ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17k02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complet... 46 0.14
2gb|AC103600.8| Mus musculus chromosome 1, clone RP23-247F18, com... 44 0.54
3gb|AF262042.1|T15F17 Arabidopsis thaliana BAC T15F17 44 0.54
4dbj|AB046433.1| Arabidopsis thaliana DNA, chromosome 5 centromer... 44 0.54
5gb|AC073561.4| Mus musculus strain C57BL/6J chromosome 12 clone ... 42 2.1
6gb|AC080033.10| Homo sapiens chromosome 8, clone RP11-885J16, co... 42 2.1
7gb|AC087856.6| Homo sapiens chromosome 8, clone RP11-4K16, compl... 42 2.1
8dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.1
9gb|AC009514.2|AC009514 Homo sapiens chromosome 8 clone RP11-4K16... 42 2.1
10tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 42 2.1
11emb|AL953852.6| Zebrafish DNA sequence from clone CH211-213C6 in... 42 2.1
12gb|AY684169.1| Homo sapiens REV3-like, catalytic subunit of DNA ... 40 8.5
13gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosom... 40 8.5
14gb|AC115037.16| Mus musculus chromosome 12, clone RP24-276C17, c... 40 8.5
15ref|XM_746130.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.5
16gb|AC122925.3| Mus musculus BAC clone RP23-9O19 from 1, complete... 40 8.5
17gb|AC117240.4| Mus musculus BAC clone RP24-140F3 from 12, comple... 40 8.5
18gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, c... 40 8.5
19gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence 40 8.5
20gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete se... 40 8.5
21gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome... 40 8.5
22gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete s... 40 8.5
23emb|AL451146.7| Human DNA sequence from clone RP11-510K18 on chr... 40 8.5
24emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chr... 40 8.5
25emb|AL080317.11|HSJ1112D6 Human DNA sequence from clone RP5-1112... 40 8.5
26emb|AL031056.1|HS111D6 Human DNA sequence from clone RP1-111D6 o... 40 8.5
27emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ... 40 8.5
28gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, co... 40 8.5
29gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell... 40 8.5
30gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell... 40 8.5
31gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, com... 40 8.5
32gb|AC099756.2| Homo sapiens chromosome 1 clone RP11-180A14, comp... 40 8.5
33gb|AF190404.1|AF190404 Drosophila virilis Prospero (pros) gene, ... 40 8.5
34emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in... 40 8.5
35emb|BX890540.5| Zebrafish DNA sequence from clone DKEY-211C3 in ... 40 8.5
36dbj|AP006547.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.5
37gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 ... 40 8.5
38gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer... 40 8.5
39dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.5
40dbj|AP001929.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.5
41gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complet... 40 8.5 
>gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complete sequence
          Length = 192663

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 115   ggtgcctcaggcacagctcaagaatcaagaa 145
             |||||| |||||| |||||||||||||||||
Sbjct: 89219 ggtgccccaggcaaagctcaagaatcaagaa 89189
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>gb|AC103600.8| Mus musculus chromosome 1, clone RP23-247F18, complete sequence
          Length = 199808

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 536    ttccaaggtggaggcaaggcat 557
              ||||||||||||||||||||||
Sbjct: 175103 ttccaaggtggaggcaaggcat 175082
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>gb|AF262042.1|T15F17 Arabidopsis thaliana BAC T15F17
          Length = 68352

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 285   ttcagtattcaatttcttttcttgat 310
             ||||||||||||||||| ||||||||
Sbjct: 14505 ttcagtattcaatttctgttcttgat 14480
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>dbj|AB046433.1| Arabidopsis thaliana DNA, chromosome 5 centromere region,
            clone:F11C12
          Length = 116966

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 285  ttcagtattcaatttcttttcttgat 310
            ||||||||||||||||| ||||||||
Sbjct: 6164 ttcagtattcaatttctgttcttgat 6139
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>gb|AC073561.4| Mus musculus strain C57BL/6J chromosome 12 clone RP23-18L19, complete
             sequence
          Length = 184953

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   tttctcagcatgtgattcttt 437
             |||||||||||||||||||||
Sbjct: 44452 tttctcagcatgtgattcttt 44472
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>gb|AC080033.10| Homo sapiens chromosome 8, clone RP11-885J16, complete sequence
          Length = 141262

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 494    caatacaaataggatctaaaa 514
              |||||||||||||||||||||
Sbjct: 119068 caatacaaataggatctaaaa 119088
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>gb|AC087856.6| Homo sapiens chromosome 8, clone RP11-4K16, complete sequence
          Length = 169060

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 494    caatacaaataggatctaaaa 514
              |||||||||||||||||||||
Sbjct: 151473 caatacaaataggatctaaaa 151453
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>dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6B6
          Length = 37511

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 507   atctaaaaacttgattggactaaat 531
             |||||||||||||||| ||||||||
Sbjct: 33033 atctaaaaacttgatttgactaaat 33057
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>gb|AC009514.2|AC009514 Homo sapiens chromosome 8 clone RP11-4K16, complete sequence
          Length = 169059

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 494    caatacaaataggatctaaaa 514
              |||||||||||||||||||||
Sbjct: 151472 caatacaaataggatctaaaa 151452
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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 417     tttctcagcatgtgattcttt 437
               |||||||||||||||||||||
Sbjct: 1622169 tttctcagcatgtgattcttt 1622149
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>emb|AL953852.6| Zebrafish DNA sequence from clone CH211-213C6 in linkage group 6,
             complete sequence
          Length = 200882

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 296   atttcttttcttgatcaaaat 316
             |||||||||||||||||||||
Sbjct: 56706 atttcttttcttgatcaaaat 56686
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>gb|AY684169.1| Homo sapiens REV3-like, catalytic subunit of DNA polymerase zeta
             (yeast) (REV3L) gene, complete cds
          Length = 188355

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   acatctttttcagtattcaa 296
             ||||||||||||||||||||
Sbjct: 95100 acatctttttcagtattcaa 95081
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>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence
          Length = 186452

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 519    gattggactaaatgtcattccaag 542
              ||||||| ||||||||||||||||
Sbjct: 156534 gattggattaaatgtcattccaag 156557
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>gb|AC115037.16| Mus musculus chromosome 12, clone RP24-276C17, complete sequence
          Length = 214848

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    caagaatcaagaatcataag 152
              ||||||||||||||||||||
Sbjct: 200316 caagaatcaagaatcataag 200297
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>ref|XM_746130.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g13470)
           partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 ttcttgatcaaaatgatccc 322
           ||||||||||||||||||||
Sbjct: 351 ttcttgatcaaaatgatccc 332
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>gb|AC122925.3| Mus musculus BAC clone RP23-9O19 from 1, complete sequence
          Length = 256751

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ccatgaaggccagcagtggg 112
             ||||||||||||||||||||
Sbjct: 95627 ccatgaaggccagcagtggg 95646
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>gb|AC117240.4| Mus musculus BAC clone RP24-140F3 from 12, complete sequence
          Length = 171990

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    caagaatcaagaatcataag 152
              ||||||||||||||||||||
Sbjct: 110918 caagaatcaagaatcataag 110937
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>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence
          Length = 256720

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 296   atttcttttcttgatcaaaatgat 319
             |||||||||||| |||||||||||
Sbjct: 17598 atttcttttctttatcaaaatgat 17575
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>gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence
          Length = 200062

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ttttcaacgaaacatctttt 285
              ||||||||||||||||||||
Sbjct: 175948 ttttcaacgaaacatctttt 175967
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>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence
          Length = 121144

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   ttctccaaaaatccaagcac 588
             ||||||||||||||||||||
Sbjct: 64083 ttctccaaaaatccaagcac 64064
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>gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome 1, complete sequence
          Length = 182270

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 415    attttctcagcatgtgattctttt 438
              ||||||| ||||||||||||||||
Sbjct: 128755 attttcttagcatgtgattctttt 128732
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>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence
          Length = 142154

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   ttctccaaaaatccaagcac 588
             ||||||||||||||||||||
Sbjct: 64087 ttctccaaaaatccaagcac 64068
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>emb|AL451146.7| Human DNA sequence from clone RP11-510K18 on chromosome 10 Contains a
             serine/threonine protein kinase pseudogene, complete
             sequence
          Length = 200891

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 284   tttcagtattcaatttcttttctt 307
             ||||||||||| ||||||||||||
Sbjct: 48836 tttcagtattccatttcttttctt 48813
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>emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chromosome 1 Contains the 5'
              end of a novel gene (KIAA1078) and the 3' end of ribosomal
              protein L34 pseudogene 1 (RPL34P1) and a CpG island,
              complete sequence
          Length = 154879

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    ttgtagtagaaatgtgcttt 375
              ||||||||||||||||||||
Sbjct: 132147 ttgtagtagaaatgtgcttt 132166
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>emb|AL080317.11|HSJ1112D6 Human DNA sequence from clone RP5-1112D6 on chromosome 6q21-22.2,
              complete sequence
          Length = 135305

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    acatctttttcagtattcaa 296
              ||||||||||||||||||||
Sbjct: 133795 acatctttttcagtattcaa 133814
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>emb|AL031056.1|HS111D6 Human DNA sequence from clone RP1-111D6 on chromosome 6q24-25.2
             Contains a pseudogene similar to peripheral myelin protein
             2 (M-FABP) (PMP2)(P2, MP2, FABP8) and two novel genes,
             complete sequence
          Length = 128330

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   ggcaggtgcctcaggcacagctca 134
             |||||||||||||| |||||||||
Sbjct: 62253 ggcaggtgcctcagacacagctca 62276
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>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8,
             complete sequence
          Length = 211489

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   agacaaagtttggtagcatc 260
             ||||||||||||||||||||
Sbjct: 37201 agacaaagtttggtagcatc 37220
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>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    atcaaaatgatcccagcata 328
              ||||||||||||||||||||
Sbjct: 153050 atcaaaatgatcccagcata 153031
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>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    caagtttctagttctcagac 244
              ||||||||||||||||||||
Sbjct: 179478 caagtttctagttctcagac 179497
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>gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167977

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    caagtttctagttctcagac 244
              ||||||||||||||||||||
Sbjct: 145249 caagtttctagttctcagac 145230
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>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence
          Length = 243771

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 296    atttcttttcttgatcaaaatgat 319
              |||||||||||| |||||||||||
Sbjct: 192545 atttcttttctttatcaaaatgat 192522
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>gb|AC099756.2| Homo sapiens chromosome 1 clone RP11-180A14, complete sequence
          Length = 167302

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   ttgtagtagaaatgtgcttt 375
             ||||||||||||||||||||
Sbjct: 23104 ttgtagtagaaatgtgcttt 23123
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>gb|AF190404.1|AF190404 Drosophila virilis Prospero (pros) gene, upstream genomic sequence
          Length = 10344

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   gaaaatgattttgcaatggg 65
            ||||||||||||||||||||
Sbjct: 6790 gaaaatgattttgcaatggg 6771
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>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19,
             complete sequence
          Length = 166128

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   caattttctcagcatgtgat 432
             ||||||||||||||||||||
Sbjct: 24600 caattttctcagcatgtgat 24581
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>emb|BX890540.5| Zebrafish DNA sequence from clone DKEY-211C3 in linkage group 19,
              complete sequence
          Length = 170919

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    caattttctcagcatgtgat 432
              ||||||||||||||||||||
Sbjct: 156512 caattttctcagcatgtgat 156493
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>dbj|AP006547.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KPchr8gap13,
            complete sequence
          Length = 17935

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   aggccagcagtgggcaggtg 118
            ||||||||||||||||||||
Sbjct: 9220 aggccagcagtgggcaggtg 9239
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>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
             sequence
          Length = 307657

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   caagtttctagttctcagac 244
             ||||||||||||||||||||
Sbjct: 62845 caagtttctagttctcagac 62826
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>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 227467

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 519    gattggactaaatgtcattccaag 542
              ||||||| ||||||||||||||||
Sbjct: 194102 gattggattaaatgtcattccaag 194079
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>dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-956A8, complete
              sequence
          Length = 114109

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    attcaatttcttttcttgat 310
              ||||||||||||||||||||
Sbjct: 107578 attcaatttcttttcttgat 107597
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>dbj|AP001929.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640N11, complete
             sequence
          Length = 161547

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   attcaatttcttttcttgat 310
             ||||||||||||||||||||
Sbjct: 44402 attcaatttcttttcttgat 44421
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>gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complete sequence
          Length = 176981

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 415   attttctcagcatgtgattctttt 438
             ||||||| ||||||||||||||||
Sbjct: 20948 attttcttagcatgtgattctttt 20925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,817,118
Number of Sequences: 3902068
Number of extensions: 6817118
Number of successful extensions: 119883
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119774
Number of HSP's gapped (non-prelim): 109
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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