293902 Saccamoeba limax small subunit ribosomal ... 40 8.8
58gb|AC084640.1|CBRG45J08 Caenorhabditis briggsae cosmid G45J08, c... 40 8.8
59ref|NM_031027.1| Rattus norvegicus dihydropyrimidine dehydrogena... 40 8.8
60ref|XM_579499.1| PREDICTED: Rattus norvegicus hypothetical gene ... 40 8.8
61dbj|AK129184.1| Mus musculus mRNA for mKIAA0661 protein 40 8.8
62gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thali... 40 8.8
63gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 40 8.8
64gb|AC107835.8| Mus musculus chromosome 8, clone RP23-267M21, com... 40 8.8
65emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-5... 40 8.8
66ref|NM_172281.1| Mus musculus ring finger protein 40 (Rnf40), mRNA 40 8.8
67dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.8
68emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on ch... 40 8.8
69gb|AY145442.1| Hartmannellidae sp. LOS7N/I small subunit ribosom... 40 8.8
70dbj|D85035.1| Rattus norvegicus mRNA for dihydropyrimidine dehyd... 40 8.8 
>ref|XM_480204.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1369

 Score =  601 bits (303), Expect = e-168
 Identities = 459/511 (89%)
 Strand = Plus / Minus

                                                                        
Query: 138  atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 197
            |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 1067 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 1008

                                                                        
Query: 198  gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 257
            |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 1007 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 948

                                                                        
Query: 258  tttgcaattcctccaccacatgaagaagaagagcaaactgcttcttcctaagctctaacg 317
            | |||| |||||| ||||||||||||||||||||||||||||||||||| || || |  |
Sbjct: 947  tctgcagttcctcgaccacatgaagaagaagagcaaactgcttcttccttagttccaggg 888

                                                                        
Query: 318  tccttgtacatgctgcactctctgcctccaaattagctatctccttctcaagattagcaa 377
            ||||| ||||||| | | |||| |||||||||||||| ||||||||||||||||  ||||
Sbjct: 887  tccttatacatgcagtattctcagcctccaaattagcaatctccttctcaagatccgcaa 828

                                                                        
Query: 378  taagtttctcggtttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcac 437
            | || || || |||||||| |||||||||||| | ||||||| ||||||||| ||||| |
Sbjct: 827  tgagcttttctgtttctgatcgtggaggctgcaaagaaatcatttttctgattgcttcgc 768

                                                                        
Query: 438  actcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaa 497
            ||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct: 767  actcctctttgtgctgcctctcaattttgctctgttccagttgcttcttgagatcctcaa 708

                                                                        
Query: 498  tatcagtctgagcttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctct 557
            ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 707  tatcagtctgagcttgcaagatttgtcgctgaatctcatcctgcagctcgttgaagctct 648

                                                                        
Query: 558  ccttctccctgagatttgcatcaactacagccttgcttttaagaaggggcaactcaaaag 617
            |||||||||| || ||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 647  ccttctccctaaggtttgcatcaacgacagccttgcttttaagaagaggcagctcaaaag 588

                                           
Query: 618  tattaatttcctgcagaaaggccttgtacag 648
            ||||||||||||| | |||||||||||||||
Sbjct: 587  tattaatttcctgtaaaaaggccttgtacag 557
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>dbj|AK059267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B05, full
            insert sequence
          Length = 1369

 Score =  601 bits (303), Expect = e-168
 Identities = 459/511 (89%)
 Strand = Plus / Minus

                                                                        
Query: 138  atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 197
            |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 1067 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 1008

                                                                        
Query: 198  gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 257
            |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 1007 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 948

                                                                        
Query: 258  tttgcaattcctccaccacatgaagaagaagagcaaactgcttcttcctaagctctaacg 317
            | |||| |||||| ||||||||||||||||||||||||||||||||||| || || |  |
Sbjct: 947  tctgcagttcctcgaccacatgaagaagaagagcaaactgcttcttccttagttccaggg 888

                                                                        
Query: 318  tccttgtacatgctgcactctctgcctccaaattagctatctccttctcaagattagcaa 377
            ||||| ||||||| | | |||| |||||||||||||| ||||||||||||||||  ||||
Sbjct: 887  tccttatacatgcagtattctcagcctccaaattagcaatctccttctcaagatccgcaa 828

                                                                        
Query: 378  taagtttctcggtttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcac 437
            | || || || |||||||| |||||||||||| | ||||||| ||||||||| ||||| |
Sbjct: 827  tgagcttttctgtttctgatcgtggaggctgcaaagaaatcatttttctgattgcttcgc 768

                                                                        
Query: 438  actcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaa 497
            ||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct: 767  actcctctttgtgctgcctctcaattttgctctgttccagttgcttcttgagatcctcaa 708

                                                                        
Query: 498  tatcagtctgagcttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctct 557
            ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 707  tatcagtctgagcttgcaagatttgtcgctgaatctcatcctgcagctcgttgaagctct 648

                                                                        
Query: 558  ccttctccctgagatttgcatcaactacagccttgcttttaagaaggggcaactcaaaag 617
            |||||||||| || ||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 647  ccttctccctaaggtttgcatcaacgacagccttgcttttaagaagaggcagctcaaaag 588

                                           
Query: 618  tattaatttcctgcagaaaggccttgtacag 648
            ||||||||||||| | |||||||||||||||
Sbjct: 587  tattaatttcctgtaaaaaggccttgtacag 557
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  464 bits (234), Expect = e-127
 Identities = 342/378 (90%)
 Strand = Plus / Plus

                                                                           
Query: 271     caccacatgaagaagaagagcaaactgcttcttcctaagctctaacgtccttgtacatgc 330
               |||||||||||||||||||||||||||||||||||| || || |  |||||| |||||||
Sbjct: 3515962 caccacatgaagaagaagagcaaactgcttcttccttagttccagggtccttatacatgc 3516021

                                                                           
Query: 331     tgcactctctgcctccaaattagctatctccttctcaagattagcaataagtttctcggt 390
                | | |||| |||||||||||||| ||||||||||||||||  ||||| || || || ||
Sbjct: 3516022 agtattctcagcctccaaattagcaatctccttctcaagatccgcaatgagcttttctgt 3516081

                                                                           
Query: 391     ttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcacactcctctttgtg 450
               |||||| |||||||||||| | ||||||| ||||||||| ||||| ||||||||||||||
Sbjct: 3516082 ttctgatcgtggaggctgcaaagaaatcatttttctgattgcttcgcactcctctttgtg 3516141

                                                                           
Query: 451     ctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaatatcagtctgagc 510
               |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 3516142 ctgcctctcaattttgctctgttccagttgcttcttgagatcctcaatatcagtctgagc 3516201

                                                                           
Query: 511     ttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctctccttctccctgag 570
               |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 3516202 ttgcaagatttgtcgctgaatctcatcctgcagctcgttgaagctctccttctccctaag 3516261

                                                                           
Query: 571     atttgcatcaactacagccttgcttttaagaaggggcaactcaaaagtattaatttcctg 630
                ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 3516262 gtttgcatcaacgacagccttgcttttaagaagaggcagctcaaaagtattaatttcctg 3516321

                                 
Query: 631     cagaaaggccttgtacag 648
                | |||||||||||||||
Sbjct: 3516322 taaaaaggccttgtacag 3516339



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                           
Query: 138     atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 197
               |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 3515438 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 3515497

                                                                           
Query: 198     gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 257
               |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 3515498 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 3515557

                            
Query: 258     tttgcaattcctc 270
               | |||| ||||||
Sbjct: 3515558 tctgcagttcctc 3515570
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498E12
          Length = 153523

 Score =  464 bits (234), Expect = e-127
 Identities = 342/378 (90%)
 Strand = Plus / Plus

                                                                          
Query: 271    caccacatgaagaagaagagcaaactgcttcttcctaagctctaacgtccttgtacatgc 330
              |||||||||||||||||||||||||||||||||||| || || |  |||||| |||||||
Sbjct: 149381 caccacatgaagaagaagagcaaactgcttcttccttagttccagggtccttatacatgc 149440

                                                                          
Query: 331    tgcactctctgcctccaaattagctatctccttctcaagattagcaataagtttctcggt 390
               | | |||| |||||||||||||| ||||||||||||||||  ||||| || || || ||
Sbjct: 149441 agtattctcagcctccaaattagcaatctccttctcaagatccgcaatgagcttttctgt 149500

                                                                          
Query: 391    ttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcacactcctctttgtg 450
              |||||| |||||||||||| | ||||||| ||||||||| ||||| ||||||||||||||
Sbjct: 149501 ttctgatcgtggaggctgcaaagaaatcatttttctgattgcttcgcactcctctttgtg 149560

                                                                          
Query: 451    ctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaatatcagtctgagc 510
              |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 149561 ctgcctctcaattttgctctgttccagttgcttcttgagatcctcaatatcagtctgagc 149620

                                                                          
Query: 511    ttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctctccttctccctgag 570
              |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 149621 ttgcaagatttgtcgctgaatctcatcctgcagctcgttgaagctctccttctccctaag 149680

                                                                          
Query: 571    atttgcatcaactacagccttgcttttaagaaggggcaactcaaaagtattaatttcctg 630
               ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 149681 gtttgcatcaacgacagccttgcttttaagaagaggcagctcaaaagtattaatttcctg 149740

                                
Query: 631    cagaaaggccttgtacag 648
               | |||||||||||||||
Sbjct: 149741 taaaaaggccttgtacag 149758



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                          
Query: 138    atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 197
              |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 148857 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 148916

                                                                          
Query: 198    gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 257
              |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 148917 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 148976

                           
Query: 258    tttgcaattcctc 270
              | |||| ||||||
Sbjct: 148977 tctgcagttcctc 148989
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score =  464 bits (234), Expect = e-127
 Identities = 342/378 (90%)
 Strand = Plus / Plus

                                                                         
Query: 271   caccacatgaagaagaagagcaaactgcttcttcctaagctctaacgtccttgtacatgc 330
             |||||||||||||||||||||||||||||||||||| || || |  |||||| |||||||
Sbjct: 71679 caccacatgaagaagaagagcaaactgcttcttccttagttccagggtccttatacatgc 71738

                                                                         
Query: 331   tgcactctctgcctccaaattagctatctccttctcaagattagcaataagtttctcggt 390
              | | |||| |||||||||||||| ||||||||||||||||  ||||| || || || ||
Sbjct: 71739 agtattctcagcctccaaattagcaatctccttctcaagatccgcaatgagcttttctgt 71798

                                                                         
Query: 391   ttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcacactcctctttgtg 450
             |||||| |||||||||||| | ||||||| ||||||||| ||||| ||||||||||||||
Sbjct: 71799 ttctgatcgtggaggctgcaaagaaatcatttttctgattgcttcgcactcctctttgtg 71858

                                                                         
Query: 451   ctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaatatcagtctgagc 510
             |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 71859 ctgcctctcaattttgctctgttccagttgcttcttgagatcctcaatatcagtctgagc 71918

                                                                         
Query: 511   ttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctctccttctccctgag 570
             |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 71919 ttgcaagatttgtcgctgaatctcatcctgcagctcgttgaagctctccttctccctaag 71978

                                                                         
Query: 571   atttgcatcaactacagccttgcttttaagaaggggcaactcaaaagtattaatttcctg 630
              ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 71979 gtttgcatcaacgacagccttgcttttaagaagaggcagctcaaaagtattaatttcctg 72038

                               
Query: 631   cagaaaggccttgtacag 648
              | |||||||||||||||
Sbjct: 72039 taaaaaggccttgtacag 72056



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                         
Query: 138   atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 197
             |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 71155 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 71214

                                                                         
Query: 198   gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 257
             |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 71215 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 71274

                          
Query: 258   tttgcaattcctc 270
             | |||| ||||||
Sbjct: 71275 tctgcagttcctc 71287
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>dbj|AK063413.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B06, full
           insert sequence
          Length = 1196

 Score =  456 bits (230), Expect = e-125
 Identities = 444/513 (86%), Gaps = 3/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 138 atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactt-t 196
           ||||||||| |||||| ||||| |||||| ||||||| ||||| ||| ||||||  || |
Sbjct: 900 atcagtctaaagccatggcatctgaagcatcgccgctaccttcatctgtgctcatgttct 841

                                                                       
Query: 197 g--gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattg 254
           |  |||||||||   |||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 840 gctgctcttcagcgccagctctcagctcatccgctatgctcctctgctcatcttcgattg 781

                                                                       
Query: 255 agatttgcaattcctccaccacatgaagaagaagagcaaactgcttcttcctaagctcta 314
           |||| ||||||||||| ||||||||||||||||||| || |||||||||||| || || |
Sbjct: 780 agatctgcaattcctcgaccacatgaagaagaagagaaagctgcttcttccttagttcca 721

                                                                       
Query: 315 acgtccttgtacatgctgcactctctgcctccaaattagctatctccttctcaagattag 374
             |||||| ||||||||| | |||| |||||||||||||| |||||||||||||||   |
Sbjct: 720 gagtccttatacatgctgtattctcggcctccaaattagcaatctccttctcaagacccg 661

                                                                       
Query: 375 caataagtttctcggtttctgaccgtggaggctgcgaggaaatcaattttctgatcgctt 434
           | || || ||||| ||||| || |||||||||||| | ||||||| ||||||||||||||
Sbjct: 660 cgatgagcttctctgtttccgatcgtggaggctgcaaagaaatcatttttctgatcgctt 601

                                                                       
Query: 435 cacactcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaagatcct 494
           | ||||||||||||| | ||||||||||  |||||||||| ||||  || || || ||||
Sbjct: 600 cgcactcctctttgtacagcctctcaattctgctctgttccagtttctttttgagttcct 541

                                                                       
Query: 495 caatatcagtctgagcttgcaagatttgtcgctggatctcaacctgcagctcgttgaagc 554
           |||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||
Sbjct: 540 caatatcagtctgagcttgcaagatttgtcgctgaatctcgtcttgcagctcgttgaagc 481

                                                                       
Query: 555 tctccttctccctgagatttgcatcaactacagccttgcttttaagaaggggcaactcaa 614
           ||||||||||||| || ||||||||||| || |||||||| |||||||| |||||| |||
Sbjct: 480 tctccttctccctaaggtttgcatcaaccacggccttgctcttaagaagaggcaacacaa 421

                                            
Query: 615 aagtattaatttcctgcagaaaggccttgtaca 647
           ||| |||||||||||| | ||||||||||||||
Sbjct: 420 aagcattaatttcctgtaaaaaggccttgtaca 388
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>gb|AY105468.1| Zea mays PCO107031 mRNA sequence
          Length = 970

 Score =  363 bits (183), Expect = 5e-97
 Identities = 376/439 (85%), Gaps = 1/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 211 agctctcagctcatctgctatgttcctttgctcatcttcgattgagatttgcaattcctc 270
           |||||||||||||||||||||  || | ||||||||||| || ||||| |||||||||||
Sbjct: 824 agctctcagctcatctgctatactcttctgctcatcttcaatcgagatctgcaattcctc 765

                                                                       
Query: 271 caccacatgaagaagaagagcaaactgcttcttcc-taagctctaacgtccttgtacatg 329
            |||||||| |||||||| |||||||||||||||| | || || || |||||| | ||||
Sbjct: 764 aaccacatgtagaagaagggcaaactgcttcttccctcagttccaaagtccttatgcatg 705

                                                                       
Query: 330 ctgcactctctgcctccaaattagctatctccttctcaagattagcaataagtttctcgg 389
           || || |||| |||| ||||| || ||||||||||||||| |  ||||| ||||| || |
Sbjct: 704 ctacattctccgccttcaaatcagttatctccttctcaaggtctgcaatgagtttttcag 645

                                                                       
Query: 390 tttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcacactcctctttgt 449
           |||||||||||||||||||| |   |||||  || | ||| ||||||||||| |||||||
Sbjct: 644 tttctgaccgtggaggctgcaaactaatcagcttccggatggcttcacactcttctttgt 585

                                                                       
Query: 450 gctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaatatcagtctgag 509
           |||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||
Sbjct: 584 gctgcctctcaatcttgctctgctcaagttgcttcttaaggtcctcaatatcagtcttag 525

                                                                       
Query: 510 cttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctctccttctccctga 569
           | |||||||| |||||||  ||||||||||||||||| || ||||| || |||||||| |
Sbjct: 524 catgcaagatctgtcgctcaatctcaacctgcagctcattaaagctttctttctccctaa 465

                                                                       
Query: 570 gatttgcatcaactacagccttgcttttaagaaggggcaactcaaaagtattaatttcct 629
             ||||||||||| |||||||||||||| ||||| || | |||||| || |||||||| |
Sbjct: 464 tgtttgcatcaaccacagccttgcttttcagaagaggtagctcaaaggtgttaatttcat 405

                              
Query: 630 gcagaaaggccttgtacag 648
           | |||||||||||||||||
Sbjct: 404 gtagaaaggccttgtacag 386
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>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0040E06, complete sequence
          Length = 160907

 Score =  359 bits (181), Expect = 7e-96
 Identities = 328/377 (87%)
 Strand = Plus / Plus

                                                                         
Query: 271   caccacatgaagaagaagagcaaactgcttcttcctaagctctaacgtccttgtacatgc 330
             |||||||||||||||||||| || |||||||||||| || || |  |||||| |||||||
Sbjct: 70130 caccacatgaagaagaagagaaagctgcttcttccttagttccagagtccttatacatgc 70189

                                                                         
Query: 331   tgcactctctgcctccaaattagctatctccttctcaagattagcaataagtttctcggt 390
             || | |||| |||||||||||||| |||||||||||||||   || || || ||||| ||
Sbjct: 70190 tgtattctcggcctccaaattagcaatctccttctcaagacccgcgatgagcttctctgt 70249

                                                                         
Query: 391   ttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcacactcctctttgtg 450
             ||| || |||||||||||| | ||||||| ||||||||||||||| ||||||||||||| 
Sbjct: 70250 ttccgatcgtggaggctgcaaagaaatcatttttctgatcgcttcgcactcctctttgta 70309

                                                                         
Query: 451   ctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaatatcagtctgagc 510
             | ||||||||||  |||||||||| ||||  || || || ||||||||||||||||||||
Sbjct: 70310 cagcctctcaattctgctctgttccagtttctttttgagttcctcaatatcagtctgagc 70369

                                                                         
Query: 511   ttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctctccttctccctgag 570
             |||||||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||
Sbjct: 70370 ttgcaagatttgtcgctgaatctcgtcttgcagctcgttgaagctctccttctccctaag 70429

                                                                         
Query: 571   atttgcatcaactacagccttgcttttaagaaggggcaactcaaaagtattaatttcctg 630
              ||||||||||| || |||||||| |||||||| |||||| |||||| ||||||||||||
Sbjct: 70430 gtttgcatcaaccacggccttgctcttaagaagaggcaacacaaaagcattaatttcctg 70489

                              
Query: 631   cagaaaggccttgtaca 647
              | ||||||||||||||
Sbjct: 70490 taaaaaggccttgtaca 70506



 Score =  165 bits (83), Expect = 2e-37
 Identities = 128/143 (89%)
 Strand = Plus / Minus

                                                                         
Query: 488   agatcctcaatatcagtctgagcttgcaagatttgtcgctggatctcaacctgcagctcg 547
             |||||||||||||||||||||||||||||||||||||| || |||||    |||||||||
Sbjct: 95952 agatcctcaatatcagtctgagcttgcaagatttgtcgttgaatctcgtattgcagctcg 95893

                                                                         
Query: 548   ttgaagctctccttctccctgagatttgcatcaactacagccttgcttttaagaaggggc 607
             ||||||||||| |||||||| || ||||||||||| || || |||| ||||| ||| |||
Sbjct: 95892 ttgaagctctctttctccctaaggtttgcatcaaccacggctttgcctttaataagaggc 95833

                                    
Query: 608   aactcaaaagtattaatttcctg 630
             |||||||||||||||||||||||
Sbjct: 95832 aactcaaaagtattaatttcctg 95810



 Score =  105 bits (53), Expect = 2e-19
 Identities = 117/136 (86%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                         
Query: 138   atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactt-t 196
             ||||||||| |||||| ||||| |||||| ||||||| ||||| ||| ||||||  || |
Sbjct: 69661 atcagtctaaagccatggcatctgaagcatcgccgctaccttcatctgtgctcatgttct 69720

                                                                         
Query: 197   g--gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattg 254
             |  |||||||||   |||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 69721 gctgctcttcagcgccagctctcagctcatccgctatgctcctctgctcatcttcgattg 69780

                             
Query: 255   agatttgcaattcctc 270
             |||| |||||||||||
Sbjct: 69781 agatctgcaattcctc 69796
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  359 bits (181), Expect = 7e-96
 Identities = 328/377 (87%)
 Strand = Plus / Plus

                                                                            
Query: 271      caccacatgaagaagaagagcaaactgcttcttcctaagctctaacgtccttgtacatgc 330
                |||||||||||||||||||| || |||||||||||| || || |  |||||| |||||||
Sbjct: 28137455 caccacatgaagaagaagagaaagctgcttcttccttagttccagagtccttatacatgc 28137514

                                                                            
Query: 331      tgcactctctgcctccaaattagctatctccttctcaagattagcaataagtttctcggt 390
                || | |||| |||||||||||||| |||||||||||||||   || || || ||||| ||
Sbjct: 28137515 tgtattctcggcctccaaattagcaatctccttctcaagacccgcgatgagcttctctgt 28137574

                                                                            
Query: 391      ttctgaccgtggaggctgcgaggaaatcaattttctgatcgcttcacactcctctttgtg 450
                ||| || |||||||||||| | ||||||| ||||||||||||||| ||||||||||||| 
Sbjct: 28137575 ttccgatcgtggaggctgcaaagaaatcatttttctgatcgcttcgcactcctctttgta 28137634

                                                                            
Query: 451      ctgcctctcaatcttgctctgttcaagttgtttcttaagatcctcaatatcagtctgagc 510
                | ||||||||||  |||||||||| ||||  || || || ||||||||||||||||||||
Sbjct: 28137635 cagcctctcaattctgctctgttccagtttctttttgagttcctcaatatcagtctgagc 28137694

                                                                            
Query: 511      ttgcaagatttgtcgctggatctcaacctgcagctcgttgaagctctccttctccctgag 570
                |||||||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||
Sbjct: 28137695 ttgcaagatttgtcgctgaatctcgtcttgcagctcgttgaagctctccttctccctaag 28137754

                                                                            
Query: 571      atttgcatcaactacagccttgcttttaagaaggggcaactcaaaagtattaatttcctg 630
                 ||||||||||| || |||||||| |||||||| |||||| |||||| ||||||||||||
Sbjct: 28137755 gtttgcatcaaccacggccttgctcttaagaagaggcaacacaaaagcattaatttcctg 28137814

                                 
Query: 631      cagaaaggccttgtaca 647
                 | ||||||||||||||
Sbjct: 28137815 taaaaaggccttgtaca 28137831



 Score =  165 bits (83), Expect = 2e-37
 Identities = 128/143 (89%)
 Strand = Plus / Minus

                                                                            
Query: 488      agatcctcaatatcagtctgagcttgcaagatttgtcgctggatctcaacctgcagctcg 547
                |||||||||||||||||||||||||||||||||||||| || |||||    |||||||||
Sbjct: 28163277 agatcctcaatatcagtctgagcttgcaagatttgtcgttgaatctcgtattgcagctcg 28163218

                                                                            
Query: 548      ttgaagctctccttctccctgagatttgcatcaactacagccttgcttttaagaaggggc 607
                ||||||||||| |||||||| || ||||||||||| || || |||| ||||| ||| |||
Sbjct: 28163217 ttgaagctctctttctccctaaggtttgcatcaaccacggctttgcctttaataagaggc 28163158

                                       
Query: 608      aactcaaaagtattaatttcctg 630
                |||||||||||||||||||||||
Sbjct: 28163157 aactcaaaagtattaatttcctg 28163135



 Score =  105 bits (53), Expect = 2e-19
 Identities = 117/136 (86%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                            
Query: 138      atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactt-t 196
                ||||||||| |||||| ||||| |||||| ||||||| ||||| ||| ||||||  || |
Sbjct: 28136986 atcagtctaaagccatggcatctgaagcatcgccgctaccttcatctgtgctcatgttct 28137045

                                                                            
Query: 197      g--gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattg 254
                |  |||||||||   |||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 28137046 gctgctcttcagcgccagctctcagctcatccgctatgctcctctgctcatcttcgattg 28137105

                                
Query: 255      agatttgcaattcctc 270
                |||| |||||||||||
Sbjct: 28137106 agatctgcaattcctc 28137121
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>ref|NM_121685.2| Arabidopsis thaliana unknown protein AT5G16790 mRNA, complete cds
          Length = 956

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 431 gcttcacactcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaaga 490
           ||||||||||||||||| || || ||||| ||||| ||||  ||||| ||||||||||||
Sbjct: 548 gcttcacactcctctttctgttgtctctctatcttactctcctcaagctgtttcttaaga 489

                        
Query: 491 tcctcaatatcag 503
           || || |||||||
Sbjct: 488 tcttctatatcag 476
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>gb|DQ446956.1| Arabidopsis thaliana clone pENTR221-At5g16790 unknown (At5g16790)
           mRNA, complete cds
          Length = 702

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 431 gcttcacactcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaaga 490
           ||||||||||||||||| || || ||||| ||||| ||||  ||||| ||||||||||||
Sbjct: 440 gcttcacactcctctttctgttgtctctctatcttactctcctcaagctgtttcttaaga 381

                        
Query: 491 tcctcaatatcag 503
           || || |||||||
Sbjct: 380 tcttctatatcag 368
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>emb|AL391147.1|ATF5E19 Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project)
          Length = 77976

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                         
Query: 431   gcttcacactcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaaga 490
             ||||||||||||||||| || || ||||| ||||| ||||  ||||| ||||||||||||
Sbjct: 57106 gcttcacactcctctttctgttgtctctctatcttactctcctcaagctgtttcttaaga 57165

                          
Query: 491   tcctcaatatcag 503
             || || |||||||
Sbjct: 57166 tcttctatatcag 57178
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>gb|AY085831.1| Arabidopsis thaliana clone 18788 mRNA, complete sequence
          Length = 946

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 431 gcttcacactcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaaga 490
           ||||||||||||||||| || || ||||| ||||| ||||  ||||| ||||||||||||
Sbjct: 539 gcttcacactcctctttctgttgtctctctatcttactctcctcaagctgtttcttaaga 480

                        
Query: 491 tcctcaatatcag 503
           || || |||||||
Sbjct: 479 tcttctatatcag 467
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>ref|NM_111165.2| Arabidopsis thaliana unknown protein AT3G02950 mRNA, complete cds
          Length = 1131

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 239 tgctcatcttcgattgagatttgcaattcctccaccacatgaagaagaagagcaaactgc 298
           ||||||||||| |||| | | ||||| || ||||||||||| |  || ||||||||||||
Sbjct: 782 tgctcatcttccattgtgttctgcaactcatccaccacatgcatcaggagagcaaactgc 723

                         
Query: 299 ttcttcctaagctc 312
           |||||||| |||||
Sbjct: 722 ttcttccttagctc 709
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>gb|BT014879.1| Arabidopsis thaliana At3g02950 gene, complete cds
          Length = 711

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 239 tgctcatcttcgattgagatttgcaattcctccaccacatgaagaagaagagcaaactgc 298
           ||||||||||| |||| | | ||||| || ||||||||||| |  || ||||||||||||
Sbjct: 635 tgctcatcttccattgtgttctgcaactcatccaccacatgcatcaggagagcaaactgc 576

                         
Query: 299 ttcttcctaagctc 312
           |||||||| |||||
Sbjct: 575 ttcttccttagctc 562
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>gb|AF424596.1|AF424596 Arabidopsis thaliana AT3g02950/F13E7_10 mRNA, complete cds
          Length = 1131

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 239 tgctcatcttcgattgagatttgcaattcctccaccacatgaagaagaagagcaaactgc 298
           ||||||||||| |||| | | ||||| || ||||||||||| |  || ||||||||||||
Sbjct: 782 tgctcatcttccattgtgttctgcaactcatccaccacatgcatcaggagagcaaactgc 723

                         
Query: 299 ttcttcctaagctc 312
           |||||||| |||||
Sbjct: 722 ttcttccttagctc 709
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>emb|BX833515.1|CNS0A0K8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL5ZC06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 950

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 431 gcttcacactcctctttgtgctgcctctcaatcttgctctgttcaagttgtttcttaaga 490
           ||||||||||||||||| || || ||||| ||||  ||||  ||||| ||||||||||||
Sbjct: 548 gcttcacactcctctttctgttgtctctctatctcactctcctcaagctgtttcttaaga 489

             
Query: 491 tc 492
           ||
Sbjct: 488 tc 487
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>gb|AC018363.8|ATAC018363 Arabidopsis thaliana chromosome III BAC F13E7 genomic sequence,
             complete sequence
          Length = 100559

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 287   agagcaaactgcttcttcctaagctc 312
             |||||||||||||||||||| |||||
Sbjct: 20458 agagcaaactgcttcttccttagctc 20433
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>gb|AC016932.17| Homo sapiens 3 BAC RP11-166C10 (Roswell Park Cancer Institute Human Bac
             Library) complete sequence
          Length = 89000

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 320   cttgtacatgctgcactctctgcctccaaa 349
             ||||||||||||| ||||||||||| ||||
Sbjct: 75956 cttgtacatgctgtactctctgcctgcaaa 75985
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>gb|AC129313.4| Mus musculus BAC clone RP23-342K4 from chromosome 8, complete sequence
          Length = 215576

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 624    tttcctgcagaaaggccttgtacag 648
              ||||||||||||||||||| |||||
Sbjct: 159111 tttcctgcagaaaggccttctacag 159087
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>ref|NM_100463.1| Arabidopsis thaliana D-alanyl-D-alanine endopeptidase/ peptidase
           AT1G05820 mRNA, complete cds
          Length = 1326

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 acatgaagaagaagagcaaa 294
           ||||||||||||||||||||
Sbjct: 814 acatgaagaagaagagcaaa 795
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>ref|XM_471268.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4230

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 263  aattcctccaccacatgaag 282
            ||||||||||||||||||||
Sbjct: 1169 aattcctccaccacatgaag 1150
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>ref|XM_590227.2| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 1 (LOC539901), mRNA
          Length = 4836

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2820 gttgaagctctccttctccc 2801
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>ref|XM_881424.1| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 8 (LOC539901), mRNA
          Length = 4776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2760 gttgaagctctccttctccc 2741
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>ref|XM_881410.1| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 7 (LOC539901), mRNA
          Length = 4770

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2754 gttgaagctctccttctccc 2735
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>ref|XM_881396.1| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 6 (LOC539901), mRNA
          Length = 4773

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2757 gttgaagctctccttctccc 2738
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>ref|XM_881382.1| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 5 (LOC539901), mRNA
          Length = 4716

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2700 gttgaagctctccttctccc 2681
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>ref|XM_881363.1| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 4 (LOC539901), mRNA
          Length = 4536

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2520 gttgaagctctccttctccc 2501
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>ref|XM_881343.1| PREDICTED: Bos taurus similar to ring finger protein 40 isoform 2,
            transcript variant 3 (LOC539901), mRNA
          Length = 4458

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2820 gttgaagctctccttctccc 2801
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>ref|XM_598276.2| PREDICTED: Bos taurus similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 38 (LOC520046), mRNA
          Length = 4289

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  accacatgaagaagaagagc 291
            ||||||||||||||||||||
Sbjct: 1754 accacatgaagaagaagagc 1773
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>gb|BC038348.1| Mus musculus ring finger protein 40, mRNA (cDNA clone MGC:19037
            IMAGE:4187484), complete cds
          Length = 4078

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2812 gttgaagctctccttctccc 2793
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>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence
          Length = 204278

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   gttgaagctctccttctccc 566
             ||||||||||||||||||||
Sbjct: 61051 gttgaagctctccttctccc 61032
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>ref|XM_750447.1| Aspergillus fumigatus Af293 mitochondrial phosphate transporter
           (Afu2g12080) partial mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 538 ctgcagctcgttgaagctctcctt 561
           ||||||| ||||||||||||||||
Sbjct: 618 ctgcagcgcgttgaagctctcctt 595
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>ref|XM_750448.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g12090)
           partial mRNA
          Length = 759

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 538 ctgcagctcgttgaagctctcctt 561
           ||||||| ||||||||||||||||
Sbjct: 487 ctgcagcgcgttgaagctctcctt 510
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>gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosome 12, complete
             sequence
          Length = 208710

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 434   tcacactcctctttgtgctgcctc 457
             ||||||| ||||||||||||||||
Sbjct: 21249 tcacactgctctttgtgctgcctc 21272
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>gb|AC131759.3| Mus musculus BAC clone RP24-212D8 from chromosome 12, complete sequence
          Length = 166128

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 434   tcacactcctctttgtgctgcctc 457
             ||||||| ||||||||||||||||
Sbjct: 24682 tcacactgctctttgtgctgcctc 24659
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>gb|AC122417.4| Mus musculus BAC clone RP24-159C12 from chromosome 7, complete sequence
          Length = 188555

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    gttgaagctctccttctccc 566
              ||||||||||||||||||||
Sbjct: 150972 gttgaagctctccttctccc 150953
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>gb|AC123938.3| Mus musculus BAC clone RP23-412I12 from chromosome 8, complete sequence
          Length = 193352

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    caattcctccaccacatgaa 281
              ||||||||||||||||||||
Sbjct: 189190 caattcctccaccacatgaa 189209
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>ref|XM_644401.1| Entamoeba histolytica HM-1:IMSS ccaat-box-binding transcription
            factor (297.t00009) partial mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 272  accacatgaagaagaagagcaaac 295
            |||||||||||||||||| |||||
Sbjct: 1611 accacatgaagaagaagaacaaac 1634
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>gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, complete sequence
          Length = 144972

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cttacagtttaagaaaccca 32
             ||||||||||||||||||||
Sbjct: 21424 cttacagtttaagaaaccca 21443
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>gb|AC115747.8| Mus musculus chromosome 10, clone RP23-8P5, complete sequence
          Length = 193706

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cttacagtttaagaaaccca 32
             ||||||||||||||||||||
Sbjct: 12607 cttacagtttaagaaaccca 12588
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>emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chromosome 6 Contains the
             5' end of the TReP-132 gene for zinc finger transcription
             protein, complete sequence
          Length = 88119

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   tgtacatgctgcactctctg 341
             ||||||||||||||||||||
Sbjct: 64781 tgtacatgctgcactctctg 64800
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>emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chromosome 13 Contains a
             novel FLJ31073 containing gene, six novel genes and a CpG
             island, complete sequence
          Length = 176930

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   acagccttgcttttaagaag 603
             ||||||||||||||||||||
Sbjct: 58097 acagccttgcttttaagaag 58078
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>gb|AC158218.4| Mus musculus chromosome 8, clone RP23-196J23, complete sequence
          Length = 239980

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    ctcctctttgtgctgcctct 458
              ||||||||||||||||||||
Sbjct: 238524 ctcctctttgtgctgcctct 238505
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>emb|AL133232.15| Human DNA sequence from clone RP5-897D18 on chromosome 20 Contains part
             of a gene for a  putative novel protein, EST, STSs and
             GSSs, complete sequence
          Length = 95097

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttacagtttaagaaacccag 33
             ||||||||||||||||||||
Sbjct: 17496 ttacagtttaagaaacccag 17477
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>emb|AL606611.3|OSJN00044 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0043H09,
             complete sequence
          Length = 88824

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   aattcctccaccacatgaag 282
             ||||||||||||||||||||
Sbjct: 21343 aattcctccaccacatgaag 21324
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     tctacagccattgcatccga 162
               ||||||||||||||||||||
Sbjct: 1484385 tctacagccattgcatccga 1484366
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>gb|AC021558.10| Homo sapiens chromosome 8, clone RP11-746L20, complete sequence
          Length = 171582

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 321    ttgtacatgctgcactctctgcct 344
              ||||||||||||| ||||||||||
Sbjct: 121554 ttgtacatgctgccctctctgcct 121531
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>dbj|AK143941.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:F530003L12 product:hypothetical protein,
           full insert sequence
          Length = 2971

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 610 ctcaaaagtattaatttcct 629
           ||||||||||||||||||||
Sbjct: 190 ctcaaaagtattaatttcct 209
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>dbj|AK154982.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630113L02
            product:ring finger protein 40, full insert sequence
          Length = 4078

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2829 gttgaagctctccttctccc 2810
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>dbj|AK171462.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730216P17
            product:ring finger protein 40, full insert sequence
          Length = 3867

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2827 gttgaagctctccttctccc 2808
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>dbj|AK042654.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730013O04 product:KIAA0661
            PROTEIN (95 KDA RETINOBLASTOMA PROTEIN BINDING PROTEIN,
            KIAA0661 GENE PRODUCT) (SIMILAR TO 95 KDA RETINOBLASTOMA
            PROTEIN BINDING PROTEIN) homolog [Homo sapiens], full
            insert sequence
          Length = 3166

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 1558 gttgaagctctccttctccc 1539
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>dbj|AK080392.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630090P18 product:hypothetical protein,
           full insert sequence
          Length = 3040

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 547 gttgaagctctccttctccc 566
           ||||||||||||||||||||
Sbjct: 310 gttgaagctctccttctccc 329
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>dbj|AK089805.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830023M01 product:95 KDA RETINOBLASTOMA
            PROTEIN BINDING PROTEIN homolog [Homo sapiens], full
            insert sequence
          Length = 3868

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2830 gttgaagctctccttctccc 2811
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     aattcctccaccacatgaag 282
               ||||||||||||||||||||
Sbjct: 9337972 aattcctccaccacatgaag 9337953
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>gb|AC013288.7|AC013288 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete
             sequence
          Length = 96899

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   aatcaattttctgatcgctt 434
             ||||||||||||||||||||
Sbjct: 78745 aatcaattttctgatcgctt 78764
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>gb|AF293902.1|AF293902 Saccamoeba limax small subunit ribosomal RNA gene, complete
           sequence
          Length = 1908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 593 cttttaagaaggggcaactc 612
           ||||||||||||||||||||
Sbjct: 766 cttttaagaaggggcaactc 785
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>gb|AC084640.1|CBRG45J08 Caenorhabditis briggsae cosmid G45J08, complete sequence
          Length = 42710

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  tccttctcaagattagcaat 378
            ||||||||||||||||||||
Sbjct: 3024 tccttctcaagattagcaat 3043
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>ref|NM_031027.1| Rattus norvegicus dihydropyrimidine dehydrogenase (Dpyd), mRNA
          Length = 4358

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 322  tgtacatgctgcactctctgcctc 345
            |||||| |||||||||||||||||
Sbjct: 3014 tgtacaggctgcactctctgcctc 3037
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>ref|XM_579499.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031027
            (LOC497764), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 322  tgtacatgctgcactctctgcctc 345
            |||||| |||||||||||||||||
Sbjct: 3013 tgtacaggctgcactctctgcctc 3036
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>dbj|AK129184.1| Mus musculus mRNA for mKIAA0661 protein
          Length = 4059

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2816 gttgaagctctccttctccc 2797
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>gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 79554

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   acatgaagaagaagagcaaa 294
             ||||||||||||||||||||
Sbjct: 30154 acatgaagaagaagagcaaa 30135
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>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  ctcaaaagtattaatttcct 629
            ||||||||||||||||||||
Sbjct: 1408 ctcaaaagtattaatttcct 1389
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>gb|AC107835.8| Mus musculus chromosome 8, clone RP23-267M21, complete sequence
          Length = 179297

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    ctcctctttgtgctgcctct 458
              ||||||||||||||||||||
Sbjct: 135652 ctcctctttgtgctgcctct 135671
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>emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-55G7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160718

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 559    cttctccctgagatttgcat 578
              ||||||||||||||||||||
Sbjct: 150340 cttctccctgagatttgcat 150321
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>ref|NM_172281.1| Mus musculus ring finger protein 40 (Rnf40), mRNA
          Length = 4078

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  gttgaagctctccttctccc 566
            ||||||||||||||||||||
Sbjct: 2812 gttgaagctctccttctccc 2793
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>dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39E03, TM0266,
             complete sequence
          Length = 113459

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   cactctctgcctccaaatta 352
             ||||||||||||||||||||
Sbjct: 30098 cactctctgcctccaaatta 30079
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>emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on chromosome 4, complete
              sequence
          Length = 180239

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 555    tctccttctccctgagattt 574
              ||||||||||||||||||||
Sbjct: 168986 tctccttctccctgagattt 169005
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>gb|AY145442.1| Hartmannellidae sp. LOS7N/I small subunit ribosomal RNA gene,
           complete sequence
          Length = 1865

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 593 cttttaagaaggggcaactc 612
           ||||||||||||||||||||
Sbjct: 748 cttttaagaaggggcaactc 767
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>dbj|D85035.1| Rattus norvegicus mRNA for dihydropyrimidine dehydrogenase, complete
            cds
          Length = 4358

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 322  tgtacatgctgcactctctgcctc 345
            |||||| |||||||||||||||||
Sbjct: 3014 tgtacaggctgcactctctgcctc 3037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,301,962
Number of Sequences: 3902068
Number of extensions: 7301962
Number of successful extensions: 125847
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125604
Number of HSP's gapped (non-prelim): 236
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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