ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR932165.1|CNS0KYGE Paramecium tetraurelia macronuclear, put... 38 0.56
2gb|AC151967.6| Mus musculus BAC clone RP24-235L23 from chromosom... 36 2.2
3gb|AY028993.1| Mus musculus protein O-mannosyltransferase 2 gene... 36 2.2
4gb|AY090483.1| Mus musculus protein O-mannosyltransferase 2 (Pom... 36 2.2
5gb|AC132609.3| Mus musculus BAC clone RP23-351O8 from 12, comple... 36 2.2
6gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H1... 34 8.7
7ref|XM_524587.1| PREDICTED: Pan troglodytes similar to hypotheti... 34 8.7
8gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, com... 34 8.7
9ref|NM_001033267.1| Mus musculus glutamine rich 2 (Qrich2), mRNA 34 8.7
10gb|AC124508.5| Mus musculus BAC clone RP23-433B5 from chromosome... 34 8.7
11gb|BC060927.1| Danio rerio PHD finger protein 2, mRNA (cDNA clon... 34 8.7
12ref|XM_992440.1| PREDICTED: Mus musculus glutamine rich 2 (Qrich... 34 8.7
13ref|XM_538474.2| PREDICTED: Canis familiaris similar to pleckstr... 34 8.7
14gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, ... 34 8.7
15gb|BC101379.2| Homo sapiens hypothetical protein FLJ32784, mRNA ... 34 8.7
16emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chro... 34 8.7
17emb|AL022726.1|HS625H18 Human DNA sequence from clone RP4-625H18... 34 8.7
18emb|AL020998.1|HS745E8 Human DNA sequence from clone RP4-745E8 o... 34 8.7
19ref|XM_780386.1| PREDICTED: Strongylocentrotus purpuratus simila... 34 8.7
20emb|CR860947.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2031 (from cl... 34 8.7
21emb|CR856018.10| Human DNA sequence from clone WI2-8974A5 on chr... 34 8.7
22emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in ... 34 8.7
23ref|NM_001039500.1| Homo sapiens hypothetical protein FLJ32784 (... 34 8.7
24dbj|AK125833.1| Homo sapiens cDNA FLJ43845 fis, clone TESTI4006326 34 8.7
25dbj|AK057346.1| Homo sapiens cDNA FLJ32784 fis, clone TESTI2002245 34 8.7
26gb|AC099329.2| Homo sapiens chromosome 3 clone RP11-70C1, comple... 34 8.7
27dbj|AK131945.1| Mus musculus ES cells cDNA, RIKEN full-length en... 34 8.7
28ref|XM_683557.1| PREDICTED: Danio rerio similar to Im:4200679 pr... 34 8.7
29ref|XM_704050.1| PREDICTED: Danio rerio similar to Im:4200679 pr... 34 8.7
30gb|AC182737.1| Gasterosteus aculeatus clone VMRC26-154C03, compl... 34 8.7
31gb|AC010419.6| Homo sapiens chromosome 5 clone CTD-2177J8, compl... 34 8.7
32gb|AC092043.3| Homo sapiens chromosome 3 clone RP11-141M3, compl... 34 8.7
33gb|AC074142.3|AC074142 Homo sapiens chromosome 5 clone RP11-20B1... 34 8.7
34gb|AC140262.4| Mus musculus BAC clone RP23-459B6 from chromosome... 34 8.7
35gb|AC016655.6|AC016655 Homo sapiens chromosome 5 clone RPCI-1_36... 34 8.7
36ref|XM_577148.1| PREDICTED: Rattus norvegicus similar to hypothe... 34 8.7
37gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, comple... 34 8.7
38emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chr... 34 8.7
39emb|AL844530.7| Mouse DNA sequence from clone RP23-248L2 on chro... 34 8.7
40gb|L20336.1|MUSGPCR15 Mouse dopamine-1A receptor homologue mRNA,... 34 8.7 
>emb|CR932165.1|CNS0KYGE Paramecium tetraurelia macronuclear, putative gene for the regulatory
            subunit of cAMP-dependent protein kinase 2, isoform 2,
            complete gene
          Length = 1260

 Score = 38.2 bits (19), Expect = 0.56
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   gcagctcttggctcatgtt 28
            |||||||||||||||||||
Sbjct: 1079 gcagctcttggctcatgtt 1061
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>gb|AC151967.6| Mus musculus BAC clone RP24-235L23 from chromosome 12, complete
             sequence
          Length = 184240

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     tctggcagctcttggctc 23
             ||||||||||||||||||
Sbjct: 10371 tctggcagctcttggctc 10388
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>gb|AY028993.1| Mus musculus protein O-mannosyltransferase 2 gene, complete cds
          Length = 38560

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     tctggcagctcttggctc 23
             ||||||||||||||||||
Sbjct: 30609 tctggcagctcttggctc 30592
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>gb|AY090483.1| Mus musculus protein O-mannosyltransferase 2 (Pomt2) gene, complete cds
          Length = 41100

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     tctggcagctcttggctc 23
             ||||||||||||||||||
Sbjct: 31029 tctggcagctcttggctc 31012
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>gb|AC132609.3| Mus musculus BAC clone RP23-351O8 from 12, complete sequence
          Length = 200045

 Score = 36.2 bits (18), Expect = 2.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     tctggcagctcttggctc 23
             ||||||||||||||||||
Sbjct: 97405 tctggcagctcttggctc 97422
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>gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H105), complete sequence
          Length = 75871

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 14    ctcttggctcatgttgc 30
             |||||||||||||||||
Sbjct: 18109 ctcttggctcatgttgc 18125
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>ref|XM_524587.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ32784
            (LOC469202), mRNA
          Length = 3030

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1    aggagtctggcagctct 17
            |||||||||||||||||
Sbjct: 1556 aggagtctggcagctct 1572
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>gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, complete sequence
          Length = 163965

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                   
Query: 2      ggagtctggcagctcttggct 22
              ||||||||| |||||||||||
Sbjct: 131800 ggagtctgggagctcttggct 131820
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>ref|NM_001033267.1| Mus musculus glutamine rich 2 (Qrich2), mRNA
          Length = 2166

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 9    ggcagctcttggctcat 25
            |||||||||||||||||
Sbjct: 1141 ggcagctcttggctcat 1157
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>gb|AC124508.5| Mus musculus BAC clone RP23-433B5 from chromosome 7, complete sequence
          Length = 188011

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 8     tggcagctcttggctca 24
             |||||||||||||||||
Sbjct: 39161 tggcagctcttggctca 39177
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>gb|BC060927.1| Danio rerio PHD finger protein 2, mRNA (cDNA clone IMAGE:4200679),
            partial cds
          Length = 2915

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 3    gagtctggcagctcttg 19
            |||||||||||||||||
Sbjct: 1829 gagtctggcagctcttg 1845
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>ref|XM_992440.1| PREDICTED: Mus musculus glutamine rich 2 (Qrich2), mRNA
          Length = 2723

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 9    ggcagctcttggctcat 25
            |||||||||||||||||
Sbjct: 1724 ggcagctcttggctcat 1740
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>ref|XM_538474.2| PREDICTED: Canis familiaris similar to pleckstrin homology domain
            containing, family H (with MyTH4 domain) member 2
            (LOC481353), mRNA
          Length = 4654

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 7    ctggcagctcttggctc 23
            |||||||||||||||||
Sbjct: 3240 ctggcagctcttggctc 3256
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>gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, RP23-193K14, complete
              sequence
          Length = 214157

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 9      ggcagctcttggctcat 25
              |||||||||||||||||
Sbjct: 128403 ggcagctcttggctcat 128419
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>gb|BC101379.2| Homo sapiens hypothetical protein FLJ32784, mRNA (cDNA clone
          IMAGE:40026019), partial cds
          Length = 1808

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  aggagtctggcagctct 17
          |||||||||||||||||
Sbjct: 69 aggagtctggcagctct 85
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>emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 163058

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 14    ctcttggctcatgttgc 30
             |||||||||||||||||
Sbjct: 26398 ctcttggctcatgttgc 26414
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>emb|AL022726.1|HS625H18 Human DNA sequence from clone RP4-625H18 on chromosome 6p22.2-23
             Contains the ID4 gene for dominant negative
             helix-loop-helix inhibitor of DNA binding 4 protein, a
             novel gene, the 5' end of two novel genes and four CpG
             islands, complete sequence
          Length = 185371

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 1     aggagtctggcagctct 17
             |||||||||||||||||
Sbjct: 53470 aggagtctggcagctct 53454
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>emb|AL020998.1|HS745E8 Human DNA sequence from clone RP4-745E8 on chromosome 1p35.2-36.13
             Contains the gene for a novel protein (FLJ43845, FLJ32784)
             and a novel gene, complete sequence
          Length = 80767

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 1     aggagtctggcagctct 17
             |||||||||||||||||
Sbjct: 55369 aggagtctggcagctct 55385
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>ref|XM_780386.1| PREDICTED: Strongylocentrotus purpuratus similar to RING finger
           protein 14 (Androgen receptor-associated protein 54)
           (Triad2 protein) (HFB30) (LOC580319), mRNA
          Length = 1518

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 2   ggagtctggcagctctt 18
           |||||||||||||||||
Sbjct: 998 ggagtctggcagctctt 982
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>emb|CR860947.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2031 (from clone DKFZp469E2031)
          Length = 2474

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 5    gtctggcagctcttggctcat 25
            |||||||||||| ||||||||
Sbjct: 1167 gtctggcagctcctggctcat 1147
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>emb|CR856018.10| Human DNA sequence from clone WI2-8974A5 on chromosome X, complete
             sequence
          Length = 37323

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 1     aggagtctggcagctct 17
             |||||||||||||||||
Sbjct: 22764 aggagtctggcagctct 22748
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>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11,
             complete sequence
          Length = 230487

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 3     gagtctggcagctcttg 19
             |||||||||||||||||
Sbjct: 31074 gagtctggcagctcttg 31058
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>ref|NM_001039500.1| Homo sapiens hypothetical protein FLJ32784 (FLJ32784), mRNA
          Length = 3725

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1    aggagtctggcagctct 17
            |||||||||||||||||
Sbjct: 2137 aggagtctggcagctct 2153
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>dbj|AK125833.1| Homo sapiens cDNA FLJ43845 fis, clone TESTI4006326
          Length = 3725

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1    aggagtctggcagctct 17
            |||||||||||||||||
Sbjct: 2137 aggagtctggcagctct 2153
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>dbj|AK057346.1| Homo sapiens cDNA FLJ32784 fis, clone TESTI2002245
          Length = 2116

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  aggagtctggcagctct 17
          |||||||||||||||||
Sbjct: 72 aggagtctggcagctct 88
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>gb|AC099329.2| Homo sapiens chromosome 3 clone RP11-70C1, complete sequence
          Length = 167667

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 3      gagtctggcagctcttg 19
              |||||||||||||||||
Sbjct: 124157 gagtctggcagctcttg 124141
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>dbj|AK131945.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
            clone:2410022A04 product:hypothetical Glutamine-rich
            region profile/Heavy metal transport/detoxification
            protein containing protein, full insert sequence
          Length = 2166

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 9    ggcagctcttggctcat 25
            |||||||||||||||||
Sbjct: 1141 ggcagctcttggctcat 1157
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>ref|XM_683557.1| PREDICTED: Danio rerio similar to Im:4200679 protein, transcript
            variant 1 (LOC563119), mRNA
          Length = 3242

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 3    gagtctggcagctcttg 19
            |||||||||||||||||
Sbjct: 1997 gagtctggcagctcttg 2013
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>ref|XM_704050.1| PREDICTED: Danio rerio similar to Im:4200679 protein, transcript
            variant 2 (LOC563119), mRNA
          Length = 3227

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 3    gagtctggcagctcttg 19
            |||||||||||||||||
Sbjct: 1982 gagtctggcagctcttg 1998
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>gb|AC182737.1| Gasterosteus aculeatus clone VMRC26-154C03, complete sequence
          Length = 109447

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 1     aggagtctggcagctct 17
             |||||||||||||||||
Sbjct: 11970 aggagtctggcagctct 11986
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>gb|AC010419.6| Homo sapiens chromosome 5 clone CTD-2177J8, complete sequence
          Length = 124752

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 2     ggagtctggcagctctt 18
             |||||||||||||||||
Sbjct: 74433 ggagtctggcagctctt 74449
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>gb|AC092043.3| Homo sapiens chromosome 3 clone RP11-141M3, complete sequence
          Length = 176140

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 3     gagtctggcagctcttg 19
             |||||||||||||||||
Sbjct: 51520 gagtctggcagctcttg 51504
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>gb|AC074142.3|AC074142 Homo sapiens chromosome 5 clone RP11-20B15, complete sequence
          Length = 161144

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 2      ggagtctggcagctctt 18
              |||||||||||||||||
Sbjct: 157317 ggagtctggcagctctt 157333
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>gb|AC140262.4| Mus musculus BAC clone RP23-459B6 from chromosome 12, complete sequence
          Length = 179484

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 2     ggagtctggcagctcttggct 22
             ||||||||| |||||||||||
Sbjct: 10756 ggagtctgggagctcttggct 10776
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>gb|AC016655.6|AC016655 Homo sapiens chromosome 5 clone RPCI-1_36N5, complete sequence
          Length = 111388

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 2     ggagtctggcagctctt 18
             |||||||||||||||||
Sbjct: 72034 ggagtctggcagctctt 72050
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>ref|XM_577148.1| PREDICTED: Rattus norvegicus similar to hypothetical protein
            DKFZp434P0316 (LOC501747), mRNA
          Length = 4311

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 9    ggcagctcttggctcat 25
            |||||||||||||||||
Sbjct: 3542 ggcagctcttggctcat 3558
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>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence
          Length = 192938

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                   
Query: 2      ggagtctggcagctcttggct 22
              ||||||||| |||||||||||
Sbjct: 130278 ggagtctgggagctcttggct 130298
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>emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chromosome 11, complete
              sequence
          Length = 212385

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 9      ggcagctcttggctcat 25
              |||||||||||||||||
Sbjct: 194011 ggcagctcttggctcat 193995
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>emb|AL844530.7| Mouse DNA sequence from clone RP23-248L2 on chromosome 2, complete
             sequence
          Length = 169779

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 3     gagtctggcagctcttg 19
             |||||||||||||||||
Sbjct: 80324 gagtctggcagctcttg 80340
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>gb|L20336.1|MUSGPCR15 Mouse dopamine-1A receptor homologue mRNA, partial cds
          Length = 266

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 5   gtctggcagctcttggc 21
           |||||||||||||||||
Sbjct: 154 gtctggcagctcttggc 138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 191,921
Number of Sequences: 3902068
Number of extensions: 191921
Number of successful extensions: 48913
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48859
Number of HSP's gapped (non-prelim): 54
length of query: 30
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 10
effective length of database: 17,155,003,908
effective search space: 171550039080
effective search space used: 171550039080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
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