ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190322.1| Oryza sativa (japonica cultivar-group), predic... 462 e-127
2dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic D... 462 e-127
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 462 e-127
4dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic D... 462 e-127
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
6dbj|AK100022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 5e-20
8emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 107 5e-20
9ref|NM_121435.1| Arabidopsis thaliana unknown protein AT5G14310 ... 82 3e-12
10gb|BT000439.1| Arabidopsis thaliana putative protein (At5g14310)... 82 3e-12
11emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, B... 82 3e-12
12emb|BX832618.1|CNS0A1LV Arabidopsis thaliana Full-length cDNA Co... 82 3e-12
13gb|AY085477.1| Arabidopsis thaliana clone 153235 mRNA, complete ... 82 3e-12
14gb|BT001209.1| Arabidopsis thaliana putative protein (At5g14310)... 82 3e-12
15emb|BX831911.1|CNS09ZK6 Arabidopsis thaliana Full-length cDNA Co... 74 7e-10
16emb|BX833845.1|CNS09Z64 Arabidopsis thaliana Full-length cDNA Co... 74 7e-10
17gb|AY722924.2| Borrelia garinii PBi variable plasmid segment G1M... 42 2.5
18gb|AY722919.2| Borrelia garinii PBi variable plasmid segment G1M... 42 2.5
19gb|AC007224.5| Homo sapiens chromosome 16 clone RP11-475D10, com... 42 2.5
20dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.5
21gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 9.9
22gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.9
23gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, comple... 40 9.9
24gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete seq... 40 9.9
25emb|AL772411.1| Human DNA sequence from clone RP11-180N18 on chr... 40 9.9
26emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on ch... 40 9.9
27emb|AL023581.1|HS45I4 Human DNA sequence from clone RP1-45I4 on ... 40 9.9
28emb|BX537738.1|HSM805819 Homo sapiens genomic DNA; cDNA DKFZp686... 40 9.9
29gb|AC116316.4| Homo sapiens BAC clone RP11-1258N14 from 4, compl... 40 9.9
30gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete se... 40 9.9
31emb|CR593192.1| full-length cDNA clone CS0DK004YH21 of HeLa cell... 40 9.9
32dbj|AK136543.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 9.9
33gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, co... 40 9.9
34gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Canc... 40 9.9
35gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, comp... 40 9.9
36dbj|AK037727.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 9.9
37gb|AC005519.3|AC005519 Homo sapiens PAC clone RP5-919J22 from 14... 40 9.9
38ref|NM_172550.3| Mus musculus RIKEN cDNA A130042E20 gene (A13004... 40 9.9
39gb|BC057308.1| Mus musculus RIKEN cDNA A130042E20 gene, mRNA (cD... 40 9.9
40dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.9 
>ref|NM_190322.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1233

 Score =  462 bits (233), Expect = e-127
 Identities = 416/477 (87%)
 Strand = Plus / Minus

                                                                        
Query: 228  ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 287
            |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 1233 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 1174

                                                                        
Query: 288  ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 347
             |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 1173 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 1114

                                                                        
Query: 348  gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 407
             || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 1113 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 1054

                                                                        
Query: 408  gtaagcaattgctctatccctcatacagtcgtgttccgcaacgattgtcaaggttggggg 467
            ||| |||||||||| ||||||||| ||||| |||||||| | || ||||||||| || ||
Sbjct: 1053 gtatgcaattgctcgatccctcatccagtcatgttccgcgatgactgtcaaggtcggagg 994

                                                                        
Query: 468  catgcatttcagtggtgggcctcctctgccaggggccagggggttggcagcaggatggtc 527
            ||| |||||||||||||| ||||||||  |||| |||||||| || ||||||||||| ||
Sbjct: 993  catacatttcagtggtggccctcctctatcaggagccaggggattcgcagcaggatgatc 934

                                                                        
Query: 528  caagctgaactctttctctgataaaagtaatctccaggcaagtaagcatgtggatttgtc 587
            || |||||| || |||||||| |||| ||||||||| |||||||  |||||||| |||||
Sbjct: 933  caggctgaattccttctctgacaaaaataatctccaagcaagtatacatgtggacttgtc 874

                                                                        
Query: 588  atagaagtatgagtttgcaagccttatttccgagtgtgttggaacacttcctatgaagaa 647
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 873  atagaagtatgagttcgcaagccttatttccgagtgtgttggaacgcttcctatgaagaa 814

                                                                     
Query: 648  gggatacatcaaaacctgagctacaacctttactggctcaaattgctttgcatcttc 704
             || ||||||| |||||| || |||||||| |  || |||||| ||||| |||||||
Sbjct: 813  tgggtacatcagaacctgtgcaacaaccttgatagggtcaaatagctttccatcttc 757
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>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1065G12
          Length = 165006

 Score =  462 bits (233), Expect = e-127
 Identities = 416/477 (87%)
 Strand = Plus / Plus

                                                                         
Query: 228   ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 287
             |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 92243 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 92302

                                                                         
Query: 288   ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 347
              |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 92303 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 92362

                                                                         
Query: 348   gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 407
              || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 92363 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 92422

                                                                         
Query: 408   gtaagcaattgctctatccctcatacagtcgtgttccgcaacgattgtcaaggttggggg 467
             ||| |||||||||| ||||||||| ||||| |||||||| | || ||||||||| || ||
Sbjct: 92423 gtatgcaattgctcgatccctcatccagtcatgttccgcgatgactgtcaaggtcggagg 92482

                                                                         
Query: 468   catgcatttcagtggtgggcctcctctgccaggggccagggggttggcagcaggatggtc 527
             ||| |||||||||||||| ||||||||  |||| |||||||| || ||||||||||| ||
Sbjct: 92483 catacatttcagtggtggccctcctctatcaggagccaggggattcgcagcaggatgatc 92542

                                                                         
Query: 528   caagctgaactctttctctgataaaagtaatctccaggcaagtaagcatgtggatttgtc 587
             || |||||| || |||||||| |||| ||||||||| |||||||  |||||||| |||||
Sbjct: 92543 caggctgaattccttctctgacaaaaataatctccaagcaagtatacatgtggacttgtc 92602

                                                                         
Query: 588   atagaagtatgagtttgcaagccttatttccgagtgtgttggaacacttcctatgaagaa 647
             ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 92603 atagaagtatgagttcgcaagccttatttccgagtgtgttggaacgcttcctatgaagaa 92662

                                                                      
Query: 648   gggatacatcaaaacctgagctacaacctttactggctcaaattgctttgcatcttc 704
              || ||||||| |||||| || |||||||| |  || |||||| ||||| |||||||
Sbjct: 92663 tgggtacatcagaacctgtgcaacaaccttgatagggtcaaatagctttccatcttc 92719



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 40/41 (97%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                      
Query: 24    atcgtctttgagtt-agtctacaatttgcacactacattct 63
             |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92032 atcgtctttgagttcagtctacaatttgcacactacattct 92072



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   ctcccatcaccaggtgaaaaagaa 172
             ||||||| ||||||||||||||||
Sbjct: 92162 ctcccattaccaggtgaaaaagaa 92185
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  462 bits (233), Expect = e-127
 Identities = 416/477 (87%)
 Strand = Plus / Plus

                                                                            
Query: 228      ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 287
                |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 39290537 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 39290596

                                                                            
Query: 288      ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 347
                 |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 39290597 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 39290656

                                                                            
Query: 348      gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 407
                 || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 39290657 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 39290716

                                                                            
Query: 408      gtaagcaattgctctatccctcatacagtcgtgttccgcaacgattgtcaaggttggggg 467
                ||| |||||||||| ||||||||| ||||| |||||||| | || ||||||||| || ||
Sbjct: 39290717 gtatgcaattgctcgatccctcatccagtcatgttccgcgatgactgtcaaggtcggagg 39290776

                                                                            
Query: 468      catgcatttcagtggtgggcctcctctgccaggggccagggggttggcagcaggatggtc 527
                ||| |||||||||||||| ||||||||  |||| |||||||| || ||||||||||| ||
Sbjct: 39290777 catacatttcagtggtggccctcctctatcaggagccaggggattcgcagcaggatgatc 39290836

                                                                            
Query: 528      caagctgaactctttctctgataaaagtaatctccaggcaagtaagcatgtggatttgtc 587
                || |||||| || |||||||| |||| ||||||||| |||||||  |||||||| |||||
Sbjct: 39290837 caggctgaattccttctctgacaaaaataatctccaagcaagtatacatgtggacttgtc 39290896

                                                                            
Query: 588      atagaagtatgagtttgcaagccttatttccgagtgtgttggaacacttcctatgaagaa 647
                ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 39290897 atagaagtatgagttcgcaagccttatttccgagtgtgttggaacgcttcctatgaagaa 39290956

                                                                         
Query: 648      gggatacatcaaaacctgagctacaacctttactggctcaaattgctttgcatcttc 704
                 || ||||||| |||||| || |||||||| |  || |||||| ||||| |||||||
Sbjct: 39290957 tgggtacatcagaacctgtgcaacaaccttgatagggtcaaatagctttccatcttc 39291013



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 40/41 (97%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                         
Query: 24       atcgtctttgagtt-agtctacaatttgcacactacattct 63
                |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 39290326 atcgtctttgagttcagtctacaatttgcacactacattct 39290366



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 149      ctcccatcaccaggtgaaaaagaa 172
                ||||||| ||||||||||||||||
Sbjct: 39290456 ctcccattaccaggtgaaaaagaa 39290479
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>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551C06
          Length = 149829

 Score =  462 bits (233), Expect = e-127
 Identities = 416/477 (87%)
 Strand = Plus / Plus

                                                                         
Query: 228   ctaatacgagaactcgtgccctctcagggatatgtatttcttcatccatatggcaatatc 287
             |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||
Sbjct: 71783 ctaatacgagaactcgtgtcctcggagggatatgtatttcttcatccatatggcgatgtc 71842

                                                                         
Query: 288   ttcggcacaggcctgggcctgtggtgtcttgaggaacacatcaagtgttgcgaactcatg 347
              |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 71843 ctcggcacaggcctgggcctgcggtgtcttgaggaaaacatcgagggttgcaaactcatg 71902

                                                                         
Query: 348   gaccgtatctttgtagtcaaggactggcgcatccacatttaccttgcggagttcctcaga 407
              || ||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 71903 aactgtatccttgtaatcaagaacaggtgcatcgacattcaccttgcggagctcctccga 71962

                                                                         
Query: 408   gtaagcaattgctctatccctcatacagtcgtgttccgcaacgattgtcaaggttggggg 467
             ||| |||||||||| ||||||||| ||||| |||||||| | || ||||||||| || ||
Sbjct: 71963 gtatgcaattgctcgatccctcatccagtcatgttccgcgatgactgtcaaggtcggagg 72022

                                                                         
Query: 468   catgcatttcagtggtgggcctcctctgccaggggccagggggttggcagcaggatggtc 527
             ||| |||||||||||||| ||||||||  |||| |||||||| || ||||||||||| ||
Sbjct: 72023 catacatttcagtggtggccctcctctatcaggagccaggggattcgcagcaggatgatc 72082

                                                                         
Query: 528   caagctgaactctttctctgataaaagtaatctccaggcaagtaagcatgtggatttgtc 587
             || |||||| || |||||||| |||| ||||||||| |||||||  |||||||| |||||
Sbjct: 72083 caggctgaattccttctctgacaaaaataatctccaagcaagtatacatgtggacttgtc 72142

                                                                         
Query: 588   atagaagtatgagtttgcaagccttatttccgagtgtgttggaacacttcctatgaagaa 647
             ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 72143 atagaagtatgagttcgcaagccttatttccgagtgtgttggaacgcttcctatgaagaa 72202

                                                                      
Query: 648   gggatacatcaaaacctgagctacaacctttactggctcaaattgctttgcatcttc 704
              || ||||||| |||||| || |||||||| |  || |||||| ||||| |||||||
Sbjct: 72203 tgggtacatcagaacctgtgcaacaaccttgatagggtcaaatagctttccatcttc 72259



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 40/41 (97%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                      
Query: 24    atcgtctttgagtt-agtctacaatttgcacactacattct 63
             |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 71572 atcgtctttgagttcagtctacaatttgcacactacattct 71612



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   ctcccatcaccaggtgaaaaagaa 172
             ||||||| ||||||||||||||||
Sbjct: 71702 ctcccattaccaggtgaaaaagaa 71725
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 5e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 256     gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 315
               |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 8795689 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 8795630

                                                                           
Query: 316     ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 375
               || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 8795629 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 8795570

                                                     
Query: 376     gcatccacatttaccttgcggagttcctcagagtaagc 413
               ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 8795569 gcatccacatttaccttgcggagctcctccgagtaagc 8795532



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                           
Query: 560     tccaggcaagtaagcatgtggatttgtcatagaagtatgagtttgcaagccttatttccg 619
               ||||||| |||||||| || || ||||||||||| || |||||||| ||| | | |||||
Sbjct: 8795388 tccaggccagtaagcacgttgacttgtcatagaaataggagtttgccagcttcagttccg 8795329

                                                                         
Query: 620     agtgtgttggaacacttcctatgaagaagggatacatcaaaacctgagctacaacctt 677
               | || || |||  | | || ||||| || |||||||||||||||||||| || |||||
Sbjct: 8795328 attgcgtgggactagtccccatgaaaaatggatacatcaaaacctgagcgacgacctt 8795271
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>dbj|AK100022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145I21, full
            insert sequence
          Length = 1965

 Score =  107 bits (54), Expect = 5e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                        
Query: 256  gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 315
            |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 1403 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 1344

                                                                        
Query: 316  ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 375
            || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 1343 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 1284

                                                  
Query: 376  gcatccacatttaccttgcggagttcctcagagtaagc 413
            ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1283 gcatccacatttaccttgcggagctcctccgagtaagc 1246



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 560  tccaggcaagtaagcatgtggatttgtcatagaagtatgagtttgcaagccttatttccg 619
            ||||||| |||||||| || || ||||||||||| || |||||||| ||| | | |||||
Sbjct: 1102 tccaggccagtaagcacgttgacttgtcatagaaataggagtttgccagcttcagttccg 1043

                                                                      
Query: 620  agtgtgttggaacacttcctatgaagaagggatacatcaaaacctgagctacaacctt 677
            | || || |||  | | || ||||| || |||||||||||||||||||| || |||||
Sbjct: 1042 attgcgtgggactagtccccatgaaaaatggatacatcaaaacctgagcgacgacctt 985
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 5e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 256     gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 315
               |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 8795572 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 8795513

                                                                           
Query: 316     ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 375
               || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 8795512 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 8795453

                                                     
Query: 376     gcatccacatttaccttgcggagttcctcagagtaagc 413
               ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 8795452 gcatccacatttaccttgcggagctcctccgagtaagc 8795415



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                           
Query: 560     tccaggcaagtaagcatgtggatttgtcatagaagtatgagtttgcaagccttatttccg 619
               ||||||| |||||||| || || ||||||||||| || |||||||| ||| | | |||||
Sbjct: 8795271 tccaggccagtaagcacgttgacttgtcatagaaataggagtttgccagcttcagttccg 8795212

                                                                         
Query: 620     agtgtgttggaacacttcctatgaagaagggatacatcaaaacctgagctacaacctt 677
               | || || |||  | | || ||||| || |||||||||||||||||||| || |||||
Sbjct: 8795211 attgcgtgggactagtccccatgaaaaatggatacatcaaaacctgagcgacgacctt 8795154
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>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 195500

 Score =  107 bits (54), Expect = 5e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                         
Query: 256   gatatgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtc 315
             |||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| ||||||| 
Sbjct: 46480 gatatgtacttcttaacccagatggctatatcttcggcgcaagcctgagccagtggtgtt 46539

                                                                         
Query: 316   ttgaggaacacatcaagtgttgcgaactcatggaccgtatctttgtagtcaaggactggc 375
             || || || || || || || |||||||||||||||| ||| ||||| || || || || 
Sbjct: 46540 ttcagcaagacgtccagcgtggcgaactcatggaccgcatccttgtactcgagaacaggg 46599

                                                   
Query: 376   gcatccacatttaccttgcggagttcctcagagtaagc 413
             ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 46600 gcatccacatttaccttgcggagctcctccgagtaagc 46637



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Plus

                                                                         
Query: 560   tccaggcaagtaagcatgtggatttgtcatagaagtatgagtttgcaagccttatttccg 619
             ||||||| |||||||| || || ||||||||||| || |||||||| ||| | | |||||
Sbjct: 46781 tccaggccagtaagcacgttgacttgtcatagaaataggagtttgccagcttcagttccg 46840

                                                                       
Query: 620   agtgtgttggaacacttcctatgaagaagggatacatcaaaacctgagctacaacctt 677
             | || || |||  | | || ||||| || |||||||||||||||||||| || |||||
Sbjct: 46841 attgcgtgggactagtccccatgaaaaatggatacatcaaaacctgagcgacgacctt 46898
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>ref|NM_121435.1| Arabidopsis thaliana unknown protein AT5G14310 mRNA, complete cds
          Length = 1808

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 259  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1584 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1525

                                         
Query: 319  aggaacacatcaagtgttgcgaactcatg 347
            || | || ||||||||| || ||||||||
Sbjct: 1524 agaagcatatcaagtgtagcaaactcatg 1496
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>gb|BT000439.1| Arabidopsis thaliana putative protein (At5g14310) mRNA, complete cds
          Length = 1736

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 259  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1577 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1518

                                         
Query: 319  aggaacacatcaagtgttgcgaactcatg 347
            || | || ||||||||| || ||||||||
Sbjct: 1517 agaagcatatcaagtgtagcaaactcatg 1489
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>emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project)
          Length = 100269

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                         
Query: 259   atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
             ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 36141 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 36082

                                          
Query: 319   aggaacacatcaagtgttgcgaactcatg 347
             || | || ||||||||| || ||||||||
Sbjct: 36081 agaagcatatcaagtgtagcaaactcatg 36053
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>emb|BX832618.1|CNS0A1LV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH85ZA10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1899

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 259  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1585 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1526

                                         
Query: 319  aggaacacatcaagtgttgcgaactcatg 347
            || | || ||||||||| || ||||||||
Sbjct: 1525 agaagcatatcaagtgtagcaaactcatg 1497



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 589  tagaagtatgagtttgcaagccttatttccgagtgtgttgg 629
            |||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 1255 tagaagtaagagtttgccagccttatttcggactgtgttgg 1215
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>gb|AY085477.1| Arabidopsis thaliana clone 153235 mRNA, complete sequence
          Length = 1809

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 259  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1582 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1523

                                         
Query: 319  aggaacacatcaagtgttgcgaactcatg 347
            || | || ||||||||| || ||||||||
Sbjct: 1522 agaagcatatcaagtgtagcaaactcatg 1494
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>gb|BT001209.1| Arabidopsis thaliana putative protein (At5g14310) mRNA, complete cds
          Length = 1409

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 259  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
            ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 1310 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 1251

                                         
Query: 319  aggaacacatcaagtgttgcgaactcatg 347
            || | || ||||||||| || ||||||||
Sbjct: 1250 agaagcatatcaagtgtagcaaactcatg 1222
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>emb|BX831911.1|CNS09ZK6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH39ZB07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1738

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
            ||||||||||| | ||| ||||||||||||||||| ||||||||  |||| || ||||||
Sbjct: 1554 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtacctgaggagtcttg 1495

                                         
Query: 319  aggaacacatcaagtgttgcgaactcatg 347
            || | || ||||||||| || ||||||||
Sbjct: 1494 agaagcatatcaagtgtagcaaactcatg 1466
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>emb|BX833845.1|CNS09Z64 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL7ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 881

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 259 atgtatttcttcatccatatggcaatatcttcggcacaggcctgggcctgtggtgtcttg 318
           ||||||||||| | ||| ||||||||||||||||| |||||||| ||||| || ||||||
Sbjct: 673 atgtatttcttgacccaaatggcaatatcttcggcgcaggcctgtgcctgaggagtcttg 614

                                        
Query: 319 aggaacacatcaagtgttgcgaactcatg 347
           || | || || |||||| || ||||||||
Sbjct: 613 agaagcatatgaagtgtagcaaactcatg 585
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>gb|AY722924.2| Borrelia garinii PBi variable plasmid segment G1M1b07c12.s1, WORKING
            DRAFT SEQUENCE
          Length = 11868

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 205  acaacactgatcttttgctac 225
            |||||||||||||||||||||
Sbjct: 7324 acaacactgatcttttgctac 7344
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>gb|AY722919.2| Borrelia garinii PBi variable plasmid segment G1M1b13a11.r1, WORKING
             DRAFT SEQUENCE
          Length = 16203

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   acaacactgatcttttgctac 225
             |||||||||||||||||||||
Sbjct: 12267 acaacactgatcttttgctac 12287
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>gb|AC007224.5| Homo sapiens chromosome 16 clone RP11-475D10, complete sequence
          Length = 185327

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 527   ccaagctgaactctttctctg 547
             |||||||||||||||||||||
Sbjct: 76910 ccaagctgaactctttctctg 76930
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>dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-861E23, complete
              sequence
          Length = 181946

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 456    caaggttgggggcatgcattt 476
              |||||||||||||||||||||
Sbjct: 151038 caaggttgggggcatgcattt 151058
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     aactggttcctcgccttttt 136
               ||||||||||||||||||||
Sbjct: 1547019 aactggttcctcgccttttt 1547038
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tcaccaggtgaaaaagaatg 174
              ||||||||||||||||||||
Sbjct: 946812 tcaccaggtgaaaaagaatg 946793
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>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence
          Length = 145709

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    ggcctgggcctgtggtgtct 316
              ||||||||||||||||||||
Sbjct: 107808 ggcctgggcctgtggtgtct 107789
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>gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete sequence
          Length = 115134

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ctctatttcacaacactgat 215
             ||||||||||||||||||||
Sbjct: 36573 ctctatttcacaacactgat 36592
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>emb|AL772411.1| Human DNA sequence from clone RP11-180N18 on chromosome 1 Contains the
             AHCYL1 S-adenosylhomocysteine hydrolase-like 1 and the 5'
             end of gene KIAA1761 (FLJ14743), complete sequence
          Length = 81378

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   atgtggatttgtcatagaag 594
             ||||||||||||||||||||
Sbjct: 53982 atgtggatttgtcatagaag 53963
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>emb|AL607026.11| Human DNA sequence from clone RP11-498G22 on chromosome 10, complete
              sequence
          Length = 172911

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    catcaccaggtgaaaaagaa 172
              ||||||||||||||||||||
Sbjct: 100735 catcaccaggtgaaaaagaa 100716
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>emb|AL023581.1|HS45I4 Human DNA sequence from clone RP1-45I4 on chromosome 6q24.1-24.3 Contains
              part of a novel gene (FLJ32928), two novel genes, and the
              5' end of the gene for androgen induced protein (AIG-1,
              CGI-103) (includes FLJ10485). Contains a CpG island,
              complete sequence
          Length = 137947

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    gctctatccctcatacagtc 437
              ||||||||||||||||||||
Sbjct: 100838 gctctatccctcatacagtc 100819
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>emb|BX537738.1|HSM805819 Homo sapiens genomic DNA; cDNA DKFZp686G1788 (from clone
            DKFZp686G1788)
          Length = 7856

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  gcagcgcctcccatcaccag 161
            ||||||||||||||||||||
Sbjct: 2538 gcagcgcctcccatcaccag 2557
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>gb|AC116316.4| Homo sapiens BAC clone RP11-1258N14 from 4, complete sequence
          Length = 130364

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   gggcctcctctgccaggggc 503
             ||||||||||||||||||||
Sbjct: 51374 gggcctcctctgccaggggc 51393
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>gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete sequence
          Length = 121112

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ctctatttcacaacactgat 215
             ||||||||||||||||||||
Sbjct: 45013 ctctatttcacaacactgat 45032
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>emb|CR593192.1| full-length cDNA clone CS0DK004YH21 of HeLa cells Cot 25-normalized
            of Homo sapiens (human)
          Length = 2336

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 485  ggcctcctctgccaggggccaggg 508
            ||||||||||||||| ||||||||
Sbjct: 1762 ggcctcctctgccagcggccaggg 1785
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>dbj|AK136543.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
            library, clone:9130204L09 product:hypothetical protein,
            full insert sequence
          Length = 2654

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  ctaactggttcctcgccttt 134
            ||||||||||||||||||||
Sbjct: 2106 ctaactggttcctcgccttt 2125
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>gb|AC007937.18| Mus musculus chromosome 10, clone RP21-536F4, complete sequence
          Length = 205015

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    ctaactggttcctcgccttt 134
              ||||||||||||||||||||
Sbjct: 143478 ctaactggttcctcgccttt 143497
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>gb|AC158618.5| Mus musculus 10 BAC RP23-280M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 235639

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    ctaactggttcctcgccttt 134
              ||||||||||||||||||||
Sbjct: 118014 ctaactggttcctcgccttt 118033
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>gb|AC024072.5| Homo sapiens chromosome 10 clone RP11-267O2, complete sequence
          Length = 150165

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   catcaccaggtgaaaaagaa 172
             ||||||||||||||||||||
Sbjct: 29253 catcaccaggtgaaaaagaa 29272
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>dbj|AK037727.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130042E20 product:hypothetical
            Uncharacterized protein family UPF0054 containing
            protein, full insert sequence
          Length = 3841

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  ctaactggttcctcgccttt 134
            ||||||||||||||||||||
Sbjct: 2082 ctaactggttcctcgccttt 2101
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>gb|AC005519.3|AC005519 Homo sapiens PAC clone RP5-919J22 from 14q24.3, complete sequence
          Length = 163983

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 485    ggcctcctctgccaggggccaggg 508
              ||||||||||||||| ||||||||
Sbjct: 130022 ggcctcctctgccagcggccaggg 130045
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>ref|NM_172550.3| Mus musculus RIKEN cDNA A130042E20 gene (A130042E20Rik), mRNA
          Length = 4520

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  ctaactggttcctcgccttt 134
            ||||||||||||||||||||
Sbjct: 2355 ctaactggttcctcgccttt 2374
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>gb|BC057308.1| Mus musculus RIKEN cDNA A130042E20 gene, mRNA (cDNA clone MGC:66581
            IMAGE:5703033), complete cds
          Length = 4538

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  ctaactggttcctcgccttt 134
            ||||||||||||||||||||
Sbjct: 2355 ctaactggttcctcgccttt 2374
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>dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-693A6, complete
              sequence
          Length = 182976

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    gcagcgcctcccatcaccag 161
              ||||||||||||||||||||
Sbjct: 118229 gcagcgcctcccatcaccag 118248


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,845,995
Number of Sequences: 3902068
Number of extensions: 5845995
Number of successful extensions: 104573
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104377
Number of HSP's gapped (non-prelim): 189
length of query: 722
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 699
effective length of database: 17,143,297,704
effective search space: 11983165095096
effective search space used: 11983165095096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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