Clone Information

BLAST Search Result

Clone Name	rbags17j19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK072623.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	424	e-115
2	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
3	dbj\|AP005864.2\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
4	gb\|AY110656.1\| Zea mays CL44860_-1 mRNA sequence	129	1e-26
5	dbj\|AP005681.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	1e-05
6	emb\|AL391995.7\| Human DNA sequence from clone RP11-522N4 on chro...	48	0.038
7	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.60
8	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.60
9	dbj\|AP003684.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.60
10	dbj\|AP004730.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.60
11	dbj\|AP004731.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.60
12	tpe\|BN000667.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	44	0.60
13	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.60
14	emb\|AL713943.3\|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa...	44	0.60
15	emb\|AL731880.3\|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa...	44	0.60
16	gb\|AC131301.9\| Mus musculus chromosome 14, clone RP24-70B5, comp...	42	2.4
17	emb\|CR956632.4\| Pig DNA sequence from clone CH242-197B5 on chrom...	42	2.4
18	gb\|AC107670.10\| Mus musculus chromosome 14, clone RP23-54K15, co...	42	2.4
19	dbj\|AP000464.2\| Homo sapiens genomic DNA, chromosome 11q, clone:...	42	2.4
20	dbj\|AP002991.3\| Homo sapiens genomic DNA, chromosome 11 clone:CT...	42	2.4
21	dbj\|AB017652.1\| Homo sapiens genomic DNA, chromosome 11q23.2, cl...	42	2.4
22	gb\|AC121147.8\| Mus musculus chromosome 3, clone RP24-369O15, com...	40	9.3
23	gb\|AC155264.2\| Mus musculus BAC clone RP23-281B4 from chromosome...	40	9.3
24	gb\|AC164170.7\| Mus musculus 10 BAC RP24-419C12 (Roswell Park Can...	40	9.3
25	gb\|AC102285.7\| Mus musculus chromosome 19, clone RP24-329P13, co...	40	9.3
26	gb\|AC183544.3\| Pan troglodytes BAC clone CH251-284N17 from chrom...	40	9.3
27	ref\|XM_543381.2\| PREDICTED: Canis familiaris similar to B-cell C...	40	9.3
28	ref\|XM_854798.1\| PREDICTED: Canis familiaris similar to B-cell C...	40	9.3
29	ref\|XM_854760.1\| PREDICTED: Canis familiaris similar to B-cell C...	40	9.3
30	gb\|AC129539.11\| Mus musculus chromosome 16, clone RP23-246B24, c...	40	9.3
31	emb\|CT025636.2\| Pan troglodytes chromosome X clone RP43-029M22 m...	40	9.3
32	emb\|CR954246.1\| Pseudoalteromonas haloplanktis str. TAC125 chrom...	40	9.3
33	gb\|AC103630.10\| Mus musculus chromosome 6, clone RP24-358D8, com...	40	9.3
34	gb\|AC026202.7\| Homo sapiens chromosome 3 clone RP11-572B2 map 3p...	40	9.3
35	emb\|AL772370.7\| Human DNA sequence from clone RP11-184B10 on chr...	40	9.3
36	emb\|AL732578.5\| Human DNA sequence from clone RP11-421K1 on chro...	40	9.3
37	gb\|AC117481.8\| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Canc...	40	9.3
38	gb\|AY308801.1\| Oyster mushroom isometric virus II RNA-dependent ...	40	9.3
39	emb\|CR378677.1\| Photobacterium profundum SS9 chromosome 2; segme...	40	9.3
40	gb\|AY158230.1\| Mus musculus strain 129/SvJ chromosome 10 clone 1...	40	9.3
41	gb\|AC124254.5\| Homo sapiens chromosome 18, clone RP11-176N18, co...	40	9.3
42	gb\|AC021064.20\| Homo sapiens 3 BAC RP11-49A15 (Roswell Park Canc...	40	9.3
43	gb\|AC010113.6\| Drosophila melanogaster 3L BAC RPCI98-10H23 (Rosw...	40	9.3
44	gb\|AC026402.3\| Homo sapiens chromosome 4 clone CTB-51E13, comple...	40	9.3
45	ref\|XM_625061.1\| PREDICTED: Apis mellifera similar to GTP-bindin...	40	9.3
46	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
47	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
48	gb\|AC026203.3\|AC026203 Homo sapiens chromosome 3 clone RP11-586C...	40	9.3
49	gb\|AC018821.4\|AC018821 Homo sapiens chromosome 3 clone RP11-294H...	40	9.3
50	gb\|AC026164.5\|AC026164 Homo sapiens chromosome 3 clone RP11-116K...	40	9.3
51	gb\|AC010885.8\| Homo sapiens BAC clone RP11-368K23 from 2, comple...	40	9.3
52	gb\|AC007252.2\| Homo sapiens BAC clone RP11-407F2 from 2, complet...	40	9.3
53	gb\|AC007021.3\|AC007021 Homo sapiens PAC clone RP6-155F9 from Xq2...	40	9.3
54	gb\|AC096709.19\| Homo sapiens chromosome 18, clone RP11-707P24, c...	40	9.3
55	dbj\|AP005308.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
56	dbj\|AP005575.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
57	dbj\|AB072276.1\| Ipomoea nil transposon Tpn106 DNA, complete sequ...	40	9.3
58	dbj\|AP004269.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
59	dbj\|AP006845.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
60	emb\|AL163209.2\|HS21C009 Homo sapiens chromosome 21 segment HS21C009	40	9.3
61	emb\|BX248120.7\| Zebrafish DNA sequence from clone CH211-160J6 in...	40	9.3
62	gb\|AC174640.3\| Mus musculus BAC clone RP24-576A3 from chromosome...	40	9.3
63	emb\|CT025155.9\| Mouse DNA sequence from clone RP23-228F18 on chr...	40	9.3
64	gb\|AE003558.3\| Drosophila melanogaster chromosome 3L, section 27...	40	9.3
65	gb\|CP000102.1\| Methanosphaera stadtmanae DSM 3091, complete genome	40	9.3
66	emb\|AJ009632.2\|HS265A22 Homo sapiens chromosome 21 PAC RPCIP704A...	40	9.3

>dbj|AK072623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131H02, full
           insert sequence
          Length = 1073

 Score =  424 bits (214), Expect = e-115
 Identities = 346/390 (88%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttatgcagcacccccatcccttcggtatggcatgaaccgatgatctttggacgcattctt 350
           ||||||| || | |||| |||||| ||||||||| | |||||||||||||| || |||||
Sbjct: 844 ttatgcaccatctccattccttcgatatggcatgtagcgatgatctttggaggcgttctt 785

                                                                       
Query: 351 cttgcgtcgcttctccataaaggaatcaagctttcctgcctccttgagctcattgtactt 410
           | | || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 784 cctccgccgcttctccatgaaggcatcaagctttcctgcctccttgagctcattgtactt 725

                                                                       
Query: 411 atccatcaacttcctttcacgaatttcagatttcttcagataatatggtcgttttccggc 470
            | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | 
Sbjct: 724 gttcatcaacttcctttcacgaatttcagatttcttcagataatatggtcgctttccagt 665

                                                                       
Query: 471 ctttgctgcttccctctctttcttaatatgtcctctcagaatttctgattcaacgttctt 530
           ||||| ||||||||||||||||||||||||| | | |||||| ||||| |||||||||||
Sbjct: 664 ctttgttgcttccctctctttcttaatatgttcacgcagaatctctgactcaacgttctt 605

                                                                       
Query: 531 ctgaggattagacctcaactgcttatcaatccaggtgatttgattcttcacttcttcaat 590
           || ||||| ||||||||| || ||||||||||| |||||  || |||||| |||||||||
Sbjct: 604 cttaggatgagacctcaattgtttatcaatccaagtgatgcgactcttcatttcttcaat 545

                                                                       
Query: 591 ggcattagggtccttcaatttcttaatcgacttttggagtttctccttttctgcaggcag 650
           |||||||||||||||  ||||||||||||| ||||| |||||||| || |||||||| ||
Sbjct: 544 ggcattagggtcctttgatttcttaatcgatttttgtagtttctctttctctgcaggaag 485

                                         
Query: 651 atcatgatcgaataagaaattgtatctttt 680
            |||| ||| ||||||||||||||||||||
Sbjct: 484 ttcatcatcaaataagaaattgtatctttt 455

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                            
Query: 440      atttcttcagataatatggtcgttttccggcctttgctgcttccctctctttcttaatat 499
                |||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||
Sbjct: 20220612 atttcttcagataatatggtcgctttccagtctttgttgcttccctctctttcttaatat 20220553

                                                                          
Query: 500      gtcctctcagaatttctgattcaacgttcttctgaggattagacctcaactgcttatc 557
                || | | |||||| ||||| ||||||||||||| ||||| ||||||||| || |||||
Sbjct: 20220552 gttcacgcagaatctctgactcaacgttcttcttaggatgagacctcaattgtttatc 20220495



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                            
Query: 291      ttatgcagcacccccatcccttcggtatggcatgaaccgatgatctttggacgcattctt 350
                ||||||| || | |||| |||||| ||||||||| | |||||||||||||| || |||||
Sbjct: 20220954 ttatgcaccatctccattccttcgatatggcatgtagcgatgatctttggaggcgttctt 20220895

                                                            
Query: 351      cttgcgtcgcttctccataaaggaatcaagctttcctgcctcct 394
                | | || ||||||||||| |||| ||||||||||||||||||||
Sbjct: 20220894 cctccgccgcttctccatgaaggcatcaagctttcctgcctcct 20220851



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                            
Query: 557      caatccaggtgatttgattcttcacttcttcaatggcattagggtccttcaatttcttaa 616
                ||||||| |||||  || |||||| ||||||||||||||||||||||||  |||||||||
Sbjct: 20219887 caatccaagtgatgcgactcttcatttcttcaatggcattagggtcctttgatttcttaa 20219828

                                  
Query: 617      tcgacttttggagtttct 634
                |||| ||||| |||||||
Sbjct: 20219827 tcgatttttgtagtttct 20219810



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                                
Query: 392      ccttgagctcattgtacttatccatcaacttcctttcacgaatttcag 439
                ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 20220767 ccttgagctcattgtacttgttcatcaacttcctttcacgaatttcag 20220720



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 640      tctgcaggcagatcatgatcgaataagaaattgtatctttt 680
                |||||||| || |||| ||| ||||||||||||||||||||
Sbjct: 20219708 tctgcaggaagttcatcatcaaataagaaattgtatctttt 20219668



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 129      aactataaatatatggtcca 148
                ||||||||||||||||||||
Sbjct: 16682421 aactataaatatatggtcca 16682440

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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0047P18
          Length = 169128

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                          
Query: 440    atttcttcagataatatggtcgttttccggcctttgctgcttccctctctttcttaatat 499
              |||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||
Sbjct: 114112 atttcttcagataatatggtcgctttccagtctttgttgcttccctctctttcttaatat 114053

                                                                        
Query: 500    gtcctctcagaatttctgattcaacgttcttctgaggattagacctcaactgcttatc 557
              || | | |||||| ||||| ||||||||||||| ||||| ||||||||| || |||||
Sbjct: 114052 gttcacgcagaatctctgactcaacgttcttcttaggatgagacctcaattgtttatc 113995



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                          
Query: 291    ttatgcagcacccccatcccttcggtatggcatgaaccgatgatctttggacgcattctt 350
              ||||||| || | |||| |||||| ||||||||| | |||||||||||||| || |||||
Sbjct: 114454 ttatgcaccatctccattccttcgatatggcatgtagcgatgatctttggaggcgttctt 114395

                                                          
Query: 351    cttgcgtcgcttctccataaaggaatcaagctttcctgcctcct 394
              | | || ||||||||||| |||| ||||||||||||||||||||
Sbjct: 114394 cctccgccgcttctccatgaaggcatcaagctttcctgcctcct 114351



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                          
Query: 557    caatccaggtgatttgattcttcacttcttcaatggcattagggtccttcaatttcttaa 616
              ||||||| |||||  || |||||| ||||||||||||||||||||||||  |||||||||
Sbjct: 113387 caatccaagtgatgcgactcttcatttcttcaatggcattagggtcctttgatttcttaa 113328

                                
Query: 617    tcgacttttggagtttct 634
              |||| ||||| |||||||
Sbjct: 113327 tcgatttttgtagtttct 113310



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                              
Query: 392    ccttgagctcattgtacttatccatcaacttcctttcacgaatttcag 439
              ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 114267 ccttgagctcattgtacttgttcatcaacttcctttcacgaatttcag 114220



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 640    tctgcaggcagatcatgatcgaataagaaattgtatctttt 680
              |||||||| || |||| ||| ||||||||||||||||||||
Sbjct: 113208 tctgcaggaagttcatcatcaaataagaaattgtatctttt 113168

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>gb|AY110656.1| Zea mays CL44860_-1 mRNA sequence
          Length = 608

 Score =  129 bits (65), Expect = 1e-26
 Identities = 86/93 (92%)
 Strand = Plus / Plus

                                                                       
Query: 375 atcaagctttcctgcctccttgagctcattgtacttatccatcaacttcctttcacgaat 434
           ||||||||||||||||||||||||||| |||||||| | ||||| ||||||||| |||| 
Sbjct: 331 atcaagctttcctgcctccttgagctcgttgtacttgttcatcagcttcctttcgcgaag 390

                                            
Query: 435 ttcagatttcttcagataatatggtcgttttcc 467
           |||||||||||||||||| ||||||||||||||
Sbjct: 391 ttcagatttcttcagatagtatggtcgttttcc 423



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Plus

                                                                       
Query: 511 atttctgattcaacgttcttctgaggattagacctcaactgcttatcaatccaggtgatt 570
           ||||| ||||||||||||||  |||||| |||| ||||||||||||||||||| ||||  
Sbjct: 467 atttccgattcaacgttctttggaggatgagacttcaactgcttatcaatccacgtgaca 526

                                                           
Query: 571 tgattcttcacttcttcaatggcattagggtccttcaatttcttaatc 618
            || |||||| |||| |||||||||  ||||||||  |||||||||||
Sbjct: 527 cgactcttcatttctccaatggcatctgggtccttagatttcttaatc 574



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 312 tcggtatggcatgaaccgatgatctttgga 341
           ||||||||||||||||||||||||||||||
Sbjct: 268 tcggtatggcatgaaccgatgatctttgga 297

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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OJ1439_F07
          Length = 153743

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttatgcagcacccccatcccttcggtatggcatgaaccgatgatctttggacgcattctt 350
           ||||||| || | |||| |||||| ||||||||| | |||||||||||||| || |||||
Sbjct: 81  ttatgcaccatctccattccttcgatatggcatgtagcgatgatctttggaggcgttctt 22

                             
Query: 351 cttgcgtcgcttctccat 368
           | | || |||||||||||
Sbjct: 21  cctccgccgcttctccat 4

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>emb|AL391995.7| Human DNA sequence from clone RP11-522N4 on chromosome 13, complete
             sequence
          Length = 178920

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 572   gattcttcacttcttcaatggcattagg 599
             ||||||||||||||||||||| ||||||
Sbjct: 77291 gattcttcacttcttcaatggaattagg 77318

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 478      gcttccctctctttcttaatat 499
                ||||||||||||||||||||||
Sbjct: 20930094 gcttccctctctttcttaatat 20930073

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 478      gcttccctctctttcttaatat 499
                ||||||||||||||||||||||
Sbjct: 20346911 gcttccctctctttcttaatat 20346932



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 478      gcttccctctctttcttaatat 499
                ||||||||||||||||||||||
Sbjct: 18978956 gcttccctctctttcttaatat 18978935

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>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0485D10
          Length = 147464

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 478    gcttccctctctttcttaatat 499
              ||||||||||||||||||||||
Sbjct: 144521 gcttccctctctttcttaatat 144500

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>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0009J19
          Length = 156988

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 478   gcttccctctctttcttaatat 499
             ||||||||||||||||||||||
Sbjct: 71626 gcttccctctctttcttaatat 71605

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>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0016D02
          Length = 157822

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 478   gcttccctctctttcttaatat 499
             ||||||||||||||||||||||
Sbjct: 70306 gcttccctctctttcttaatat 70327

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>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for
            class III peroxidase 138 precursor, exons 1-4
          Length = 9140

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 478  gcttccctctctttcttaatat 499
            ||||||||||||||||||||||
Sbjct: 5231 gcttccctctctttcttaatat 5252

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 478      gcttccctctctttcttaatat 499
                ||||||||||||||||||||||
Sbjct: 20856302 gcttccctctctttcttaatat 20856281

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>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 182172

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 478   gcttccctctctttcttaatat 499
             ||||||||||||||||||||||
Sbjct: 15578 gcttccctctctttcttaatat 15557

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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 478   gcttccctctctttcttaatat 499
             ||||||||||||||||||||||
Sbjct: 28901 gcttccctctctttcttaatat 28922

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>gb|AC131301.9| Mus musculus chromosome 14, clone RP24-70B5, complete sequence
          Length = 236224

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 439   gatttcttcagataatatggt 459
             |||||||||||||||||||||
Sbjct: 71042 gatttcttcagataatatggt 71022

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>emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chromosome 7, complete
             sequence
          Length = 186089

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 503   ctctcagaatttctgattcaa 523
             |||||||||||||||||||||
Sbjct: 48498 ctctcagaatttctgattcaa 48518

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>gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, complete sequence
          Length = 202048

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 439    gatttcttcagataatatggt 459
              |||||||||||||||||||||
Sbjct: 161852 gatttcttcagataatatggt 161832

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>dbj|AP000464.2| Homo sapiens genomic DNA, chromosome 11q, clone:P221, complete sequence
          Length = 68582

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 629   gtttctccttttctgcaggca 649
             |||||||||||||||||||||
Sbjct: 31070 gtttctccttttctgcaggca 31090

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>dbj|AP002991.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-774J1, complete
             sequence
          Length = 167901

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 629   gtttctccttttctgcaggca 649
             |||||||||||||||||||||
Sbjct: 53717 gtttctccttttctgcaggca 53737

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>dbj|AB017652.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:P221, complete
             sequence
          Length = 68582

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 629   gtttctccttttctgcaggca 649
             |||||||||||||||||||||
Sbjct: 37513 gtttctccttttctgcaggca 37493

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>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence
          Length = 178352

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 661   aataagaaattgtatctttt 680
             ||||||||||||||||||||
Sbjct: 73806 aataagaaattgtatctttt 73787

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>gb|AC155264.2| Mus musculus BAC clone RP23-281B4 from chromosome 16, complete sequence
          Length = 199531

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 586    tcaatggcattagggtcctt 605
              ||||||||||||||||||||
Sbjct: 139512 tcaatggcattagggtcctt 139531

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>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158496

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    attaaagcactagatgaaac 68
             ||||||||||||||||||||
Sbjct: 80523 attaaagcactagatgaaac 80542

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>gb|AC102285.7| Mus musculus chromosome 19, clone RP24-329P13, complete sequence
          Length = 174894

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 634    tccttttctgcaggcagatc 653
              ||||||||||||||||||||
Sbjct: 113125 tccttttctgcaggcagatc 113144

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>gb|AC183544.3| Pan troglodytes BAC clone CH251-284N17 from chromosome x, complete
              sequence
          Length = 161059

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 385    cctgcctccttgagctcattgtacttatccat 416
              ||||||||||| |||||||||| |||| ||||
Sbjct: 156092 cctgcctccttcagctcattgttcttagccat 156123

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>ref|XM_543381.2| PREDICTED: Canis familiaris similar to B-cell CLL/lymphoma 7A
           isoform a, transcript variant 1 (LOC486256), mRNA
          Length = 794

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 101 tgcatgttgctaccagcaaccagagctc 128
           |||||| || ||||||||||||||||||
Sbjct: 364 tgcatgatgataccagcaaccagagctc 391

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>ref|XM_854798.1| PREDICTED: Canis familiaris similar to B-cell CLL/lymphoma 7A
           isoform a, transcript variant 3 (LOC486256), mRNA
          Length = 1017

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 101 tgcatgttgctaccagcaaccagagctc 128
           |||||| || ||||||||||||||||||
Sbjct: 427 tgcatgatgataccagcaaccagagctc 454

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>ref|XM_854760.1| PREDICTED: Canis familiaris similar to B-cell CLL/lymphoma 7A
           isoform a, transcript variant 2 (LOC486256), mRNA
          Length = 954

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 101 tgcatgttgctaccagcaaccagagctc 128
           |||||| || ||||||||||||||||||
Sbjct: 364 tgcatgatgataccagcaaccagagctc 391

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>gb|AC129539.11| Mus musculus chromosome 16, clone RP23-246B24, complete sequence
          Length = 238585

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acaaacaagtgtattttact 20
             ||||||||||||||||||||
Sbjct: 80758 acaaacaagtgtattttact 80777

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>emb|CT025636.2| Pan troglodytes chromosome X clone RP43-029M22 map Xq28, complete
             sequence
          Length = 176404

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   ctctcagaatttctgattca 522
             ||||||||||||||||||||
Sbjct: 39820 ctctcagaatttctgattca 39801

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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     agagctcaactataaatata 141
               ||||||||||||||||||||
Sbjct: 1787673 agagctcaactataaatata 1787692

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>gb|AC103630.10| Mus musculus chromosome 6, clone RP24-358D8, complete sequence
          Length = 184937

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   tctcagaatttctgattcaa 523
             ||||||||||||||||||||
Sbjct: 77141 tctcagaatttctgattcaa 77160

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>gb|AC026202.7| Homo sapiens chromosome 3 clone RP11-572B2 map 3p, complete sequence
          Length = 204248

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ctcaactataaatatatggt 145
              ||||||||||||||||||||
Sbjct: 102259 ctcaactataaatatatggt 102278

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>emb|AL772370.7| Human DNA sequence from clone RP11-184B10 on chromosome X Contains the
             5' end of the SMPX gene for X-linked small muscle protein,
             complete sequence
          Length = 104749

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   ctctcagaatttctgattca 522
             ||||||||||||||||||||
Sbjct: 98737 ctctcagaatttctgattca 98718

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>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the 5'
              end of the GPR64 gene for G protein-coupled receptor 64 and
              a CpG island, complete sequence
          Length = 191318

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    tccataaaggaatcaagctttcct 387
              ||||||||||||| ||||||||||
Sbjct: 119301 tccataaaggaataaagctttcct 119324

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>gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138412

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     gatgaaacaaaatatcatat 80
              ||||||||||||||||||||
Sbjct: 131062 gatgaaacaaaatatcatat 131081

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>gb|AY308801.1| Oyster mushroom isometric virus II RNA-dependent RNA polymerase gene,
            complete cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  tcacgaatttcagatttctt 446
            ||||||||||||||||||||
Sbjct: 1585 tcacgaatttcagatttctt 1566

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>emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segment 3/7
          Length = 348759

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tccatggtttgggtttacaa 99
              ||||||||||||||||||||
Sbjct: 114011 tccatggtttgggtttacaa 114030

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>gb|AY158230.1| Mus musculus strain 129/SvJ chromosome 10 clone 10A1 unknown genomic
            sequence
          Length = 77891

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attaaagcactagatgaaac 68
            ||||||||||||||||||||
Sbjct: 3162 attaaagcactagatgaaac 3181

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>gb|AC124254.5| Homo sapiens chromosome 18, clone RP11-176N18, complete sequence
          Length = 208155

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 628  agtttctccttttctgcagg 647
            ||||||||||||||||||||
Sbjct: 2138 agtttctccttttctgcagg 2119

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>gb|AC021064.20| Homo sapiens 3 BAC RP11-49A15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162895

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    aatttcagatttcttcagat 451
              ||||||||||||||||||||
Sbjct: 122509 aatttcagatttcttcagat 122528

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>gb|AC010113.6| Drosophila melanogaster 3L BAC RPCI98-10H23 (Roswell Park Cancer
              Institute Drosophila BAC Library) complete sequence
          Length = 182898

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    aaaggaatcaagctttcctg 388
              ||||||||||||||||||||
Sbjct: 108819 aaaggaatcaagctttcctg 108800

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>gb|AC026402.3| Homo sapiens chromosome 4 clone CTB-51E13, complete sequence
          Length = 176959

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    ttctgattcaacgttcttct 532
              ||||||||||||||||||||
Sbjct: 163854 ttctgattcaacgttcttct 163835

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>ref|XM_625061.1| PREDICTED: Apis mellifera similar to GTP-binding protein LepA,
            putative (LOC552687), partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 166  atggttgctgatgaatatctggga 189
            |||||| |||||||||||||||||
Sbjct: 1240 atggttcctgatgaatatctggga 1263

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 130      actataaatatatggtccat 149
                ||||||||||||||||||||
Sbjct: 22824668 actataaatatatggtccat 22824649

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 130      actataaatatatggtccat 149
                ||||||||||||||||||||
Sbjct: 19734056 actataaatatatggtccat 19734075

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>gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C2 map 3p, complete sequence
          Length = 181164

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ctcaactataaatatatggt 145
              ||||||||||||||||||||
Sbjct: 102813 ctcaactataaatatatggt 102832

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>gb|AC018821.4|AC018821 Homo sapiens chromosome 3 clone RP11-294H24 map 3p, complete sequence
          Length = 153879

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ctcaactataaatatatggt 145
             ||||||||||||||||||||
Sbjct: 11536 ctcaactataaatatatggt 11555

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>gb|AC026164.5|AC026164 Homo sapiens chromosome 3 clone RP11-116K5 map 3p, complete sequence
          Length = 155769

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ctcaactataaatatatggt 145
             ||||||||||||||||||||
Sbjct: 59471 ctcaactataaatatatggt 59490

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>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acaaacaagtgtattttact 20
              ||||||||||||||||||||
Sbjct: 155164 acaaacaagtgtattttact 155183

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>gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complete sequence
          Length = 159952

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   taaaggaatcaagctttcct 387
             ||||||||||||||||||||
Sbjct: 93854 taaaggaatcaagctttcct 93873

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>gb|AC007021.3|AC007021 Homo sapiens PAC clone RP6-155F9 from Xq23, complete sequence
          Length = 122674

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 623   tttggagtttctccttttct 642
             ||||||||||||||||||||
Sbjct: 75474 tttggagtttctccttttct 75455

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>gb|AC096709.19| Homo sapiens chromosome 18, clone RP11-707P24, complete sequence
          Length = 199285

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 628  agtttctccttttctgcagg 647
            ||||||||||||||||||||
Sbjct: 1251 agtttctccttttctgcagg 1270

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>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aactataaatatatggtcca 148
             ||||||||||||||||||||
Sbjct: 31115 aactataaatatatggtcca 31134

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>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1596_C06
          Length = 124721

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aactataaatatatggtcca 148
             ||||||||||||||||||||
Sbjct: 90560 aactataaatatatggtcca 90579

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>dbj|AB072276.1| Ipomoea nil transposon Tpn106 DNA, complete sequence
          Length = 7090

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 472  tttgctgcttccctctcttt 491
            ||||||||||||||||||||
Sbjct: 3710 tttgctgcttccctctcttt 3729

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>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   actataaatatatggtccat 149
             ||||||||||||||||||||
Sbjct: 66062 actataaatatatggtccat 66081

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>dbj|AP006845.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             fosmid clone:OSJNOa174H12
          Length = 33245

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   actataaatatatggtccat 149
             ||||||||||||||||||||
Sbjct: 13260 actataaatatatggtccat 13241

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>emb|AL163209.2|HS21C009 Homo sapiens chromosome 21 segment HS21C009
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ccatggtttgggtttacaat 100
              ||||||||||||||||||||
Sbjct: 181967 ccatggtttgggtttacaat 181948

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>emb|BX248120.7| Zebrafish DNA sequence from clone CH211-160J6 in linkage group 18,
             complete sequence
          Length = 181815

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    catggtttgggtttacaatt 101
             ||||||||||||||||||||
Sbjct: 35347 catggtttgggtttacaatt 35366

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>gb|AC174640.3| Mus musculus BAC clone RP24-576A3 from chromosome 6, complete sequence
          Length = 270621

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 504    tctcagaatttctgattcaa 523
              ||||||||||||||||||||
Sbjct: 267171 tctcagaatttctgattcaa 267152

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>emb|CT025155.9| Mouse DNA sequence from clone RP23-228F18 on chromosome 16, complete
             sequence
          Length = 203093

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   tcaatggcattagggtcctt 605
             ||||||||||||||||||||
Sbjct: 39212 tcaatggcattagggtcctt 39231

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>gb|AE003558.3| Drosophila melanogaster chromosome 3L, section 27 of 83 of the complete
             sequence
          Length = 284442

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   aaaggaatcaagctttcctg 388
             ||||||||||||||||||||
Sbjct: 95751 aaaggaatcaagctttcctg 95732

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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    aaatatatggtccatggatt 154
              ||||||||||||||||||||
Sbjct: 331636 aaatatatggtccatggatt 331655

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>emb|AJ009632.2|HS265A22 Homo sapiens chromosome 21 PAC RPCIP704A22265Q2, complete sequence
          Length = 116177

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    ccatggtttgggtttacaat 100
             ||||||||||||||||||||
Sbjct: 48746 ccatggtttgggtttacaat 48727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,462,143
Number of Sequences: 3902068
Number of extensions: 7462143
Number of successful extensions: 146812
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146265
Number of HSP's gapped (non-prelim): 547
length of query: 680
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 657
effective length of database: 17,143,297,704
effective search space: 11263146591528
effective search space used: 11263146591528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result