ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17k22 |
|---|---|
| Clone Library Name | barley_pub |
>ERG19_RAT (Q62967) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase) Length = 401 Score = 74.3 bits (181), Expect = 3e-13 Identities = 51/130 (39%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Frame = -3 Query: 623 YMNDTSHRIISLVEKWNHSEGTPQVAYTFDAGPNAVLIARNRKTATLLLQRLLYTFPPQE 444 Y+NDTS RII LV ++N G +VAYTFDAGPNAV+ T + + ++FPP Sbjct: 277 YLNDTSRRIIQLVHRFNAHHGQTKVAYTFDAGPNAVIFTL-EDTVAEFVAAVRHSFPPAA 335 Query: 443 NDLDSYMLGDKSILSDAGLQSIADVEALPPPPEMKTQ--NQKFKGDVSYFICSRPGAGPK 270 N GDK + GLQ V + E+KT + G V Y I ++ G GP+ Sbjct: 336 N-------GDKFL---KGLQ----VAPVLLSDELKTSLATEPSPGGVQYIIATQVGPGPQ 381 Query: 269 VLVDESHSLI 240 VL D H L+ Sbjct: 382 VLDDPHHHLL 391
>ERG19_MOUSE (Q99JF5) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase) Length = 401 Score = 71.2 bits (173), Expect = 2e-12 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 2/136 (1%) Frame = -3 Query: 623 YMNDTSHRIISLVEKWNHSEGTPQVAYTFDAGPNAVLIARNRKTATLLLQRLLYTFPPQE 444 Y+NDTS RII LV ++N +G +VAYTFDAGPNAV+ T + + ++FPP Sbjct: 277 YLNDTSRRIIQLVHRFNTHQGQTKVAYTFDAGPNAVIFTL-EDTVAEFVAAVRHSFPPAA 335 Query: 443 NDLDSYMLGDK--SILSDAGLQSIADVEALPPPPEMKTQNQKFKGDVSYFICSRPGAGPK 270 N D ++ G + +L L++ VE P G V Y I ++ G GP+ Sbjct: 336 NG-DKFLKGLQVAPVLLSDELKAALAVEPSP-------------GGVQYIIATQVGPGPQ 381 Query: 269 VLVDESHSLIDSATGL 222 VL D++H + GL Sbjct: 382 VL-DDTHDHLLGQDGL 396
>ERG19_HUMAN (P53602) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase) Length = 400 Score = 60.8 bits (146), Expect = 3e-09 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -3 Query: 623 YMNDTSHRIISLVEKWNHSEGTPQVAYTFDAGPNAVLIARNRKTATLLLQRLLYTFPPQE 444 Y+N S RII LV ++N G +VAYTFDAGPNAV+ + T + + + FPP Sbjct: 276 YLNAISWRIIHLVHRFNAHHGDTKVAYTFDAGPNAVIFTLD-DTVAEFVAAVWHGFPPGS 334 Query: 443 NDLDSYMLG--DKSILSDAGLQSIADVEALPPPPEMKTQNQKFKGDVSYFICSRPGAGPK 270 N D+++ G + A LQ+ +E P G V Y I ++ G GP+ Sbjct: 335 NG-DTFLKGLQVRPAPLSAELQAALAMEPTP-------------GGVKYIIVTQVGPGPQ 380 Query: 269 VLVDESHSLI 240 +L D L+ Sbjct: 381 ILDDPCAHLL 390
>ERG19_YEAST (P32377) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate-5-diphosphate decarboxylase) (MDD) Length = 396 Score = 57.4 bits (137), Expect = 3e-08 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Frame = -3 Query: 623 YMNDTSHRIISLVEKWNHSEGTPQVAYTFDAGPNAVL--IARNRKTATLLLQRLLYTFPP 450 YMNDTS RIIS N G VAYTFDAGPNAVL +A N + +L + P Sbjct: 273 YMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESKLFAFIYKLFGSVPG 332 Query: 449 QENDLDSYMLGDKSILSDAGLQSIADVEALPPPPEMKTQNQKFKGDVSYFICSRPGAGPK 270 + + L + ++ + +++ + + DV+ I ++ G+GP+ Sbjct: 333 WDKKFTTEQLEAFNHQFESSNFTARELDL------------ELQKDVARVILTQVGSGPQ 380 Query: 269 VLVDESHSLIDSATGLAK 216 + + SLID+ TGL K Sbjct: 381 ---ETNESLIDAKTGLPK 395
>AMT2_ARATH (Q9M6N7) Ammonium transporter 2 (AtAMT2)| Length = 475 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = +3 Query: 237 INQGVALIDKNFWAGPRPTADEVA----NITLEFLVLGLHLWRRWKGLDIG 377 ++ GVA +W GPRP AD N+ L GL LW W G + G Sbjct: 189 LSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGL-LWMGWSGFNGG 238
>PROA_SHIFL (Q83SH9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 77 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRSG 253 +K V + + + C T +N N DS P +S + + S +TL + A L Q ++G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAG 297
>NCBP1_ASHGO (Q754H6) Nuclear cap-binding protein complex subunit 1| Length = 860 Score = 30.4 bits (67), Expect = 4.4 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = -3 Query: 503 NRKTATLLLQRLLYTFPPQENDLDSYMLGDKSILSDAGLQSIADVEALPPPPEMKTQ 333 NR T TLL+Q L+Y+ + + Y +SDA + +E + PPE+K Q Sbjct: 633 NRFTVTLLIQALVYSGNRSLSHANKY-------ISDAKSDLVTILEKMEVPPEVKEQ 682
>SPT21_YEAST (P35209) Protein SPT21| Length = 758 Score = 30.0 bits (66), Expect = 5.8 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = -3 Query: 569 SEGTPQVAYTFDAGPNAVLIARNRKTATLLLQRLLYTFPPQENDLDSYMLGD---KSILS 399 S+ T ++ YT D G N +AR+R + + + FP N+ +G K+IL Sbjct: 5 SQMTLKILYTLDNGSNGSYLARSRAPKQVRVANIPSPFPTDSNEQTELRIGAIHLKTILH 64 Query: 398 DAGLQS 381 + L S Sbjct: 65 EIYLNS 70
>PROA_SHISS (Q3Z594) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 77 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRSG 253 +K V + + + C T +N N DS P +S + + S +TL + A L Q ++G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAG 297
>PROA_SHIDS (Q32J27) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 77 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRSG 253 +K V + + + C T +N N DS P +S + + S +TL + A L Q ++G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQTG 297
>PROA_SHIBS (Q325P3) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 77 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRSG 253 +K V + + + C T +N N DS P +S + + S +TL + A L Q ++G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAG 297
>PROA_ECOLI (P07004) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 77 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRSG 253 +K V + + + C T +N N DS P +S + + S +TL + A L Q ++G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAG 297
>PROA_ECOL6 (Q8FKM3) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +2 Query: 77 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRSG 253 +K V + + + C T +N N DS P +S + + S +TL + A L Q ++G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQTG 297
>APOM_PONPY (Q5R894) Apolipoprotein M (Apo-M) (ApoM)| Length = 188 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 371 HRLWTAIRHRLGSIYRRAYSCPSHS 445 H++W A+ + G I Y CP HS Sbjct: 3 HQIWAALLYFYGIILNSIYQCPEHS 27
>APOM_HUMAN (O95445) Apolipoprotein M (Apo-M) (ApoM) (Protein G3a)| Length = 188 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 371 HRLWTAIRHRLGSIYRRAYSCPSHS 445 H++W A+ + G I Y CP HS Sbjct: 3 HQIWAALLYFYGIILNSIYQCPEHS 27
>HMP_PSEPK (Q88PP0) Flavohemoprotein (Hemoglobin-like protein)| (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NO oxygenase) (NOD) Length = 392 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 485 LLLQRLLYTFPPQENDLDSYMLGDKSILS 399 LL + LL + PQE D+D+Y LG K ++ Sbjct: 336 LLSEDLLAEWLPQERDVDAYFLGPKGFMA 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,588,764 Number of Sequences: 219361 Number of extensions: 2107906 Number of successful extensions: 5215 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5213 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
