ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like pr... 454 e-124
2dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 454 e-124
3dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for ... 454 e-124
4gb|BT019243.1| Zea mays clone Contig916.F mRNA sequence 301 1e-78
5gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
7dbj|AK060810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
8gb|AY108893.1| Zea mays PCO061793 mRNA sequence 206 6e-50
9gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC... 72 2e-09
10emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
11ref|XM_955819.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.0
12ref|XM_326950.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.0
13emb|BX294019.1|NC100H1 Neurospora crassa DNA linkage group V Cos... 42 2.0
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
15gb|AC008275.3| Homo sapiens BAC clone RP11-294I11 from 2, comple... 42 2.0
16gb|AF168494.1|AF168494 Acipenser baeri stenorrhynchus isolate AB... 42 2.0
17dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 2.0
18dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
19gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 ma... 40 8.0
20gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map... 40 8.0
21ref|NM_001039354.1| Mus musculus lin-7 homolog A (C. elegans) (L... 40 8.0
22ref|NM_001033223.2| Mus musculus lin-7 homolog A (C. elegans) (L... 40 8.0
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.0
24gb|AC166263.9| Mus musculus BAC RP23-145L7 (Roswell Park Cancer... 40 8.0
25gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, co... 40 8.0
26gb|AC144867.2| Xenopus tropicalis clone ISB-376E5, complete sequ... 40 8.0
27gb|AC144864.2| Xenopus tropicalis clone ISB-289E7, complete sequ... 40 8.0
28emb|BX664612.15| Zebrafish DNA sequence from clone DKEYP-78B3 in... 40 8.0
29emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in... 40 8.0
30gb|AC110819.5| Mus musculus BAC clone RP23-239K2 from chromosome... 40 8.0
31gb|AC144865.2| Xenopus tropicalis clone ISB-366A10, complete seq... 40 8.0
32gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosom... 40 8.0
33gb|BC085538.1| Danio rerio zgc:103517, mRNA (cDNA clone MGC:1035... 40 8.0
34gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.0
35gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.0
36gb|BC105965.1| Mus musculus lin-7 homolog A (C. elegans), mRNA (... 40 8.0
37dbj|AK030326.1| Mus musculus 11 days pregnant adult female ovary... 40 8.0
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
39gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
40ref|NM_001007341.1| Danio rerio zgc:103517 (zgc:103517), mRNA 40 8.0
41dbj|AK110762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
42emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, com... 40 8.0
43gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, com... 40 8.0
44emb|CR382296.26| Zebrafish DNA sequence from clone DKEY-121H17 i... 40 8.0
45emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on ch... 40 8.0
46emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 8.0
47emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chr... 40 8.0
48emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 40 8.0 
>emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like protein Imb2
          Length = 2838

 Score =  454 bits (229), Expect = e-124
 Identities = 358/401 (89%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 240
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2583 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2524

                                                                        
Query: 241  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 300
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 2523 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 2464

                                                                        
Query: 301  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 360
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 2463 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 2404

                                                                        
Query: 361  tccctgctcccatctttgtagacagcttcagtgaattgcaatagatggcctgcataaggt 420
            |||||||| |  || |||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct: 2403 tccctgctgcggtccttgtagacagcttcagtgaactgcaatagatggcttgcatagggt 2344

                                                                        
Query: 421  atcatcagctgagcttttgcgccctttagaccctgtagtatgccagagtatgcctcaaaa 480
            ||||||| |||||||||||| ||||||| |||||| |||||||||||||| || ||||| 
Sbjct: 2343 atcatcaactgagcttttgcaccctttataccctggagtatgccagagtaagcttcaaag 2284

                                                                        
Query: 481  attccccgtctgagctggttaccataatcaaccatatcctcgtcattttgatccaaaaca 540
            ||||||||||||||||||||||||||||||||||||||||| ||  | || |||||||||
Sbjct: 2283 attccccgtctgagctggttaccataatcaaccatatcctcatctgtatggtccaaaaca 2224

                                                     
Query: 541  acaagaagctcagccgccccttgaagcatcggcatagcata 581
             ||||||| || || || ||||||||||| |||||||||||
Sbjct: 2223 gcaagaagttcggcagctccttgaagcattggcatagcata 2183
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>dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029L11, full
            insert sequence
          Length = 3150

 Score =  454 bits (229), Expect = e-124
 Identities = 358/401 (89%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 240
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2887 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2828

                                                                        
Query: 241  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 300
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 2827 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 2768

                                                                        
Query: 301  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 360
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 2767 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 2708

                                                                        
Query: 361  tccctgctcccatctttgtagacagcttcagtgaattgcaatagatggcctgcataaggt 420
            |||||||| |  || |||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct: 2707 tccctgctgcggtccttgtagacagcttcagtgaactgcaatagatggcttgcatagggt 2648

                                                                        
Query: 421  atcatcagctgagcttttgcgccctttagaccctgtagtatgccagagtatgcctcaaaa 480
            ||||||| |||||||||||| ||||||| |||||| |||||||||||||| || ||||| 
Sbjct: 2647 atcatcaactgagcttttgcaccctttataccctggagtatgccagagtaagcttcaaag 2588

                                                                        
Query: 481  attccccgtctgagctggttaccataatcaaccatatcctcgtcattttgatccaaaaca 540
            ||||||||||||||||||||||||||||||||||||||||| ||  | || |||||||||
Sbjct: 2587 attccccgtctgagctggttaccataatcaaccatatcctcatctgtatggtccaaaaca 2528

                                                     
Query: 541  acaagaagctcagccgccccttgaagcatcggcatagcata 581
             ||||||| || || || ||||||||||| |||||||||||
Sbjct: 2527 gcaagaagttcggcagctccttgaagcattggcatagcata 2487
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>dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta1,
            complete cds
          Length = 3115

 Score =  454 bits (229), Expect = e-124
 Identities = 358/401 (89%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 240
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2847 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2788

                                                                        
Query: 241  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 300
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 2787 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 2728

                                                                        
Query: 301  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 360
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 2727 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 2668

                                                                        
Query: 361  tccctgctcccatctttgtagacagcttcagtgaattgcaatagatggcctgcataaggt 420
            |||||||| |  || |||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct: 2667 tccctgctgcggtccttgtagacagcttcagtgaactgcaatagatggcttgcatagggt 2608

                                                                        
Query: 421  atcatcagctgagcttttgcgccctttagaccctgtagtatgccagagtatgcctcaaaa 480
            ||||||| |||||||||||| ||||||| |||||| |||||||||||||| || ||||| 
Sbjct: 2607 atcatcaactgagcttttgcaccctttataccctggagtatgccagagtaagcttcaaag 2548

                                                                        
Query: 481  attccccgtctgagctggttaccataatcaaccatatcctcgtcattttgatccaaaaca 540
            ||||||||||||||||||||||||||||||||||||||||| ||  | || |||||||||
Sbjct: 2547 attccccgtctgagctggttaccataatcaaccatatcctcatctgtatggtccaaaaca 2488

                                                     
Query: 541  acaagaagctcagccgccccttgaagcatcggcatagcata 581
             ||||||| || || || ||||||||||| |||||||||||
Sbjct: 2487 gcaagaagttcggcagctccttgaagcattggcatagcata 2447
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>gb|BT019243.1| Zea mays clone Contig916.F mRNA sequence
          Length = 1196

 Score =  301 bits (152), Expect = 1e-78
 Identities = 293/340 (86%)
 Strand = Plus / Plus

                                                                       
Query: 242 ggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagattg 301
           |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |  
Sbjct: 376 ggcactccctcaagaactcaacatggaataggtgggtcttgaacagatcctttgagctct 435

                                                                       
Query: 302 gcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcat 361
           | ||||| ||||| ||||||||||| ||||||||||| || || |||||||| || ||||
Sbjct: 436 ggccaagcgtgtctgcaagatccccaaggacagcaactgcagcctttgtcacactgtcat 495

                                                                       
Query: 362 ccctgctcccatctttgtagacagcttcagtgaattgcaatagatggcctgcataaggta 421
           ||||||||| ||||||| |||||||||||||||| || | ||||||   |||||| || |
Sbjct: 496 ccctgctcctatctttgaagacagcttcagtgaactgtagtagatgtgttgcatatggga 555

                                                                       
Query: 422 tcatcagctgagcttttgcgccctttagaccctgtagtatgccagagtatgcctcaaaaa 481
           |||||||||||||||||| |||||| |  ||||| ||||| |||||||||||||||||||
Sbjct: 556 tcatcagctgagcttttgggcccttgatgccctggagtataccagagtatgcctcaaaaa 615

                                                                       
Query: 482 ttccccgtctgagctggttaccataatcaaccatatcctcgtcattttgatccaaaacaa 541
           | || |||||||||||||| ||||||||||||||||| || ||| | ||||| | |  | 
Sbjct: 616 tgccacgtctgagctggttgccataatcaaccatatcatcatcactctgatcaagagtac 675

                                                   
Query: 542 caagaagctcagccgccccttgaagcatcggcatagcata 581
           ||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 676 caagaagttcagcagctccttgaagcatcggcatggcata 715



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 184 tggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatcca 235
           ||||||||||||||||||| ||||   || |||||||  |||||||||||||
Sbjct: 312 tggtttatcatcccctgggcccattgtgcagtctcccgaacttcatcatcca 363
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>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10,
             complete sequence
          Length = 134183

 Score =  242 bits (122), Expect = 1e-60
 Identities = 185/206 (89%)
 Strand = Plus / Minus

                                                                         
Query: 376   ttgtagacagcttcagtgaattgcaatagatggcctgcataaggtatcatcagctgagct 435
             |||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||
Sbjct: 64284 ttgtagacagcttcagtgaactgcaatagatggcttgcatagggtatcatcaactgagct 64225

                                                                         
Query: 436   tttgcgccctttagaccctgtagtatgccagagtatgcctcaaaaattccccgtctgagc 495
             ||||| ||||||| |||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct: 64224 tttgcaccctttataccctggagtatgccagagtaagcttcaaagattccccgtctgagc 64165

                                                                         
Query: 496   tggttaccataatcaaccatatcctcgtcattttgatccaaaacaacaagaagctcagcc 555
             |||||||||||||||||||||||||| ||  | || ||||||||| ||||||| || || 
Sbjct: 64164 tggttaccataatcaaccatatcctcatctgtatggtccaaaacagcaagaagttcggca 64105

                                       
Query: 556   gccccttgaagcatcggcatagcata 581
             || ||||||||||| |||||||||||
Sbjct: 64104 gctccttgaagcattggcatagcata 64079



 Score =  226 bits (114), Expect = 6e-56
 Identities = 168/186 (90%)
 Strand = Plus / Minus

                                                                         
Query: 181   gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 240
             |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 64576 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 64517

                                                                         
Query: 241   aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 300
              |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 64516 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 64457

                                                                         
Query: 301   ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 360
             |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 64456 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 64397

                   
Query: 361   tccctg 366
             ||||||
Sbjct: 64396 tccctg 64391
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  242 bits (122), Expect = 1e-60
 Identities = 185/206 (89%)
 Strand = Plus / Minus

                                                                            
Query: 376      ttgtagacagcttcagtgaattgcaatagatggcctgcataaggtatcatcagctgagct 435
                |||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||
Sbjct: 16565545 ttgtagacagcttcagtgaactgcaatagatggcttgcatagggtatcatcaactgagct 16565486

                                                                            
Query: 436      tttgcgccctttagaccctgtagtatgccagagtatgcctcaaaaattccccgtctgagc 495
                ||||| ||||||| |||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct: 16565485 tttgcaccctttataccctggagtatgccagagtaagcttcaaagattccccgtctgagc 16565426

                                                                            
Query: 496      tggttaccataatcaaccatatcctcgtcattttgatccaaaacaacaagaagctcagcc 555
                |||||||||||||||||||||||||| ||  | || ||||||||| ||||||| || || 
Sbjct: 16565425 tggttaccataatcaaccatatcctcatctgtatggtccaaaacagcaagaagttcggca 16565366

                                          
Query: 556      gccccttgaagcatcggcatagcata 581
                || ||||||||||| |||||||||||
Sbjct: 16565365 gctccttgaagcattggcatagcata 16565340



 Score =  226 bits (114), Expect = 6e-56
 Identities = 168/186 (90%)
 Strand = Plus / Minus

                                                                            
Query: 181      gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 240
                |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 16565837 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 16565778

                                                                            
Query: 241      aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 300
                 |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 16565777 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 16565718

                                                                            
Query: 301      ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 360
                |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 16565717 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 16565658

                      
Query: 361      tccctg 366
                ||||||
Sbjct: 16565657 tccctg 16565652
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>dbj|AK060810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G12, full
            insert sequence
          Length = 2038

 Score =  242 bits (122), Expect = 1e-60
 Identities = 185/206 (89%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttgtagacagcttcagtgaattgcaatagatggcctgcataaggtatcatcagctgagct 435
            |||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||
Sbjct: 1483 ttgtagacagcttcagtgaactgcaatagatggcttgcatagggtatcatcaactgagct 1424

                                                                        
Query: 436  tttgcgccctttagaccctgtagtatgccagagtatgcctcaaaaattccccgtctgagc 495
            ||||| ||||||| |||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct: 1423 tttgcaccctttataccctggagtatgccagagtaagcttcaaagattccccgtctgagc 1364

                                                                        
Query: 496  tggttaccataatcaaccatatcctcgtcattttgatccaaaacaacaagaagctcagcc 555
            |||||||||||||||||||||||||| ||  | || ||||||||| ||||||| || || 
Sbjct: 1363 tggttaccataatcaaccatatcctcatctgtatggtccaaaacagcaagaagttcggca 1304

                                      
Query: 556  gccccttgaagcatcggcatagcata 581
            || ||||||||||| |||||||||||
Sbjct: 1303 gctccttgaagcattggcatagcata 1278



 Score =  226 bits (114), Expect = 6e-56
 Identities = 168/186 (90%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 240
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 1775 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 1716

                                                                        
Query: 241  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 300
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 1715 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 1656

                                                                        
Query: 301  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 360
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 1655 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 1596

                  
Query: 361  tccctg 366
            ||||||
Sbjct: 1595 tccctg 1590
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>gb|AY108893.1| Zea mays PCO061793 mRNA sequence
          Length = 539

 Score =  206 bits (104), Expect = 6e-50
 Identities = 176/200 (88%)
 Strand = Plus / Minus

                                                                       
Query: 247 tccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagattggccca 306
           ||||||||||||||||||||||| |||||| |||||||||||||||| ||| || | |||
Sbjct: 214 tccctcaagaactcaacatggaataggtgggtcttgaacagatcctttgagctttggcca 155

                                                                       
Query: 307 agtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccctg 366
           || |||||||| |||||||| ||||||||||| || || |||||||| || |||||||||
Sbjct: 154 agcgtgtccgcgagatccccaaggacagcaactgcagcctttgtcacactgtcatccctg 95

                                                                       
Query: 367 ctcccatctttgtagacagcttcagtgaattgcaatagatggcctgcataaggtatcatc 426
           |||| ||||||| |||||||||||||||| || | |||||||  |||||| || ||||||
Sbjct: 94  ctcctatctttggagacagcttcagtgaactgtagtagatgggttgcatatgggatcatc 35

                               
Query: 427 agctgagcttttgcgccctt 446
           ||||||||||||| ||||||
Sbjct: 34  agctgagcttttgggccctt 15



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 184 tggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatcca 235
           ||||||||||||||||||| ||||   || |||||||  |||||||||||||
Sbjct: 283 tggtttatcatcccctgggcccattgtgcagtctcccgaacttcatcatcca 232
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>gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC T16O11 genomic sequence,
             complete sequence
          Length = 80381

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                         
Query: 313   tccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccctgctccca 372
             ||||||||||| ||||   | ||||| |||||||||||||||||||||||||||||||||
Sbjct: 37202 tccgcaagatcacccattgctgcaaccgcggcttttgtcacgctctcatccctgctccca 37143



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                      
Query: 313   tccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccctgctc 369
             ||||||||||| ||||   | ||||| ||||||||||||||||||||||||||||||
Sbjct: 29974 tccgcaagatcacccatcgctgcaaccgcggcttttgtcacgctctcatccctgctc 30030
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>emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH64ZE06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2944

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 313  tccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccct 365
            ||||||||||| ||||   | ||||| ||||||||||||||||||||||||||
Sbjct: 2631 tccgcaagatcacccatcgctgcaaccgcggcttttgtcacgctctcatccct 2579
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>ref|XM_955819.1| Neurospora crassa OR74A hypothetical protein (NCU06665.1) partial
            mRNA
          Length = 2952

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 535  aaaacaacaagaagctcagccgccc 559
            ||||||||||||||||||| |||||
Sbjct: 2930 aaaacaacaagaagctcagtcgccc 2906
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>ref|XM_326950.1| Neurospora crassa OR74A hypothetical protein (NCU06665.1) partial
            mRNA
          Length = 2952

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 535  aaaacaacaagaagctcagccgccc 559
            ||||||||||||||||||| |||||
Sbjct: 2930 aaaacaacaagaagctcagtcgccc 2906
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>emb|BX294019.1|NC100H1 Neurospora crassa DNA linkage group V Cosmid contig 100H1
          Length = 77124

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 535   aaaacaacaagaagctcagccgccc 559
             ||||||||||||||||||| |||||
Sbjct: 32571 aaaacaacaagaagctcagtcgccc 32547
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 40       tactgactgactgacgctaca 60
                |||||||||||||||||||||
Sbjct: 15320277 tactgactgactgacgctaca 15320297
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>gb|AC008275.3| Homo sapiens BAC clone RP11-294I11 from 2, complete sequence
          Length = 166504

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 357    ctcatccctgctcccatcttt 377
              |||||||||||||||||||||
Sbjct: 139722 ctcatccctgctcccatcttt 139742
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>gb|AF168494.1|AF168494 Acipenser baeri stenorrhynchus isolate ABLenaFC mitochondrial
           control region, partial sequence
          Length = 716

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 448 agaccctgtagtatgccagagtatg 472
           |||||||||||||| ||||||||||
Sbjct: 99  agaccctgtagtataccagagtatg 123
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 1       aaataataaaaccacccaaga 21
               |||||||||||||||||||||
Sbjct: 1904275 aaataataaaaccacccaaga 1904255
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0418B08
          Length = 165909

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    tactgactgactgacgctaca 60
             |||||||||||||||||||||
Sbjct: 99466 tactgactgactgacgctaca 99486
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>gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 map MAP_LOC, complete
              sequence
          Length = 118497

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 280    ttgaacagatccttagagattggc 303
              |||||||||||| |||||||||||
Sbjct: 111296 ttgaacagatccctagagattggc 111319
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>gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map MAP_LOC, complete
           sequence
          Length = 125813

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 280 ttgaacagatccttagagattggc 303
           |||||||||||| |||||||||||
Sbjct: 442 ttgaacagatccctagagattggc 465
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>ref|NM_001039354.1| Mus musculus lin-7 homolog A (C. elegans) (Lin7a), transcript variant
            1, mRNA
          Length = 5887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gtttatcatcccctgggtcc 205
            ||||||||||||||||||||
Sbjct: 4933 gtttatcatcccctgggtcc 4952
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>ref|NM_001033223.2| Mus musculus lin-7 homolog A (C. elegans) (Lin7a), transcript variant
            2, mRNA
          Length = 5845

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gtttatcatcccctgggtcc 205
            ||||||||||||||||||||
Sbjct: 4891 gtttatcatcccctgggtcc 4910
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 451      ccctgtagtatgccagagtatgcctcaaaaat 482
                ||||| |||||||| ||||| |||||||||||
Sbjct: 10252681 ccctgaagtatgcctgagtaggcctcaaaaat 10252712



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 202     gtccatgacgccgtctccctcact 225
               ||||| ||||||||||||||||||
Sbjct: 7267256 gtccaggacgccgtctccctcact 7267279
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>gb|AC166263.9| Mus musculus  BAC RP23-145L7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 191221

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 90661 aataaaaccacccaagacat 90642
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>gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, complete sequence
          Length = 179236

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 74241 aataaaaccacccaagacat 74260
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>gb|AC144867.2| Xenopus tropicalis clone ISB-376E5, complete sequence
          Length = 89767

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 59806 aataaaaccacccaagacat 59787
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>gb|AC144864.2| Xenopus tropicalis clone ISB-289E7, complete sequence
          Length = 71786

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 30154 aataaaaccacccaagacat 30135
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>emb|BX664612.15| Zebrafish DNA sequence from clone DKEYP-78B3 in linkage group 7,
             complete sequence
          Length = 186965

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    acccttctgttcatatgagc 91
             ||||||||||||||||||||
Sbjct: 50365 acccttctgttcatatgagc 50384
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>emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in linkage group 4,
             complete sequence
          Length = 145220

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ctccctcacttcatcatcca 235
             ||||||||||||||||||||
Sbjct: 84088 ctccctcacttcatcatcca 84107
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>gb|AC110819.5| Mus musculus BAC clone RP23-239K2 from chromosome 6, complete sequence
          Length = 200741

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   attttgatccaaaacaacaa 544
             ||||||||||||||||||||
Sbjct: 26817 attttgatccaaaacaacaa 26798
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>gb|AC144865.2| Xenopus tropicalis clone ISB-366A10, complete sequence
          Length = 91163

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 45701 aataaaaccacccaagacat 45720
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>gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosome 10, complete
             sequence
          Length = 174112

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   gtttatcatcccctgggtcc 205
             ||||||||||||||||||||
Sbjct: 78785 gtttatcatcccctgggtcc 78804
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>gb|BC085538.1| Danio rerio zgc:103517, mRNA (cDNA clone MGC:103517 IMAGE:7239322),
            complete cds
          Length = 1996

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  ctccctcacttcatcatcca 235
            ||||||||||||||||||||
Sbjct: 1220 ctccctcacttcatcatcca 1201
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>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   gtccatgacgccgtctccctcact 225
             ||||| ||||||||||||||||||
Sbjct: 18512 gtccaggacgccgtctccctcact 18535
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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 451    ccctgtagtatgccagagtatgcctcaaaaat 482
              ||||| |||||||| ||||| |||||||||||
Sbjct: 114094 ccctgaagtatgcctgagtaggcctcaaaaat 114125
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>gb|BC105965.1| Mus musculus lin-7 homolog A (C. elegans), mRNA (cDNA clone
            MGC:102231 IMAGE:30620416), complete cds
          Length = 5500

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gtttatcatcccctgggtcc 205
            ||||||||||||||||||||
Sbjct: 4516 gtttatcatcccctgggtcc 4535
to top
>dbj|AK030326.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
            RIKEN full-length enriched library, clone:5031438B01
            product:unclassifiable, full insert sequence
          Length = 3825

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gtttatcatcccctgggtcc 205
            ||||||||||||||||||||
Sbjct: 2871 gtttatcatcccctgggtcc 2890
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 451      ccctgtagtatgccagagtatgcctcaaaaat 482
                ||||| |||||||| ||||| |||||||||||
Sbjct: 10250782 ccctgaagtatgcctgagtaggcctcaaaaat 10250813



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 202     gtccatgacgccgtctccctcact 225
               ||||| ||||||||||||||||||
Sbjct: 7265151 gtccaggacgccgtctccctcact 7265174
to top
>gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1081D05,
             complete sequence
          Length = 99133

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   gtccatgacgccgtctccctcact 225
             ||||| ||||||||||||||||||
Sbjct: 94009 gtccaggacgccgtctccctcact 94032
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>ref|NM_001007341.1| Danio rerio zgc:103517 (zgc:103517), mRNA
          Length = 1996

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  ctccctcacttcatcatcca 235
            ||||||||||||||||||||
Sbjct: 1220 ctccctcacttcatcatcca 1201
to top
>dbj|AK110762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-H08, full
           insert sequence
          Length = 1508

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 451 ccctgtagtatgccagagtatgcctcaaaaat 482
           ||||| |||||||| ||||| |||||||||||
Sbjct: 828 ccctgaagtatgcctgagtaggcctcaaaaat 797
to top
>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence
          Length = 231383

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ctccctcacttcatcatcca 235
             ||||||||||||||||||||
Sbjct: 42486 ctccctcacttcatcatcca 42505
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>gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, complete sequence
          Length = 196053

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 64475 aataaaaccacccaagacat 64494
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>emb|CR382296.26| Zebrafish DNA sequence from clone DKEY-121H17 in linkage group 21,
              complete sequence
          Length = 137360

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    gcttttgtcacgctctcatc 362
              ||||||||||||||||||||
Sbjct: 103757 gcttttgtcacgctctcatc 103738
to top
>emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on chromosome 4, complete
             sequence
          Length = 224031

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   ctcatccctgctcccatctt 376
             ||||||||||||||||||||
Sbjct: 18541 ctcatccctgctcccatctt 18560
to top
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 533     ccaaaacaacaagaagctca 552
               ||||||||||||||||||||
Sbjct: 1911225 ccaaaacaacaagaagctca 1911206
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>emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chromosome X, complete
             sequence
          Length = 143387

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 74245 aataaaaccacccaagacat 74226
to top
>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aataaaaccacccaagacat 24
             ||||||||||||||||||||
Sbjct: 93771 aataaaaccacccaagacat 93752


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,496,192
Number of Sequences: 3902068
Number of extensions: 4496192
Number of successful extensions: 96774
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96502
Number of HSP's gapped (non-prelim): 271
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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