ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GI1L2_ARATH (Q9LYC1) Probable gibberellin receptor GID1L2 (EC 3.... 59 1e-08
2GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.... 54 5e-07
3GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.... 53 8e-07
4GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-) (Gibb... 51 3e-06
5LIP2_MORS1 (P24484) Lipase 2 (EC 3.1.1.3) (Triacylglycerol lipase) 32 1.5
6SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-su... 30 5.8
7LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related prot... 30 9.8
8MEC4_CAEEL (P24612) Degenerin mec-4 (Mechanosensory abnormality ... 30 9.8
9MEC4_CAEBR (Q17298) Degenerin mec-4 (Mechanosensory protein 4) 30 9.8
10YNG5_SCHPO (O13621) Hypothetical protein C691.05c in chromosome II 30 9.8

>GI1L2_ARATH (Q9LYC1) Probable gibberellin receptor GID1L2 (EC 3.-.-.-)|
           (GID1-like protein 2)
          Length = 358

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
 Frame = -1

Query: 686 EPVKVVAQVLMYPFFIGSVPTHSEIRLANSYFYDKSTCLLAWRLLLSEKEFSLDHPAANP 507
           E VKV+  +L++P F G   T SE  L   YF         WR  L E E   DHPA NP
Sbjct: 207 EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGE-DRDHPACNP 265

Query: 506 LAPGRGGPPLKCM--PPTLTIVAEHDCMRDRAIAYSEELRKVNVDAPVLDYKDTVHEF 339
             P   G  LK +  P +L +VA  D ++D  +AY + L+K  ++  +L  K     F
Sbjct: 266 FGP--RGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGF 321



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>GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.-.-.-)|
           (GID1-like protein 1)
          Length = 345

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 33/105 (31%), Positives = 50/105 (47%)
 Frame = -1

Query: 680 VKVVAQVLMYPFFIGSVPTHSEIRLANSYFYDKSTCLLAWRLLLSEKEFSLDHPAANPLA 501
           + V+  +L+ P F G+  T SE  L   YF         W+  L E E   +HPA NP +
Sbjct: 209 IDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGE-DREHPACNPFS 267

Query: 500 PGRGGPPLKCMPPTLTIVAEHDCMRDRAIAYSEELRKVNVDAPVL 366
           P          P +L +VA  D +RD  +AY+E L+K   +  ++
Sbjct: 268 PRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLM 312



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>GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.-.-.-)|
           (GID1-like protein 3)
          Length = 344

 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 37/119 (31%), Positives = 54/119 (45%)
 Frame = -1

Query: 722 VTXKAVEDAKQFEPVKVVAQVLMYPFFIGSVPTHSEIRLANSYFYDKSTCLLAWRLLLSE 543
           V  +AVE       + V+  +L+ P F G+  T SE RL   YF         WR  L E
Sbjct: 198 VAVRAVESR-----IDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPE 252

Query: 542 KEFSLDHPAANPLAPGRGGPPLKCMPPTLTIVAEHDCMRDRAIAYSEELRKVNVDAPVL 366
            E   +HPA +P  P          P +L +VA  D ++D  + Y+E L+K   +  +L
Sbjct: 253 GE-DREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLL 310



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>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)|
           (Gibberellin-insensitive dwarf protein 1) (Protein
           GIBBERELLIN INSENSITIVE DWARF1)
          Length = 354

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 39/102 (38%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = -1

Query: 686 EPVKVVAQVLMYPFFIGSVPTHSEIRLANSYFYDKSTCLLAWRLLLSEKEFSLDHPAANP 507
           E VKV   +L+   F G+  T SE RL   YF         W+  L E +   DHPA NP
Sbjct: 214 EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPE-DADRDHPACNP 272

Query: 506 LAP-GR--GGPPLKCMPPTLTIVAEHDCMRDRAIAYSEELRK 390
             P GR  GG P      +L IV+  D   DR +AY++ LR+
Sbjct: 273 FGPNGRRLGGLP---FAKSLIIVSGLDLTCDRQLAYADALRE 311



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>LIP2_MORS1 (P24484) Lipase 2 (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 433

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -1

Query: 521 PAANPLAPGRGGPPLKCMPPTLTIVAEHDCMRDRAIAYSEELRKVNVDAPVLDYKDTVHE 342
           P ++PL     G   + + P+  +VAE D +RD  +AY+E L+K  V           H 
Sbjct: 334 PQSHPLISVMHGDNTQ-LCPSYIVVAELDILRDEGLAYAELLQKEGVQVQTYTVLGAPHG 392

Query: 341 FATL 330
           F  L
Sbjct: 393 FINL 396



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>SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 640

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +2

Query: 320 GTHQVLRTHGPYLCSQGLAHPHLPCGVPQSKQLLYPSYSRVPQRLSRLGACISVVGLLCQ 499
           G  +V  +    L S+   HP  P  VPQ    L PS +  P   + LG C+S  G  C 
Sbjct: 578 GAREVASSPVSALPSRFCPHPTSP-SVPQPGPTLPPSLTAPPPAYATLGPCLSQSGSAC- 635

Query: 500 GPG 508
            PG
Sbjct: 636 APG 638



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>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor|
            (LRP)
          Length = 4753

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 672  CSSGFDVSLLHRKCSNTLGNKACKLILL*QIHMLTCLEITFI 547
            CS G+D +  H  C++T G K C    L Q   L C+   FI
Sbjct: 2986 CSDGWDET--HTNCTDTAGKKICVGDYLFQCDNLKCISRAFI 3025



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>MEC4_CAEEL (P24612) Degenerin mec-4 (Mechanosensory abnormality protein 4)|
          Length = 768

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LVPSQGYVFLHPYGNIFGTGLGLWCLEEHIKCCELM 347
           L  S+ Y F++   + FG  LGLWC    + CCE +
Sbjct: 700 LTESEAYGFVNLLAD-FGGQLGLWCGISFLTCCEFV 734



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>MEC4_CAEBR (Q17298) Degenerin mec-4 (Mechanosensory protein 4)|
          Length = 768

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LVPSQGYVFLHPYGNIFGTGLGLWCLEEHIKCCELM 347
           L  S+ Y F++   + FG  LGLWC    + CCE +
Sbjct: 700 LTESEAYGFVNLLAD-FGGQLGLWCGISFLTCCEFV 734



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>YNG5_SCHPO (O13621) Hypothetical protein C691.05c in chromosome II|
          Length = 668

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 255 GYVFLHPYGNIFGTGLGLW 311
           GY FL PY  IF  G+ LW
Sbjct: 202 GYYFLRPYSYIFAIGVALW 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,561,129
Number of Sequences: 219361
Number of extensions: 2585580
Number of successful extensions: 6727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6722
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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