Clone Information

BLAST Search Result

Clone Name	rbags17k21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	341	2e-90
2	dbj\|AP001800.2\| Oryza sativa (japonica cultivar-group) genomic D...	341	2e-90
3	dbj\|AP002094.1\| Oryza sativa (japonica cultivar-group) genomic D...	341	2e-90
4	dbj\|AK063996.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	341	2e-90
5	ref\|NM_188507.1\| Oryza sativa (japonica cultivar-group), Ozsa817...	323	4e-85
6	ref\|XM_507080.1\| PREDICTED Oryza sativa (japonica cultivar-group...	92	3e-15
7	dbj\|AK066642.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	92	3e-15
8	gb\|AC108498.2\| Oryza sativa (japonica cultivar-group) chromosome...	66	2e-07
9	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	2e-07
10	ref\|XM_473869.1\| Oryza sativa (japonica cultivar-group), predic...	46	0.15
11	gb\|AC091463.9\| Mus musculus chromosome 16, clone RP23-301D7, com...	46	0.15
12	gb\|AC132349.3\| Mus musculus BAC clone RP24-82B7 from chromosome ...	46	0.15
13	emb\|AL731610.4\|OSJN00255 Oryza sativa genomic DNA, chromosome 4,...	46	0.15
14	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
15	dbj\|AK065653.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.15
16	gb\|AC154300.2\| Mus musculus BAC clone RP23-390F4 from 12, comple...	46	0.15
17	emb\|CR555290.8\| Zebrafish DNA sequence from clone DKEYP-10A10 in...	44	0.60
18	gb\|AY107152.1\| Zea mays PCO111123 mRNA sequence	44	0.60
19	gb\|AC104862.15\| Mus musculus chromosome 15, clone RP23-124I9, co...	42	2.4
20	gb\|AC120787.14\| Mus musculus chromosome 15, clone RP24-180L12, c...	42	2.4
21	emb\|AL590550.8\| Human DNA sequence from clone RP11-398B19 on chr...	42	2.4
22	gb\|AF306785.1\|AF306785 Mus musculus type II keratin 5 (K5) gene,...	42	2.4
23	gb\|AC008250.23\| Homo sapiens 12 BAC RP11-729I10 (Roswell Park Ca...	42	2.4
24	gb\|AC068630.21\| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Can...	42	2.4
25	emb\|AL929311.8\| Mouse DNA sequence from clone RP23-291N2 on chro...	42	2.4
26	ref\|NM_188240.1\| Oryza sativa (japonica cultivar-group), predic...	40	9.4
27	ref\|NM_015124.2\| Homo sapiens death-inducing-protein (DIP), mRNA	40	9.4
28	gb\|DP000013.1\| Otolemur garnettii target 1 genomic scaffold	40	9.4
29	gb\|AC053466.6\| Homo sapiens chromosome 10 clone RP11-491G3, comp...	40	9.4
30	gb\|AC138580.19\| Medicago truncatula clone mth2-14e15, complete s...	40	9.4
31	gb\|AC159882.2\| Mus musculus BAC clone RP24-480A4 from chromosome...	40	9.4
32	emb\|CR388093.11\| Zebrafish DNA sequence from clone CH211-279L9 i...	40	9.4
33	gb\|AC091549.11\| Homo sapiens chromosome 8, clone RP11-343D20, co...	40	9.4
34	gb\|AC068185.9\| Homo sapiens chromosome 11, clone RP11-330I10, co...	40	9.4
35	gb\|AC087713.4\| Homo sapiens chromosome 8, clone RP11-731D15, com...	40	9.4
36	gb\|AC009866.6\| Homo sapiens chromosome 11, clone RP11-61E7, comp...	40	9.4
37	gb\|BC080189.1\| Homo sapiens death-inducing-protein, mRNA (cDNA c...	40	9.4
38	gb\|AC017037.10\|AC017037 Homo sapiens BAC clone RP11-312A15 from ...	40	9.4
39	dbj\|AB018310.2\| Homo sapiens mRNA for KIAA0767 protein, partial cds	40	9.4
40	gb\|AC146534.3\| Otolemur garnettii clone CH256-50E17, complete se...	40	9.4
41	dbj\|AP003417.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
42	emb\|CR456470.1\| Homo sapiens dJ439F8.1 full length open reading ...	40	9.4

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  341 bits (172), Expect = 2e-90
 Identities = 343/400 (85%)
 Strand = Plus / Minus

                                                                           
Query: 224     gctcaaagattgagatgaagcctcgaagtaagttggttttggagttgttgggcagctaag 283
               |||||||||||||||||||| ||| || ||||||||||| || || |  ||||||| |||
Sbjct: 6654062 gctcaaagattgagatgaagtctcaaaataagttggtttcggtgtggaggggcagccaag 6654003

                                                                           
Query: 284     tgatctgactagctcttgaacagacaggaccttgtactttgtaggtgggttcgtagcaat 343
                ||||||| |||||| || || | |||||||||| ||||||| ||||| ||| |||||| 
Sbjct: 6654002 cgatctgattagctcgtggactggcaggaccttgaactttgttggtggattcatagcaac 6653943

                                                                           
Query: 344     gttatgtaccttgtgctcatagatcttcccgttcctgtcgagtttgtacacggaggcgcc 403
                || || ||||| ||||| ||||||||||| ||| |||||||||| ||| | || || ||
Sbjct: 6653942 attgtgcaccttatgctcgtagatcttcccattcttgtcgagtttatactcagaagcacc 6653883

                                                                           
Query: 404     gtcaaagcgggcatgaccatcccatgggaccctaggaataccatgggcaatccagcgaat 463
                ||||||||  ||||  | ||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 6653882 atcaaagcgaccatgggcctcccatgggactcgaggaatgccatgggcaatccagcgaat 6653823

                                                                           
Query: 464     cataataagattctcagcaggctgccatatactaactatatcaacccataatgctttgaa 523
               ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6653822 catgataagattctcagcaggctgccatatactaactatatcaacccatagtgctttgaa 6653763

                                                                           
Query: 524     gaagatccgtccagtaaagcgcaatccccagaataaacttttgtaattgtcaatgccctc 583
               |||||| || || || ||||||||| |||||||||  ||||| ||||| |||||||||||
Sbjct: 6653762 gaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatgccctc 6653703

                                                       
Query: 584     aaatttattgaaagggtctctgacgacaatatcatctctg 623
                |||||||||| ||| ||| ||| ||||||||||||||||
Sbjct: 6653702 gaatttattgagaggatctttgaagacaatatcatctctg 6653663



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 621     ctgtatatatcgaagctgggctccttgtagaagacgtcgggaatctcctccttgagcgta 680
               ||||| || |||||||||||||||||| ||||||| ||||| | ||||||| | ||||| 
Sbjct: 6652576 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 6652517

                    
Query: 681     cggat 685
               |||||
Sbjct: 6652516 cggat 6652512



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 134     ctatccttctctgagatttgctagagaaagcatatggc 171
               |||||||||||  ||||||| ||| |||||||||||||
Sbjct: 6654152 ctatccttctcccagatttggtagcgaaagcatatggc 6654115



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 606     acgacaatatcatctctgta 625
               ||||||||||||||||||||
Sbjct: 5162440 acgacaatatcatctctgta 5162459

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>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0443E05
          Length = 176935

 Score =  341 bits (172), Expect = 2e-90
 Identities = 343/400 (85%)
 Strand = Plus / Minus

                                                                        
Query: 224  gctcaaagattgagatgaagcctcgaagtaagttggttttggagttgttgggcagctaag 283
            |||||||||||||||||||| ||| || ||||||||||| || || |  ||||||| |||
Sbjct: 6214 gctcaaagattgagatgaagtctcaaaataagttggtttcggtgtggaggggcagccaag 6155

                                                                        
Query: 284  tgatctgactagctcttgaacagacaggaccttgtactttgtaggtgggttcgtagcaat 343
             ||||||| |||||| || || | |||||||||| ||||||| ||||| ||| |||||| 
Sbjct: 6154 cgatctgattagctcgtggactggcaggaccttgaactttgttggtggattcatagcaac 6095

                                                                        
Query: 344  gttatgtaccttgtgctcatagatcttcccgttcctgtcgagtttgtacacggaggcgcc 403
             || || ||||| ||||| ||||||||||| ||| |||||||||| ||| | || || ||
Sbjct: 6094 attgtgcaccttatgctcgtagatcttcccattcttgtcgagtttatactcagaagcacc 6035

                                                                        
Query: 404  gtcaaagcgggcatgaccatcccatgggaccctaggaataccatgggcaatccagcgaat 463
             ||||||||  ||||  | ||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 6034 atcaaagcgaccatgggcctcccatgggactcgaggaatgccatgggcaatccagcgaat 5975

                                                                        
Query: 464  cataataagattctcagcaggctgccatatactaactatatcaacccataatgctttgaa 523
            ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5974 catgataagattctcagcaggctgccatatactaactatatcaacccatagtgctttgaa 5915

                                                                        
Query: 524  gaagatccgtccagtaaagcgcaatccccagaataaacttttgtaattgtcaatgccctc 583
            |||||| || || || ||||||||| |||||||||  ||||| ||||| |||||||||||
Sbjct: 5914 gaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatgccctc 5855

                                                    
Query: 584  aaatttattgaaagggtctctgacgacaatatcatctctg 623
             |||||||||| ||| ||| ||| ||||||||||||||||
Sbjct: 5854 gaatttattgagaggatctttgaagacaatatcatctctg 5815



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 621  ctgtatatatcgaagctgggctccttgtagaagacgtcgggaatctcctccttgagcgta 680
            ||||| || |||||||||||||||||| ||||||| ||||| | ||||||| | ||||| 
Sbjct: 4728 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 4669

                 
Query: 681  cggat 685
            |||||
Sbjct: 4668 cggat 4664



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 134  ctatccttctctgagatttgctagagaaagcatatggc 171
            |||||||||||  ||||||| ||| |||||||||||||
Sbjct: 6304 ctatccttctcccagatttggtagcgaaagcatatggc 6267

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>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483F08
          Length = 148985

 Score =  341 bits (172), Expect = 2e-90
 Identities = 343/400 (85%)
 Strand = Plus / Minus

                                                                          
Query: 224    gctcaaagattgagatgaagcctcgaagtaagttggttttggagttgttgggcagctaag 283
              |||||||||||||||||||| ||| || ||||||||||| || || |  ||||||| |||
Sbjct: 134233 gctcaaagattgagatgaagtctcaaaataagttggtttcggtgtggaggggcagccaag 134174

                                                                          
Query: 284    tgatctgactagctcttgaacagacaggaccttgtactttgtaggtgggttcgtagcaat 343
               ||||||| |||||| || || | |||||||||| ||||||| ||||| ||| |||||| 
Sbjct: 134173 cgatctgattagctcgtggactggcaggaccttgaactttgttggtggattcatagcaac 134114

                                                                          
Query: 344    gttatgtaccttgtgctcatagatcttcccgttcctgtcgagtttgtacacggaggcgcc 403
               || || ||||| ||||| ||||||||||| ||| |||||||||| ||| | || || ||
Sbjct: 134113 attgtgcaccttatgctcgtagatcttcccattcttgtcgagtttatactcagaagcacc 134054

                                                                          
Query: 404    gtcaaagcgggcatgaccatcccatgggaccctaggaataccatgggcaatccagcgaat 463
               ||||||||  ||||  | ||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 134053 atcaaagcgaccatgggcctcccatgggactcgaggaatgccatgggcaatccagcgaat 133994

                                                                          
Query: 464    cataataagattctcagcaggctgccatatactaactatatcaacccataatgctttgaa 523
              ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 133993 catgataagattctcagcaggctgccatatactaactatatcaacccatagtgctttgaa 133934

                                                                          
Query: 524    gaagatccgtccagtaaagcgcaatccccagaataaacttttgtaattgtcaatgccctc 583
              |||||| || || || ||||||||| |||||||||  ||||| ||||| |||||||||||
Sbjct: 133933 gaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatgccctc 133874

                                                      
Query: 584    aaatttattgaaagggtctctgacgacaatatcatctctg 623
               |||||||||| ||| ||| ||| ||||||||||||||||
Sbjct: 133873 gaatttattgagaggatctttgaagacaatatcatctctg 133834



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                          
Query: 621    ctgtatatatcgaagctgggctccttgtagaagacgtcgggaatctcctccttgagcgta 680
              ||||| || |||||||||||||||||| ||||||| ||||| | ||||||| | ||||| 
Sbjct: 132747 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 132688

                   
Query: 681    cggat 685
              |||||
Sbjct: 132687 cggat 132683



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 134    ctatccttctctgagatttgctagagaaagcatatggc 171
              |||||||||||  ||||||| ||| |||||||||||||
Sbjct: 134323 ctatccttctcccagatttggtagcgaaagcatatggc 134286

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>dbj|AK063996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E12, full
            insert sequence
          Length = 2143

 Score =  341 bits (172), Expect = 2e-90
 Identities = 343/400 (85%)
 Strand = Plus / Minus

                                                                        
Query: 224  gctcaaagattgagatgaagcctcgaagtaagttggttttggagttgttgggcagctaag 283
            |||||||||||||||||||| ||| || ||||||||||| || || |  ||||||| |||
Sbjct: 1915 gctcaaagattgagatgaagtctcaaaataagttggtttcggtgtggaggggcagccaag 1856

                                                                        
Query: 284  tgatctgactagctcttgaacagacaggaccttgtactttgtaggtgggttcgtagcaat 343
             ||||||| |||||| || || | |||||||||| ||||||| ||||| ||| |||||| 
Sbjct: 1855 cgatctgattagctcgtggactggcaggaccttgaactttgttggtggattcatagcaac 1796

                                                                        
Query: 344  gttatgtaccttgtgctcatagatcttcccgttcctgtcgagtttgtacacggaggcgcc 403
             || || ||||| ||||| ||||||||||| ||| |||||||||| ||| | || || ||
Sbjct: 1795 attgtgcaccttatgctcgtagatcttcccattcttgtcgagtttatactcagaagcacc 1736

                                                                        
Query: 404  gtcaaagcgggcatgaccatcccatgggaccctaggaataccatgggcaatccagcgaat 463
             ||||||||  ||||  | ||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 1735 atcaaagcgaccatgggcctcccatgggactcgaggaatgccatgggcaatccagcgaat 1676

                                                                        
Query: 464  cataataagattctcagcaggctgccatatactaactatatcaacccataatgctttgaa 523
            ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1675 catgataagattctcagcaggctgccatatactaactatatcaacccatagtgctttgaa 1616

                                                                        
Query: 524  gaagatccgtccagtaaagcgcaatccccagaataaacttttgtaattgtcaatgccctc 583
            |||||| || || || ||||||||| |||||||||  ||||| ||||| |||||||||||
Sbjct: 1615 gaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatgccctc 1556

                                                    
Query: 584  aaatttattgaaagggtctctgacgacaatatcatctctg 623
             |||||||||| ||| ||| ||| ||||||||||||||||
Sbjct: 1555 gaatttattgagaggatctttgaagacaatatcatctctg 1516



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 621 ctgtatatatcgaagctgggctccttgtagaagacgtcgggaatctcctccttgagcgta 680
           ||||| || |||||||||||||||||| ||||||| ||||| | ||||||| | ||||| 
Sbjct: 429 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 370

                
Query: 681 cggat 685
           |||||
Sbjct: 369 cggat 365



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 134  ctatccttctctgagatttgctagagaaagcatatggc 171
            |||||||||||  ||||||| ||| |||||||||||||
Sbjct: 2005 ctatccttctcccagatttggtagcgaaagcatatggc 1968

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>ref|NM_188507.1| Oryza sativa (japonica cultivar-group), Ozsa8176 predicted mRNA
          Length = 717

 Score =  323 bits (163), Expect = 4e-85
 Identities = 292/335 (87%)
 Strand = Plus / Minus

                                                                       
Query: 351 accttgtgctcatagatcttcccgttcctgtcgagtttgtacacggaggcgccgtcaaag 410
           ||||| ||||| ||||||||||| ||| |||||||||| ||| | || || || ||||||
Sbjct: 638 accttatgctcgtagatcttcccattcttgtcgagtttatactcagaagcaccatcaaag 579

                                                                       
Query: 411 cgggcatgaccatcccatgggaccctaggaataccatgggcaatccagcgaatcataata 470
           ||  ||||  | ||||||||||| | |||||| ||||||||||||||||||||||| |||
Sbjct: 578 cgaccatgggcctcccatgggactcgaggaatgccatgggcaatccagcgaatcatgata 519

                                                                       
Query: 471 agattctcagcaggctgccatatactaactatatcaacccataatgctttgaagaagatc 530
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 518 agattctcagcaggctgccatatactaactatatcaacccatagtgctttgaagaagatt 459

                                                                       
Query: 531 cgtccagtaaagcgcaatccccagaataaacttttgtaattgtcaatgccctcaaattta 590
           || || || ||||||||| |||||||||  ||||| ||||| ||||||||||| ||||||
Sbjct: 458 cggccggtgaagcgcaatgcccagaatatccttttataattatcaatgccctcgaattta 399

                                                                       
Query: 591 ttgaaagggtctctgacgacaatatcatctctgtatatatcgaagctgggctccttgtag 650
           |||| ||| ||| ||| |||||||||||||||||| || |||||||||||||||||| ||
Sbjct: 398 ttgagaggatctttgaagacaatatcatctctgtagatgtcgaagctgggctccttggag 339

                                              
Query: 651 aagacgtcgggaatctcctccttgagcgtacggat 685
           ||||| ||||| | ||||||| | ||||| |||||
Sbjct: 338 aagacatcggggagctcctccctcagcgtccggat 304

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>ref|XM_507080.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA
          Length = 903

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 304/390 (77%)
 Strand = Plus / Minus

                                                                       
Query: 255 gttggttttggagttgttgggcagctaagtgatctgactagctcttgaacagacaggacc 314
           |||||||||||||| | |||||| | |||||||||||  ||||||   || | || ||||
Sbjct: 785 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 726

                                                                       
Query: 315 ttgtactttgtaggtgggttcgtagcaatgttatgtaccttgtgctcatagatcttcccg 374
           ||  | || || |||| |||| | ||||  ||||  ||||| ||||||||||||||||| 
Sbjct: 725 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 666

                                                                       
Query: 375 ttcctgtcgagtttgtacacggaggcgccgtcaaagcgggcatgaccatcccatgggacc 434
           ||| |||| |  || ||| | |||| ||| ||||| | | || | |||||| |  | || 
Sbjct: 665 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 606

                                                                       
Query: 435 ctaggaataccatgggcaatccagcgaatcataataagattctcagcaggctgccatata 494
           |||||||| |||||| |||||||||| ||||| || | || |||  ||||||||||||| 
Sbjct: 605 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 546

                                                                       
Query: 495 ctaactatatcaacccataatgctttgaagaagatccgtccagtaaagcgcaatccccag 554
           || |  || || | ||||| |||||||||||| ||  | |||||||| || |   |||||
Sbjct: 545 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 486

                                                                       
Query: 555 aataaacttttgtaattgtcaatgccctcaaatttattgaaagggtctctgacgacaata 614
           ||||  |||||||| || ||||| |||   || ||||||| ||| ||| ||| |||||||
Sbjct: 485 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 426

                                         
Query: 615 tcatctctgtatatatcgaagctgggctcc 644
           ||||||||||| |||| |||||||||||||
Sbjct: 425 tcatctctgtagatatggaagctgggctcc 396

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>dbj|AK066642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I22, full
           insert sequence
          Length = 1331

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 304/390 (77%)
 Strand = Plus / Minus

                                                                       
Query: 255 gttggttttggagttgttgggcagctaagtgatctgactagctcttgaacagacaggacc 314
           |||||||||||||| | |||||| | |||||||||||  ||||||   || | || ||||
Sbjct: 900 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 841

                                                                       
Query: 315 ttgtactttgtaggtgggttcgtagcaatgttatgtaccttgtgctcatagatcttcccg 374
           ||  | || || |||| |||| | ||||  ||||  ||||| ||||||||||||||||| 
Sbjct: 840 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 781

                                                                       
Query: 375 ttcctgtcgagtttgtacacggaggcgccgtcaaagcgggcatgaccatcccatgggacc 434
           ||| |||| |  || ||| | |||| ||| ||||| | | || | |||||| |  | || 
Sbjct: 780 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 721

                                                                       
Query: 435 ctaggaataccatgggcaatccagcgaatcataataagattctcagcaggctgccatata 494
           |||||||| |||||| |||||||||| ||||| || | || |||  ||||||||||||| 
Sbjct: 720 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 661

                                                                       
Query: 495 ctaactatatcaacccataatgctttgaagaagatccgtccagtaaagcgcaatccccag 554
           || |  || || | ||||| |||||||||||| ||  | |||||||| || |   |||||
Sbjct: 660 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 601

                                                                       
Query: 555 aataaacttttgtaattgtcaatgccctcaaatttattgaaagggtctctgacgacaata 614
           ||||  |||||||| || ||||| |||   || ||||||| ||| ||| ||| |||||||
Sbjct: 600 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 541

                                         
Query: 615 tcatctctgtatatatcgaagctgggctcc 644
           ||||||||||| |||| |||||||||||||
Sbjct: 540 tcatctctgtagatatggaagctgggctcc 511

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>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
             complete sequence
          Length = 148348

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 285/369 (77%)
 Strand = Plus / Minus

                                                                         
Query: 255   gttggttttggagttgttgggcagctaagtgatctgactagctcttgaacagacaggacc 314
             |||||||||||||| | |||||| | |||||||||||  ||||||   || | || ||||
Sbjct: 37673 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 37614

                                                                         
Query: 315   ttgtactttgtaggtgggttcgtagcaatgttatgtaccttgtgctcatagatcttcccg 374
             ||  | || || |||| |||| | ||||  ||||  ||||| ||||||||||||||||| 
Sbjct: 37613 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 37554

                                                                         
Query: 375   ttcctgtcgagtttgtacacggaggcgccgtcaaagcgggcatgaccatcccatgggacc 434
             ||| |||| |  || ||| | |||| ||| ||||| | | || | |||||| |  | || 
Sbjct: 37553 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 37494

                                                                         
Query: 435   ctaggaataccatgggcaatccagcgaatcataataagattctcagcaggctgccatata 494
             |||||||| |||||| |||||||||| ||||| || | || |||  ||||||||||||| 
Sbjct: 37493 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 37434

                                                                         
Query: 495   ctaactatatcaacccataatgctttgaagaagatccgtccagtaaagcgcaatccccag 554
             || |  || || | ||||| |||||||||||| ||  | |||||||| || |   |||||
Sbjct: 37433 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 37374

                                                                         
Query: 555   aataaacttttgtaattgtcaatgccctcaaatttattgaaagggtctctgacgacaata 614
             ||||  |||||||| || ||||| |||   || ||||||| ||| ||| ||| |||||||
Sbjct: 37373 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 37314

                      
Query: 615   tcatctctg 623
             |||||||||
Sbjct: 37313 tcatctctg 37305

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 285/369 (77%)
 Strand = Plus / Minus

                                                                           
Query: 255     gttggttttggagttgttgggcagctaagtgatctgactagctcttgaacagacaggacc 314
               |||||||||||||| | |||||| | |||||||||||  ||||||   || | || ||||
Sbjct: 7082824 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 7082765

                                                                           
Query: 315     ttgtactttgtaggtgggttcgtagcaatgttatgtaccttgtgctcatagatcttcccg 374
               ||  | || || |||| |||| | ||||  ||||  ||||| ||||||||||||||||| 
Sbjct: 7082764 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 7082705

                                                                           
Query: 375     ttcctgtcgagtttgtacacggaggcgccgtcaaagcgggcatgaccatcccatgggacc 434
               ||| |||| |  || ||| | |||| ||| ||||| | | || | |||||| |  | || 
Sbjct: 7082704 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 7082645

                                                                           
Query: 435     ctaggaataccatgggcaatccagcgaatcataataagattctcagcaggctgccatata 494
               |||||||| |||||| |||||||||| ||||| || | || |||  ||||||||||||| 
Sbjct: 7082644 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 7082585

                                                                           
Query: 495     ctaactatatcaacccataatgctttgaagaagatccgtccagtaaagcgcaatccccag 554
               || |  || || | ||||| |||||||||||| ||  | |||||||| || |   |||||
Sbjct: 7082584 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 7082525

                                                                           
Query: 555     aataaacttttgtaattgtcaatgccctcaaatttattgaaagggtctctgacgacaata 614
               ||||  |||||||| || ||||| |||   || ||||||| ||| ||| ||| |||||||
Sbjct: 7082524 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 7082465

                        
Query: 615     tcatctctg 623
               |||||||||
Sbjct: 7082464 tcatctctg 7082456

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>ref|XM_473869.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 354 ttgtgctcatagatcttcccgttcctgtcga 384
           |||||||| || |||||||||||||||||||
Sbjct: 611 ttgtgctcgtaaatcttcccgttcctgtcga 581

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>gb|AC091463.9| Mus musculus chromosome 16, clone RP23-301D7, complete sequence
          Length = 232419

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 21     tgtctctgtacatatatacaaca 43
              |||||||||||||||||||||||
Sbjct: 197749 tgtctctgtacatatatacaaca 197771

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>gb|AC132349.3| Mus musculus BAC clone RP24-82B7 from chromosome 16, complete sequence
          Length = 216783

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 21     tgtctctgtacatatatacaaca 43
              |||||||||||||||||||||||
Sbjct: 174500 tgtctctgtacatatatacaaca 174478

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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 354    ttgtgctcatagatcttcccgttcctgtcga 384
              |||||||| || |||||||||||||||||||
Sbjct: 112284 ttgtgctcgtaaatcttcccgttcctgtcga 112314

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 354      ttgtgctcatagatcttcccgttcctgtcga 384
                |||||||| || |||||||||||||||||||
Sbjct: 31130203 ttgtgctcgtaaatcttcccgttcctgtcga 31130233

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>dbj|AK065653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037F04, full
           insert sequence
          Length = 1295

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 354 ttgtgctcatagatcttcccgttcctgtcga 384
           |||||||| || |||||||||||||||||||
Sbjct: 814 ttgtgctcgtaaatcttcccgttcctgtcga 784

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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 300   tgaacagacaggaccttgtactt 322
             |||||||||||||||||||||||
Sbjct: 67641 tgaacagacaggaccttgtactt 67663

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>emb|CR555290.8| Zebrafish DNA sequence from clone DKEYP-10A10 in linkage group 10,
             complete sequence
          Length = 83568

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 502   tatcaacccataatgctttgaa 523
             ||||||||||||||||||||||
Sbjct: 41763 tatcaacccataatgctttgaa 41784

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>gb|AY107152.1| Zea mays PCO111123 mRNA sequence
          Length = 686

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 355 tgtgctcatagatcttcccgttcctgtcga 384
           ||||||| ||||| ||||||||||||||||
Sbjct: 262 tgtgctcgtagattttcccgttcctgtcga 233

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>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence
          Length = 168581

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 126  gacccacactatccttctctgagat 150
            |||||||||||||||| ||||||||
Sbjct: 4248 gacccacactatccttttctgagat 4272

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>gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, complete sequence
          Length = 156603

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 126  gacccacactatccttctctgagat 150
            |||||||||||||||| ||||||||
Sbjct: 1646 gacccacactatccttttctgagat 1622

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>emb|AL590550.8| Human DNA sequence from clone RP11-398B19 on chromosome 6, complete
             sequence
          Length = 60406

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 557   taaacttttgtaattgtcaat 577
             |||||||||||||||||||||
Sbjct: 46211 taaacttttgtaattgtcaat 46191

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>gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene, complete cds
          Length = 10700

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 126  gacccacactatccttctctgagat 150
            |||||||||||||||| ||||||||
Sbjct: 6449 gacccacactatccttttctgagat 6425

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>gb|AC008250.23| Homo sapiens 12 BAC RP11-729I10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 141132

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   aagtaagttggttttggagtt 269
             |||||||||||||||||||||
Sbjct: 82345 aagtaagttggttttggagtt 82325

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>gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164161

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 260    ttttggagttgttgggcagct 280
              |||||||||||||||||||||
Sbjct: 141920 ttttggagttgttgggcagct 141940

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>emb|AL929311.8| Mouse DNA sequence from clone RP23-291N2 on chromosome 2, complete
            sequence
          Length = 103282

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 259  gttttggagttgttgggcagc 279
            |||||||||||||||||||||
Sbjct: 2661 gttttggagttgttgggcagc 2641

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>ref|NM_188240.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2019

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 606 acgacaatatcatctctgta 625
           ||||||||||||||||||||
Sbjct: 150 acgacaatatcatctctgta 169

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>ref|NM_015124.2| Homo sapiens death-inducing-protein (DIP), mRNA
          Length = 4316

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  acagacaggaccttgtactt 322
            ||||||||||||||||||||
Sbjct: 1619 acagacaggaccttgtactt 1600

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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 11     tgtataaatctgtctctgtacatatata 38
              |||||| |||||| ||||||||||||||
Sbjct: 206155 tgtatatatctgtatctgtacatatata 206182

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>gb|AC053466.6| Homo sapiens chromosome 10 clone RP11-491G3, complete sequence
          Length = 172885

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    aacagttatgattcaatact 59
             ||||||||||||||||||||
Sbjct: 26082 aacagttatgattcaatact 26063

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>gb|AC138580.19| Medicago truncatula clone mth2-14e15, complete sequence
          Length = 164457

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tacaatacaacaaaaaaggt 102
             ||||||||||||||||||||
Sbjct: 10631 tacaatacaacaaaaaaggt 10650

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>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    tggtaactacaatacaacaaaaaa 99
             ||||||||||||||||| ||||||
Sbjct: 36846 tggtaactacaatacaaaaaaaaa 36869

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>emb|CR388093.11| Zebrafish DNA sequence from clone CH211-279L9 in linkage group 2,
              complete sequence
          Length = 153673

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    tctgagatttgctagagaaa 162
              ||||||||||||||||||||
Sbjct: 129212 tctgagatttgctagagaaa 129231

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>gb|AC091549.11| Homo sapiens chromosome 8, clone RP11-343D20, complete sequence
          Length = 179187

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    cacactatccttctctgagatttg 153
              |||| |||||||||||||||||||
Sbjct: 136135 cacattatccttctctgagatttg 136158

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>gb|AC068185.9| Homo sapiens chromosome 11, clone RP11-330I10, complete sequence
          Length = 174189

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aacagttatgattcaatact 59
              ||||||||||||||||||||
Sbjct: 137024 aacagttatgattcaatact 137043

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>gb|AC087713.4| Homo sapiens chromosome 8, clone RP11-731D15, complete sequence
          Length = 151348

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   cacactatccttctctgagatttg 153
             |||| |||||||||||||||||||
Sbjct: 33486 cacattatccttctctgagatttg 33509

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>gb|AC009866.6| Homo sapiens chromosome 11, clone RP11-61E7, complete sequence
          Length = 177564

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aacagttatgattcaatact 59
              ||||||||||||||||||||
Sbjct: 138027 aacagttatgattcaatact 138008

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>gb|BC080189.1| Homo sapiens death-inducing-protein, mRNA (cDNA clone
           IMAGE:6013758), complete cds
          Length = 2843

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 acagacaggaccttgtactt 322
           ||||||||||||||||||||
Sbjct: 245 acagacaggaccttgtactt 226

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>gb|AC017037.10|AC017037 Homo sapiens BAC clone RP11-312A15 from 4, complete sequence
          Length = 186106

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  agacccacactatccttctc 144
            ||||||||||||||||||||
Sbjct: 4189 agacccacactatccttctc 4170

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>dbj|AB018310.2| Homo sapiens mRNA for KIAA0767 protein, partial cds
          Length = 4481

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  acagacaggaccttgtactt 322
            ||||||||||||||||||||
Sbjct: 1793 acagacaggaccttgtactt 1774

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>gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete sequence
          Length = 139631

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 11    tgtataaatctgtctctgtacatatata 38
             |||||| |||||| ||||||||||||||
Sbjct: 16649 tgtatatatctgtatctgtacatatata 16676

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>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498B01
          Length = 146812

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 606   acgacaatatcatctctgta 625
             ||||||||||||||||||||
Sbjct: 94471 acgacaatatcatctctgta 94490

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>emb|CR456470.1| Homo sapiens dJ439F8.1 full length open reading frame (ORF) cDNA
            clone (cDNA clone C22ORF:pGEM.dJ439F8.1)
          Length = 1909

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  acagacaggaccttgtactt 322
            ||||||||||||||||||||
Sbjct: 1619 acagacaggaccttgtactt 1600


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,722,467
Number of Sequences: 3902068
Number of extensions: 5722467
Number of successful extensions: 102253
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102060
Number of HSP's gapped (non-prelim): 185
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result