| Clone Name | rbags18a15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028P13, full insert sequence Length = 1234 Score = 287 bits (145), Expect = 2e-74 Identities = 378/455 (83%), Gaps = 3/455 (0%) Strand = Plus / Minus Query: 234 cttgtcggtgaaccaggtgaattctccatcgtcaagcacagccatctcaacggggagcaa 293 |||||| |||||||| |||||||| ||||| | ||| |||||||| || || || ||||| Sbjct: 941 cttgtcagtgaaccaagtgaattccccatcttgaagtacagccatttctacaggcagcaa 882 Query: 294 atcaga---agttttcttgtccgaaatcgccttctgcacagcaccagctttcccagcccc 350 |||||| ||| | ||| || |||| || |||||||| ||||||||||||||||| || Sbjct: 881 atcagacgaagtctgcttatctgaaagtgctttctgcactgcaccagctttcccagctcc 822 Query: 351 agttaccaccatggcgacatatgcagaggagttgatcaccgggaacgtgaatgtgattct 410 ||| |||||||| |||||||| ||||| ||||||||||| || || || || || ||||| Sbjct: 821 agtgaccaccattgcgacatacgcagatgagttgatcacaggaaatgtaaacgtaattct 762 Query: 411 ctgtggtggcggctttggagagtccaagatgtgggtgacccacttcttgttctctttaac 470 || ||||| ||||||||||| ||| ||||| |||||||||||||||||| || ||||| Sbjct: 761 ctcaggtggtggctttggagaatccttgatgtaggtgacccacttcttgttttcattaac 702 Query: 471 aagtggatggcctgggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctg 530 ||| || ||||||||||| ||||| || || || || ||||||||||| || || ||| Sbjct: 701 aagagggtggcctgggaaaagagatgcaatatggccatcagggcccattcccaggagcat 642 Query: 531 cagatcgaacctgggaaacccagttgtttttgacattgcaaggacaccattcttaacaag 590 | ||| ||||| ||||||||||| | || |||||||||| ||||||||||| ||||| Sbjct: 641 gacatcaaacctaggaaacccagtcgattgcgacattgcaatcacaccattcttgacaag 582 Query: 591 ttgcttcaagatggtttcatagtcctctgctgctccttcagcagataaggcatcattgat 650 |||||||||| ||||||||||| || |||||||| ||||| || ||||||||||| || Sbjct: 581 ttgcttcaagcaagtttcatagtcatccgctgctccctcagctgacaaggcatcatttat 522 Query: 651 agcatacacttgaccagtaggaattggtaccttgg 685 |||||| ||||| |||||||||||||| ||||||| Sbjct: 521 agcataaacttggccagtaggaattgggaccttgg 487
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 281 bits (142), Expect = 1e-72 Identities = 375/452 (82%), Gaps = 3/452 (0%) Strand = Plus / Plus Query: 234 cttgtcggtgaaccaggtgaattctccatcgtcaagcacagccatctcaacggggagcaa 293 |||||| |||||||| |||||||| ||||| | ||| |||||||| || || || ||||| Sbjct: 20423859 cttgtcagtgaaccaagtgaattccccatcttgaagtacagccatttctacaggcagcaa 20423918 Query: 294 atcaga---agttttcttgtccgaaatcgccttctgcacagcaccagctttcccagcccc 350 |||||| ||| | ||| || |||| || |||||||| ||||||||||||||||| || Sbjct: 20423919 atcagacgaagtctgcttatctgaaagtgctttctgcactgcaccagctttcccagctcc 20423978 Query: 351 agttaccaccatggcgacatatgcagaggagttgatcaccgggaacgtgaatgtgattct 410 ||| |||||||| |||||||| ||||| ||||||||||| || || || || || ||||| Sbjct: 20423979 agtgaccaccattgcgacatacgcagatgagttgatcacaggaaatgtaaacgtaattct 20424038 Query: 411 ctgtggtggcggctttggagagtccaagatgtgggtgacccacttcttgttctctttaac 470 || ||||| ||||||||||| ||| ||||| |||||||||||||||||| || ||||| Sbjct: 20424039 ctcaggtggtggctttggagaatccttgatgtaggtgacccacttcttgttttcattaac 20424098 Query: 471 aagtggatggcctgggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctg 530 ||| || ||||||||||| ||||| || || || || ||||||||||| || || ||| Sbjct: 20424099 aagagggtggcctgggaaaagagatgcaatatggccatcagggcccattcccaggagcat 20424158 Query: 531 cagatcgaacctgggaaacccagttgtttttgacattgcaaggacaccattcttaacaag 590 | ||| ||||| ||||||||||| | || |||||||||| ||||||||||| ||||| Sbjct: 20424159 gacatcaaacctaggaaacccagtcgattgcgacattgcaatcacaccattcttgacaag 20424218 Query: 591 ttgcttcaagatggtttcatagtcctctgctgctccttcagcagataaggcatcattgat 650 |||||||||| ||||||||||| || |||||||| ||||| || ||||||||||| || Sbjct: 20424219 ttgcttcaagcaagtttcatagtcatccgctgctccctcagctgacaaggcatcatttat 20424278 Query: 651 agcatacacttgaccagtaggaattggtacct 682 |||||| ||||| |||||||||||||| |||| Sbjct: 20424279 agcataaacttggccagtaggaattgggacct 20424310
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 281 bits (142), Expect = 1e-72 Identities = 375/452 (82%), Gaps = 3/452 (0%) Strand = Plus / Plus Query: 234 cttgtcggtgaaccaggtgaattctccatcgtcaagcacagccatctcaacggggagcaa 293 |||||| |||||||| |||||||| ||||| | ||| |||||||| || || || ||||| Sbjct: 51998 cttgtcagtgaaccaagtgaattccccatcttgaagtacagccatttctacaggcagcaa 52057 Query: 294 atcaga---agttttcttgtccgaaatcgccttctgcacagcaccagctttcccagcccc 350 |||||| ||| | ||| || |||| || |||||||| ||||||||||||||||| || Sbjct: 52058 atcagacgaagtctgcttatctgaaagtgctttctgcactgcaccagctttcccagctcc 52117 Query: 351 agttaccaccatggcgacatatgcagaggagttgatcaccgggaacgtgaatgtgattct 410 ||| |||||||| |||||||| ||||| ||||||||||| || || || || || ||||| Sbjct: 52118 agtgaccaccattgcgacatacgcagatgagttgatcacaggaaatgtaaacgtaattct 52177 Query: 411 ctgtggtggcggctttggagagtccaagatgtgggtgacccacttcttgttctctttaac 470 || ||||| ||||||||||| ||| ||||| |||||||||||||||||| || ||||| Sbjct: 52178 ctcaggtggtggctttggagaatccttgatgtaggtgacccacttcttgttttcattaac 52237 Query: 471 aagtggatggcctgggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctg 530 ||| || ||||||||||| ||||| || || || || ||||||||||| || || ||| Sbjct: 52238 aagagggtggcctgggaaaagagatgcaatatggccatcagggcccattcccaggagcat 52297 Query: 531 cagatcgaacctgggaaacccagttgtttttgacattgcaaggacaccattcttaacaag 590 | ||| ||||| ||||||||||| | || |||||||||| ||||||||||| ||||| Sbjct: 52298 gacatcaaacctaggaaacccagtcgattgcgacattgcaatcacaccattcttgacaag 52357 Query: 591 ttgcttcaagatggtttcatagtcctctgctgctccttcagcagataaggcatcattgat 650 |||||||||| ||||||||||| || |||||||| ||||| || ||||||||||| || Sbjct: 52358 ttgcttcaagcaagtttcatagtcatccgctgctccctcagctgacaaggcatcatttat 52417 Query: 651 agcatacacttgaccagtaggaattggtacct 682 |||||| ||||| |||||||||||||| |||| Sbjct: 52418 agcataaacttggccagtaggaattgggacct 52449
>gb|AY105837.1| Zea mays PCO124224 mRNA sequence Length = 1316 Score = 192 bits (97), Expect = 1e-45 Identities = 384/479 (80%), Gaps = 3/479 (0%) Strand = Plus / Minus Query: 210 gttctgcagcatcgacaccgcctccttgtcggtgaaccaggtgaattctccatcgtcaag 269 ||||||||||| |||||||| |||| || ||||||||||||||||||||||| | || Sbjct: 1064 gttctgcagcaaggacaccgctgccttatcagtgaaccaggtgaattctccatcttgtag 1005 Query: 270 cacagccatctcaacggggagcaaatcagaag---ttttcttgtccgaaatcgccttctg 326 ||||||||||||||| || |||| || || | ||| |||||| || | ||||||||| Sbjct: 1004 cacagccatctcaacaggcagcaggtctgacgaggtttgcttgtctgagagcgccttctg 945 Query: 327 cacagcaccagctttcccagccccagttaccaccatggcgacatatgcagaggagttgat 386 ||| || | || || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct: 944 caccgctgccgcctttccagctccagtcaccaccatcgcaacgtatgcggatgagttgat 885 Query: 387 caccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaagatgtgggt 446 || || ||||||||||| ||||||| ||| || ||||||||||| ||| |||| || Sbjct: 884 tactggaaacgtgaatgtaattctctctggaggtggctttggagaatccttaatgtatgt 825 Query: 447 gacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcgatgtgacc 506 ||||||| ||| ||||| |||||||| || ||||| ||||||||||| || ||||| || Sbjct: 824 gacccacctctctttctcgttaacaagagggtggccagggaagagagacgcaatgtggcc 765 Query: 507 gtcagggcccatgccaagaagctgcagatcgaacctgggaaacccagttgtttttgacat 566 ||||| ||||| || |||||||| ||||| ||||||||||| ||||| | |||||| Sbjct: 764 atcaggtcccattcccagaagctggagatcaaacctgggaaatccagtcgccgctgacat 705 Query: 567 tgcaaggacaccattcttaacaagttgcttcaagatggtttcatagtcctctgctgctcc 626 | || ||||| ||||| ||||| ||||||| | | ||| ||||| ||||| ||||| Sbjct: 704 agaaatcacaccgttcttgacaagctgcttcaggcacgcttcgtagtcgtctgccgctcc 645 Query: 627 ttcagcagataaggcatcattgatagcatacacttgaccagtaggaattggtaccttgg 685 |||||| || || ||||| || |||||||| ||||| |||| |||||| || ||||||| Sbjct: 644 ttcagctgacaacgcatcgtttatagcataaacttgtccaggaggaatcggcaccttgg 586
>gb|BT018177.1| Zea mays clone EL01N0557F01.c mRNA sequence Length = 1291 Score = 176 bits (89), Expect = 6e-41 Identities = 382/479 (79%), Gaps = 3/479 (0%) Strand = Plus / Minus Query: 210 gttctgcagcatcgacaccgcctccttgtcggtgaaccaggtgaattctccatcgtcaag 269 ||||||||||| |||||||| |||| || ||||||||||||||||||||||| | || Sbjct: 995 gttctgcagcaaggacaccgctgccttatcagtgaaccaggtgaattctccatcttgtag 936 Query: 270 cacagccatctcaacggggagcaaatcagaag---ttttcttgtccgaaatcgccttctg 326 ||||||||||||||| || |||| || || | ||| |||||| || | ||||||||| Sbjct: 935 cacagccatctcaacaggcagcaggtctgacgaggtttgcttgtctgagagcgccttctg 876 Query: 327 cacagcaccagctttcccagccccagttaccaccatggcgacatatgcagaggagttgat 386 ||| || | || || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct: 875 caccgctgccgcctttccagctccagtcaccaccatcgcaacgtatgcggatgagttgat 816 Query: 387 caccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaagatgtgggt 446 || || ||||||||||| ||||||| ||| || ||||||||||| ||| |||| || Sbjct: 815 tactggaaacgtgaatgtaattctctctggaggtggctttggagaatccttaatgtatgt 756 Query: 447 gacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcgatgtgacc 506 ||||||| ||| ||||| |||||||| || ||| | ||||||||||| || ||||| || Sbjct: 755 gacccacctctctttctcgttaacaagagggtggtcagggaagagagacgcaatgtggcc 696 Query: 507 gtcagggcccatgccaagaagctgcagatcgaacctgggaaacccagttgtttttgacat 566 ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| | |||||| Sbjct: 695 atcaggtcccattcccagaagctggagatcaaacctaggaaatccagtcgccgctgacat 636 Query: 567 tgcaaggacaccattcttaacaagttgcttcaagatggtttcatagtcctctgctgctcc 626 | || ||||| ||||| ||||| ||||||| | | ||| ||||| ||||| ||||| Sbjct: 635 agaaatcacaccgttcttgacaagctgcttcaggcacgcttcgtagtcgtctgccgctcc 576 Query: 627 ttcagcagataaggcatcattgatagcatacacttgaccagtaggaattggtaccttgg 685 |||||| || || |||||||| || ||||| ||||| |||| |||||| || ||||||| Sbjct: 575 ttcagctgacaacgcatcatttatggcataaacttgtccaggaggaatcggcaccttgg 517
>ref|NM_122350.2| Arabidopsis thaliana 6-phosphogluconolactonase AT5G24420 mRNA, complete cds Length = 1177 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaag 438 |||||||| ||||| || |||||||||||||||| |||||| || ||||||||||| | Sbjct: 691 gagttgatgaccggtaaagtgaatgtgattctctttggtggtggttttggagagtcggtg 632 Query: 439 atgtgggtgacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcg 498 |||| |||||||| |||| ||||| || | |||||||| |||||||||||| || Sbjct: 631 atgtaagtgacccatttctgcttctcattgatctgtggatggtttgggaagagagacgcc 572 Query: 499 atgtgaccgtcagggcccatgccaagaagctgcagatc 536 ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 571 atgtggccatcaggacccatccctagaagttgtagatc 534
>gb|AY052737.1| Arabidopsis thaliana AT5g24420/K16H17_13 mRNA, complete cds Length = 759 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaag 438 |||||||| ||||| || |||||||||||||||| |||||| || ||||||||||| | Sbjct: 602 gagttgatgaccggtaaagtgaatgtgattctctttggtggtggttttggagagtcggtg 543 Query: 439 atgtgggtgacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcg 498 |||| |||||||| |||| ||||| || | |||||||| |||||||||||| || Sbjct: 542 atgtaagtgacccatttctgcttctcattgatctgtggatggtttgggaagagagacgcc 483 Query: 499 atgtgaccgtcagggcccatgccaagaagctgcagatc 536 ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 482 atgtggccatcaggacccatccctagaagttgtagatc 445
>gb|AF378879.1|AF378879 Arabidopsis thaliana AT5g24420/K16H17_13 mRNA, complete cds Length = 1047 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaag 438 |||||||| ||||| || |||||||||||||||| |||||| || ||||||||||| | Sbjct: 691 gagttgatgaccggtaaagtgaatgtgattctctttggtggtggttttggagagtcggtg 632 Query: 439 atgtgggtgacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcg 498 |||| |||||||| |||| ||||| || | |||||||| |||||||||||| || Sbjct: 631 atgtaagtgacccatttctgcttctcattgatctgtggatggtttgggaagagagacgcc 572 Query: 499 atgtgaccgtcagggcccatgccaagaagctgcagatc 536 ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 571 atgtggccatcaggacccatccctagaagttgtagatc 534
>gb|AY182169.1| Elaeis guineensis clone opsc155 putative 6-phosphogluconolactonase mRNA, partial cds Length = 937 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Minus Query: 319 gccttctgcacagcaccagctttcccagccccagttaccaccatggcgacatatgcagag 378 ||||| ||||||||||||||||| |||| ||||| ||||||| || |||||||| || Sbjct: 686 gccttgtgcacagcaccagctttaccagatccagtgaccaccagtgcaacatatgccgat 627 Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttgg 428 |||||||| || ||||| ||||| || ||||||| ||| || |||||||| Sbjct: 626 gagttgattactgggaatgtgaaagttattctctctggcggaggctttgg 577 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 643 tcattgatagcatacacttgaccagtaggaattggtacctt 683 |||||||||||||| || ||||| | ||||||||| ||||| Sbjct: 362 tcattgatagcataaacctgaccgggaggaattgggacctt 322
>gb|AY085203.1| Arabidopsis thaliana clone 13806 mRNA, complete sequence Length = 1078 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaag 438 |||||||| ||||| || |||||||||||||||| |||||| || ||||||||||| | Sbjct: 683 gagttgatgaccggtaaagtgaatgtgattctctttggtggtggttttggagagtcggtg 624 Query: 439 atgtgggtgacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcg 498 |||| |||||||| |||| ||||| || | |||||||| |||||||||||| || Sbjct: 623 atgtaagtgacccatttctgcttctcattgatctgtggatggtttgggaagagagacgcc 564 Query: 499 atgtgaccgtcagggcccatgccaagaagctgcagatc 536 ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 563 atgtggccatcaggacccatccctagaagttgtagatc 526
>dbj|AB016884.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16H17 Length = 45529 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaag 438 |||||||| ||||| || |||||||||||||||| |||||| || ||||||||||| | Sbjct: 40470 gagttgatgaccggtaaagtgaatgtgattctctttggtggtggttttggagagtcggtg 40529 Query: 439 atgtgggtgacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcg 498 |||| |||||||| |||| ||||| || | |||||||| |||||||||||| || Sbjct: 40530 atgtaagtgacccatttctgcttctcattgatctgtggatggtttgggaagagagacgcc 40589 Query: 499 atgtgaccgtcagggcccatgccaagaagctgcagatc 536 ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 40590 atgtggccatcaggacccatccctagaagttgtagatc 40627 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 367 acatatgcagaggagttgatcaccgggaacgtgaatgtgattctct 412 |||| |||||| |||||||| |||||||||||||| |||||||||| Sbjct: 34047 acatgtgcagatgagttgatgaccgggaacgtgaaggtgattctct 34092
>emb|BX830567.1|CNS0A1E0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1051 Score = 67.9 bits (34), Expect = 4e-08 Identities = 127/158 (80%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtccaag 438 |||||||| ||||| || |||||||||||||||| |||||| || ||||||||||| Sbjct: 679 gagttgatgaccggtaaagtgaatgtgattctctttggtggtggttttggagagtcggtt 620 Query: 439 atgtgggtgacccacttcttgttctctttaacaagtggatggcctgggaagagagaggcg 498 |||| |||||||| |||| ||||| || | |||||||| |||||||||||| || Sbjct: 619 atgtaagtgacccatttctgcttctcattgatctgtggatggtttgggaagagagacgcc 560 Query: 499 atgtgaccgtcagggcccatgccaagaagctgcagatc 536 ||||| || ||||| ||||| || ||||| || ||||| Sbjct: 559 atgtggccatcaggacccatccctagaagttgtagatc 522
>ref|NM_122348.2| Arabidopsis thaliana EMB2024; 6-phosphogluconolactonase/ catalytic AT5G24400 (EMB2024) mRNA, complete cds Length = 1248 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 367 acatatgcagaggagttgatcaccgggaacgtgaatgtgattctct 412 |||| |||||| |||||||| |||||||||||||| |||||||||| Sbjct: 886 acatgtgcagatgagttgatgaccgggaacgtgaaggtgattctct 841
>emb|BX832117.1|CNS0A166 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH52ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1089 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 367 acatatgcagaggagttgatcaccgggaacgtgaatgtgattctct 412 |||| |||||| |||||||| |||||||||||||| |||||||||| Sbjct: 817 acatgtgcagatgagttgatgaccgggaacgtgaaggtgattctct 772
>emb|BX833820.1|CNS0A0L5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1116 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 367 acatatgcagaggagttgatcaccgggaacgtgaatgtgattctct 412 |||| |||||| |||||||| |||||||||||||| |||||||||| Sbjct: 810 acatgtgcagatgagttgatgaccgggaacgtgaaggtgattctct 765
>gb|AY086161.1| Arabidopsis thaliana clone 21890 mRNA, complete sequence Length = 1250 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 367 acatatgcagaggagttgatcaccgggaacgtgaatgtgattctct 412 |||| |||||| |||||||| |||||||||||||| |||||||||| Sbjct: 887 acatgtgcagatgagttgatgaccgggaacgtgaaggtgattctct 842
>gb|BT001923.1| Arabidopsis thaliana clone C105102 putative 6-phosphogluconolactonase (At5g24400) mRNA, complete cds Length = 1009 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 367 acatatgcagaggagttgatcaccgggaacgtgaatgtgattctct 412 |||| |||||| |||||||| |||||||||||||| |||||||||| Sbjct: 833 acatgtgcagatgagttgatgaccgggaacgtgaaggtgattctct 788
>gb|AY030298.1| Brassica carinata putative 6-phosphogluconolactonase (6PGL) mRNA, complete cds Length = 1072 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 473 gtggatggcctgggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgca 532 ||||||| || ||||||||||| || ||||| || ||||| ||||| || |||||||| | Sbjct: 548 gtggatgtccagggaagagagacgccatgtggccatcaggacccatccctagaagctgga 489 Query: 533 gatcgaac 540 |||||||| Sbjct: 488 gatcgaac 481 Score = 40.1 bits (20), Expect = 9.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggagagtc 434 ||||| || ||||| || ||||||||||||||| |||||| | ||||||||||| Sbjct: 642 gagttaatgaccggtaaagtgaatgtgattctcctaggtggcagttttggagagtc 587
>ref|NM_114796.2| Arabidopsis thaliana 6-phosphogluconolactonase/ catalytic AT3G49360 mRNA, complete cds Length = 1038 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Minus Query: 484 gggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgcagatcgaac 540 ||||| ||||| || ||||||||||| || ||||| || |||||||| ||||||||| Sbjct: 612 gggaatagagacgccatgtgaccgtccggtcccatacctagaagctgaagatcgaac 556
>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15 Length = 129757 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 484 gggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgcagatcgaac 540 ||||| ||||| || ||||||||||| || ||||| || |||||||| ||||||||| Sbjct: 106129 gggaatagagacgccatgtgaccgtccggtcccatacctagaagctgaagatcgaac 106185
>gb|BT024902.1| Arabidopsis thaliana At3g49360 mRNA, complete cds Length = 780 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Minus Query: 484 gggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgcagatcgaac 540 ||||| ||||| || ||||||||||| || ||||| || |||||||| ||||||||| Sbjct: 497 gggaatagagacgccatgtgaccgtccggtcccatacctagaagctgaagatcgaac 441
>gb|AC012329.5|AC012329 Arabidopsis thaliana chromosome 1 BAC T1G12 genomic sequence, complete sequence Length = 80367 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 484 gggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgcagatcgaac 540 ||||| ||||| || ||||||||||| || ||||| || |||||||| ||||||||| Sbjct: 24264 gggaatagagacgccatgtgaccgtccggtcccatacctagaagctgaagatcgaac 24320
>gb|AY084434.1| Arabidopsis thaliana clone 108207 mRNA, complete sequence Length = 1024 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Minus Query: 484 gggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgcagatcgaac 540 ||||| ||||| || ||||||||||| || ||||| || |||||||| ||||||||| Sbjct: 612 gggaatagagacgccatgtgaccgtccggtcccatacctagaagctgaagatcgaac 556
>dbj|AK117146.1| Arabidopsis thaliana At3g49360 mRNA for putative 6-phosphogluconolactonase, complete cds, clone: RAFL16-69-A12 Length = 962 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Minus Query: 484 gggaagagagaggcgatgtgaccgtcagggcccatgccaagaagctgcagatcgaac 540 ||||| ||||| || ||||||||||| || ||||| || |||||||| ||||||||| Sbjct: 549 gggaatagagacgccatgtgaccgtccggtcccatacctagaagctgaagatcgaac 493
>ref|NM_101239.2| Arabidopsis thaliana 6-phosphogluconolactonase/ catalytic AT1G13700 mRNA, complete cds Length = 1387 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcgg 422 |||||||| || || || |||||||||||||||| ||||||||| Sbjct: 678 gagttgatgacgggcaaagtgaatgtgattctctctggtggcgg 635
>gb|BT015753.1| Arabidopsis thaliana At1g13700 mRNA, complete cds Length = 807 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcgg 422 |||||||| || || || |||||||||||||||| ||||||||| Sbjct: 611 gagttgatgacgggcaaagtgaatgtgattctctctggtggcgg 568
>gb|BT014903.1| Arabidopsis thaliana At1g13700 gene, complete cds Length = 958 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcgg 422 |||||||| || || || |||||||||||||||| ||||||||| Sbjct: 682 gagttgatgacgggcaaagtgaatgtgattctctctggtggcgg 639
>emb|BX814265.1|CNS0AAV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1211 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Minus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcgg 422 |||||||| || || || |||||||||||||||| ||||||||| Sbjct: 915 gagttgatgacgggcaaagtgaatgtgattctctctggtggcgg 872
>gb|AC027656.4|F21F23 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 79054 Score = 48.1 bits (24), Expect = 0.038 Identities = 39/44 (88%) Strand = Plus / Plus Query: 379 gagttgatcaccgggaacgtgaatgtgattctctgtggtggcgg 422 |||||||| || || || |||||||||||||||| ||||||||| Sbjct: 48789 gagttgatgacgggcaaagtgaatgtgattctctctggtggcgg 48832
>gb|AC147231.2| Mus musculus BAC clone RP23-250I21 from chromosome 9, complete sequence Length = 215395 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 157 acttttattttaattaggagctt 179 ||||||||||||||||||||||| Sbjct: 87362 acttttattttaattaggagctt 87340
>gb|AC111009.5| Mus musculus BAC clone RP23-418A13 from 9, complete sequence Length = 194287 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 157 acttttattttaattaggagctt 179 ||||||||||||||||||||||| Sbjct: 21734 acttttattttaattaggagctt 21712
>gb|AY814674.1| Schistosoma japonicum SJCHGC05391 protein mRNA, complete cds Length = 820 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Minus Query: 502 tgaccgtcagggcccatgccaagaagctgcagatcgaa 539 |||||||| || ||||||||||||||| | |||||||| Sbjct: 453 tgaccgtctggacccatgccaagaagcagaagatcgaa 416
>dbj|AP002409.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-781P6, complete sequence Length = 180566 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 147 catgggactcacttttatttta 168 |||||||||||||||||||||| Sbjct: 109124 catgggactcacttttatttta 109145
>ref|XM_483640.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1416 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 319 gccttctgcacagcaccagctttcccagccccagttaccac 359 ||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 933 gccttatgcactgccccagctttcccagcaccagtgaccac 893
>gb|AC004934.1| Homo sapiens PAC clone RP5-953B5 from 7, complete sequence Length = 126253 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 612 gtcctctgctgctccttcagc 632 ||||||||||||||||||||| Sbjct: 39161 gtcctctgctgctccttcagc 39181
>emb|AL049713.20|HSDJ247C2 Human DNA sequence from clone RP1-247C2 on chromosome 11p13 Contains STSs and GSSs, complete sequence Length = 98360 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 ggctttggagagtccaagatg 441 ||||||||||||||||||||| Sbjct: 2195 ggctttggagagtccaagatg 2215
>gb|AC107939.5| Homo sapiens chromosome 11, clone RP11-48O9, complete sequence Length = 145264 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 ggctttggagagtccaagatg 441 ||||||||||||||||||||| Sbjct: 58397 ggctttggagagtccaagatg 58417
>gb|AC026693.5| Homo sapiens chromosome 5 clone CTC-261E10, complete sequence Length = 92250 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 cccagttgtttttgacattgc 569 ||||||||||||||||||||| Sbjct: 14778 cccagttgtttttgacattgc 14798
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 319 gccttctgcacagcaccagctttcccagccccagttaccac 359 ||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 27398713 gccttatgcactgccccagctttcccagcaccagtgaccac 27398673
>gb|AC091955.2| Homo sapiens chromosome 5 clone RP11-429P5, complete sequence Length = 101948 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 cccagttgtttttgacattgc 569 ||||||||||||||||||||| Sbjct: 6531 cccagttgtttttgacattgc 6511
>dbj|AK109374.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H02, full insert sequence Length = 1440 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 319 gccttctgcacagcaccagctttcccagccccagttaccac 359 ||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 1051 gccttatgcactgccccagctttcccagcaccagtgaccac 1011
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 319 gccttctgcacagcaccagctttcccagccccagttaccac 359 ||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 25508 gccttatgcactgccccagctttcccagcaccagtgaccac 25468
>dbj|AK073704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060E10, full insert sequence Length = 1417 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 319 gccttctgcacagcaccagctttcccagccccagttaccac 359 ||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 933 gccttatgcactgccccagctttcccagcaccagtgaccac 893
>gb|M24359.1|RATPKM12 Rat pyruvate kinase M1 and M2 subunit genes, complete cds Length = 11788 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 ccagctttcccagccccagtt 354 ||||||||||||||||||||| Sbjct: 1037 ccagctttcccagccccagtt 1017
>emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chromosome 4, complete sequence Length = 186686 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 ccaggatgaatgcaaccatgc 143 ||||||||||||||||||||| Sbjct: 152152 ccaggatgaatgcaaccatgc 152172
>gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, complete sequence Length = 223764 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 catgccaccatgggactcac 158 |||||||||||||||||||| Sbjct: 139151 catgccaccatgggactcac 139132
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence Length = 193076 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 acccacttcttgttctcttt 467 |||||||||||||||||||| Sbjct: 50693 acccacttcttgttctcttt 50674
>gb|AC138359.8| Mus musculus chromosome 1, clone RP24-383H12, complete sequence Length = 217891 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 acccacttcttgttctcttt 467 |||||||||||||||||||| Sbjct: 109905 acccacttcttgttctcttt 109886
>gb|AC130220.3| Mus musculus BAC clone RP23-140M6 from chromosome 6, complete sequence Length = 200785 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 atgcaaccatgccaccatgg 151 |||||||||||||||||||| Sbjct: 154596 atgcaaccatgccaccatgg 154615
>gb|BT014125.1| Lycopersicon esculentum clone 133233F, mRNA sequence Length = 1243 Score = 40.1 bits (20), Expect = 9.4 Identities = 68/84 (80%) Strand = Plus / Minus Query: 372 tgcagaggagttgatcaccgggaacgtgaatgtgattctctgtggtggcggctttggaga 431 |||||| ||||| || || ||||| || ||||| ||||| | ||||| || |||||||| Sbjct: 851 tgcagatgagtttattacagggaatgtaaatgtaattctgttcggtggaggttttggaga 792 Query: 432 gtccaagatgtgggtgacccactt 455 |||| |||| |||||||||||| Sbjct: 791 gtccttgatgaaggtgacccactt 768
>gb|AC131710.3| Mus musculus BAC clone RP23-187M22 from 15, complete sequence Length = 224591 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 tagtcctctgctgctccttcagca 633 |||||||||| ||||||||||||| Sbjct: 19849 tagtcctctgttgctccttcagca 19826
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catcgtcaagcacagccatc 279 |||||||||||||||||||| Sbjct: 23230 catcgtcaagcacagccatc 23249
>gb|AC104308.3| Homo sapiens chromosome 3 clone RP11-544F21, complete sequence Length = 174513 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 atgttatttactcctaaacacatt 70 |||| ||||||||||||||||||| Sbjct: 115784 atgtcatttactcctaaacacatt 115761
>emb|AL663044.5| Mouse DNA sequence from clone RP23-440I12 on chromosome 11 Contains part of a novel gene, complete sequence Length = 86761 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gacccaccaggatgaatgca 136 |||||||||||||||||||| Sbjct: 64699 gacccaccaggatgaatgca 64718
>dbj|AK093916.1| Homo sapiens cDNA FLJ36597 fis, clone TRACH2014442, highly similar to TRANSFORMING GROWTH FACTOR-BETA INDUCED PROTEIN IG-H3 PRECURSOR Length = 2659 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ccttctgcacagcaccagct 339 |||||||||||||||||||| Sbjct: 176 ccttctgcacagcaccagct 157
>emb|CR478352.2| Mouse DNA sequence from clone WI1-1892F9 on chromosome X, complete sequence Length = 28067 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 tagtcctctgctgctccttcagca 633 |||||||||| ||||||||||||| Sbjct: 8951 tagtcctctgttgctccttcagca 8928
>gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome 13, complete sequence Length = 194915 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gactcacttttattttaatt 171 |||||||||||||||||||| Sbjct: 54021 gactcacttttattttaatt 54002
>gb|AY074411.1| Trichosurus vulpecula clone TrvuVK57 immunoglobulin kappa light chain variable region mRNA, partial cds Length = 459 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ttaacaagtggatggcctgg 485 |||||||||||||||||||| Sbjct: 182 ttaacaagtggatggcctgg 201
>emb|BX248318.9| Zebrafish DNA sequence from clone CH211-220M17 in linkage group 11, complete sequence Length = 194209 Score = 40.1 bits (20), Expect = 9.4 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 36 cgcctcagcaaatgtt-atttactcctaaacacatt 70 |||||||||||||||| ||| ||||||||| ||||| Sbjct: 188549 cgcctcagcaaatgttaattgactcctaaatacatt 188584
>gb|AC156573.3| Mus musculus BAC clone RP23-133P6 from chromosome 15, complete sequence Length = 198278 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 tagtcctctgctgctccttcagca 633 |||||||||| ||||||||||||| Sbjct: 144090 tagtcctctgttgctccttcagca 144067
>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete sequence Length = 237318 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 ggactcacttttattttaattagg 174 |||||||||||| ||||||||||| Sbjct: 207178 ggactcactttttttttaattagg 207155 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,844,112 Number of Sequences: 3902068 Number of extensions: 6844112 Number of successful extensions: 133111 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 132927 Number of HSP's gapped (non-prelim): 174 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)