| Clone Name | rbags17j17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK098985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090G24, full insert sequence Length = 1645 Score = 426 bits (215), Expect = e-116 Identities = 452/531 (85%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 1339 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 1280 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 1279 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 1220 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 1219 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 1160 Query: 328 tgcagaatgattatgggcagggaaacttcgtctaggcgactttctatctcttgtgtggtc 387 |||| |||||| |||||||| ||||| || || | ||||| || || || | |||||| Sbjct: 1159 tgcaaaatgataatgggcagcgaaacctcctccaaacgactctcgatttcctttgtggtt 1100 Query: 388 ctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcacattgtaa 447 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 1099 ctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcacattataa 1040 Query: 448 gagcactgctcttgtttttctttctctttgaatgccaattctgctaagtccttatttgga 507 || |||||||| ||||||| ||||||||||| ||||| |||||||| || || | |||| Sbjct: 1039 gaacactgctcctgttttttcttctctttgaaagccaactctgctaaatctttttgtgga 980 Query: 508 acaagcttctcttttggaaggagtttagccaagaaaatcagaacttgctgaacaggccaa 567 |||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||| Sbjct: 979 acaagcttctcttttggaagaagtctagccataaaaattagaacttgctgaacaggccaa 920 Query: 568 gctgggaccacgtcatctgaaatcttgcacataggtgcaactagaattgcaccattccat 627 | || | ||| ||||||| |||||||||||| || |||||||| |||||||||| |||| Sbjct: 919 ggcggaatcacatcatctgcaatcttgcacatgggcgcaactagtattgcaccatcccat 860 Query: 628 tcttttggttgcttaaagtgaatcttcaatgcaactgctccacccatagat 678 || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 859 tcatttggttgcttaaaatgaatcttcaatgcaactgctccacccatagat 809
>dbj|AK066939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N22, full insert sequence Length = 1660 Score = 426 bits (215), Expect = e-116 Identities = 452/531 (85%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 1339 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 1280 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 1279 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 1220 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 1219 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 1160 Query: 328 tgcagaatgattatgggcagggaaacttcgtctaggcgactttctatctcttgtgtggtc 387 |||| |||||| |||||||| ||||| || || | ||||| || || || | |||||| Sbjct: 1159 tgcaaaatgataatgggcagcgaaacctcctccaaacgactctcgatttcctttgtggtt 1100 Query: 388 ctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcacattgtaa 447 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 1099 ctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcacattataa 1040 Query: 448 gagcactgctcttgtttttctttctctttgaatgccaattctgctaagtccttatttgga 507 || |||||||| ||||||| ||||||||||| ||||| |||||||| || || | |||| Sbjct: 1039 gaacactgctcctgttttttcttctctttgaaagccaactctgctaaatctttttgtgga 980 Query: 508 acaagcttctcttttggaaggagtttagccaagaaaatcagaacttgctgaacaggccaa 567 |||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||| Sbjct: 979 acaagcttctcttttggaagaagtctagccataaaaattagaacttgctgaacaggccaa 920 Query: 568 gctgggaccacgtcatctgaaatcttgcacataggtgcaactagaattgcaccattccat 627 | || | ||| ||||||| |||||||||||| || |||||||| |||||||||| |||| Sbjct: 919 ggcggaatcacatcatctgcaatcttgcacatgggcgcaactagtattgcaccatcccat 860 Query: 628 tcttttggttgcttaaagtgaatcttcaatgcaactgctccacccatagat 678 || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 859 tcatttggttgcttaaaatgaatcttcaatgcaactgctccacccatagat 809
>ref|NM_194765.1| Oryza sativa (japonica cultivar-group) putative lipase-like protein (OSJNBa0087H07.2), mRNA Length = 1395 Score = 190 bits (96), Expect = 4e-45 Identities = 156/176 (88%) Strand = Plus / Minus Query: 381 tgtggtcctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcac 440 |||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 1071 tgtggttctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcac 1012 Query: 441 attgtaagagcactgctcttgtttttctttctctttgaatgccaattctgctaagtcctt 500 ||| ||||| |||||||| ||||||| ||||||||||| ||||| |||||||| || || Sbjct: 1011 attataagaacactgctcctgttttttcttctctttgaaagccaactctgctaaatcttt 952 Query: 501 atttggaacaagcttctcttttggaaggagtttagccaagaaaatcagaacttgct 556 | |||||||||||||||||||||||| ||| |||||| ||||| |||||||||| Sbjct: 951 ttgtggaacaagcttctcttttggaagaagtctagccataaaaattagaacttgct 896 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttgcttaaagtgaat 650 ||||||||| || |||||||| |||||||||| |||||| |||||||||||||| ||||| Sbjct: 897 cttgcacatgggcgcaactagtattgcaccatcccattcatttggttgcttaaaatgaat 838 Query: 651 cttcaatgcaactgctccacccatagat 678 |||||||||||||||||||||||||||| Sbjct: 837 cttcaatgcaactgctccacccatagat 810 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 1370 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 1311 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 1310 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 1251 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 1250 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 1191 Query: 328 tgcagaatgattatgggcagggaaac 353 |||| |||||| |||||||| ||||| Sbjct: 1190 tgcaaaatgataatgggcagcgaaac 1165
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttgcttaaagtgaat 650 ||||||||| || |||||||| |||||||||| |||||| |||||||||||||| ||||| Sbjct: 2183976 cttgcacatgggcgcaactagtattgcaccatcccattcatttggttgcttaaaatgaat 2183917 Query: 651 cttcaatgcaactgctccacccatagat 678 |||||||||||||||||||||||||||| Sbjct: 2183916 cttcaatgcaactgctccacccatagat 2183889 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 453 ctgctcttgtttttctttctctttgaatgccaattctgctaagtccttatttggaacaag 512 |||||| ||||||| ||||||||||| ||||| |||||||| || || | ||||||||| Sbjct: 2184189 ctgctcctgttttttcttctctttgaaagccaactctgctaaatctttttgtggaacaag 2184130 Query: 513 cttctcttttggaaggagtttagccaagaaaatcagaacttgctgaacaggccaag 568 ||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| Sbjct: 2184129 cttctcttttggaagaagtctagccataaaaattagaacttgctgaacaggccaag 2184074 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 2185423 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 2185364 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 2185363 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 2185304 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 2185303 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 2185244 Query: 328 tgcagaatgattatgggcagggaaac 353 |||| |||||| |||||||| ||||| Sbjct: 2185243 tgcaaaatgataatgggcagcgaaac 2185218 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 381 tgtggtcctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcac 440 |||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 2184675 tgtggttctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcac 2184616 Query: 441 attgtaagagcactgc 456 ||| ||||| |||||| Sbjct: 2184615 attataagaacactgc 2184600
>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence Length = 156654 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttgcttaaagtgaat 650 ||||||||| || |||||||| |||||||||| |||||| |||||||||||||| ||||| Sbjct: 9630 cttgcacatgggcgcaactagtattgcaccatcccattcatttggttgcttaaaatgaat 9571 Query: 651 cttcaatgcaactgctccacccatagat 678 |||||||||||||||||||||||||||| Sbjct: 9570 cttcaatgcaactgctccacccatagat 9543 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 453 ctgctcttgtttttctttctctttgaatgccaattctgctaagtccttatttggaacaag 512 |||||| ||||||| ||||||||||| ||||| |||||||| || || | ||||||||| Sbjct: 9843 ctgctcctgttttttcttctctttgaaagccaactctgctaaatctttttgtggaacaag 9784 Query: 513 cttctcttttggaaggagtttagccaagaaaatcagaacttgctgaacaggccaag 568 ||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| Sbjct: 9783 cttctcttttggaagaagtctagccataaaaattagaacttgctgaacaggccaag 9728 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 11077 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 11018 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 11017 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 10958 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 10957 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 10898 Query: 328 tgcagaatgattatgggcagggaaac 353 |||| |||||| |||||||| ||||| Sbjct: 10897 tgcaaaatgataatgggcagcgaaac 10872 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 381 tgtggtcctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcac 440 |||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 10329 tgtggttctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcac 10270 Query: 441 attgtaagagcactgc 456 ||| ||||| |||||| Sbjct: 10269 attataagaacactgc 10254
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttgcttaaagtgaat 650 ||||||||| || |||||||| |||||||||| |||||| |||||||||||||| ||||| Sbjct: 2183976 cttgcacatgggcgcaactagtattgcaccatcccattcatttggttgcttaaaatgaat 2183917 Query: 651 cttcaatgcaactgctccacccatagat 678 |||||||||||||||||||||||||||| Sbjct: 2183916 cttcaatgcaactgctccacccatagat 2183889 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 453 ctgctcttgtttttctttctctttgaatgccaattctgctaagtccttatttggaacaag 512 |||||| ||||||| ||||||||||| ||||| |||||||| || || | ||||||||| Sbjct: 2184189 ctgctcctgttttttcttctctttgaaagccaactctgctaaatctttttgtggaacaag 2184130 Query: 513 cttctcttttggaaggagtttagccaagaaaatcagaacttgctgaacaggccaag 568 ||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| Sbjct: 2184129 cttctcttttggaagaagtctagccataaaaattagaacttgctgaacaggccaag 2184074 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 2185423 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 2185364 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 2185363 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 2185304 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 2185303 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 2185244 Query: 328 tgcagaatgattatgggcagggaaac 353 |||| |||||| |||||||| ||||| Sbjct: 2185243 tgcaaaatgataatgggcagcgaaac 2185218 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 381 tgtggtcctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcac 440 |||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 2184675 tgtggttctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcac 2184616 Query: 441 attgtaagagcactgc 456 ||| ||||| |||||| Sbjct: 2184615 attataagaacactgc 2184600
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttgcttaaagtgaat 650 ||||||||| || |||||||| |||||||||| |||||| |||||||||||||| ||||| Sbjct: 2183927 cttgcacatgggcgcaactagtattgcaccatcccattcatttggttgcttaaaatgaat 2183868 Query: 651 cttcaatgcaactgctccacccatagat 678 |||||||||||||||||||||||||||| Sbjct: 2183867 cttcaatgcaactgctccacccatagat 2183840 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 453 ctgctcttgtttttctttctctttgaatgccaattctgctaagtccttatttggaacaag 512 |||||| ||||||| ||||||||||| ||||| |||||||| || || | ||||||||| Sbjct: 2184140 ctgctcctgttttttcttctctttgaaagccaactctgctaaatctttttgtggaacaag 2184081 Query: 513 cttctcttttggaaggagtttagccaagaaaatcagaacttgctgaacaggccaag 568 ||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| Sbjct: 2184080 cttctcttttggaagaagtctagccataaaaattagaacttgctgaacaggccaag 2184025 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 148 gaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcgtccggt 207 |||||||||||||||||||| ||||| || ||||| |||| || || |||| || ||| Sbjct: 2185374 gaatgctgatccagccaagaaattatatcatcgaggacttgaaaaattgcctcatctggt 2185315 Query: 208 tcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtccgatgtc 267 |||||||||||||| || || ||||| ||||| ||||||| ||| |||| || || || Sbjct: 2185314 tcaccttccaagatagcgtgatatgcatctttataaaggcgaagcgtcttatctgagctc 2185255 Query: 268 ttcgctttttcatagaggtctttgctcacgcctggatcggtgaccaaatcagcatcgcca 327 |||||||| |||||||| |||| ||||| |||| || |||||||||||| | || ||| Sbjct: 2185254 ttcgctttatcatagagagctttactcacagctgggtctgtgaccaaatcaccctcacca 2185195 Query: 328 tgcagaatgattatgggcagggaaac 353 |||| |||||| |||||||| ||||| Sbjct: 2185194 tgcaaaatgataatgggcagcgaaac 2185169 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 381 tgtggtcctcaacatctccaaagctgttcgaagacgtggtttatccttgtaggcaatcac 440 |||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 2184626 tgtggttctcagcatctccaaagctgttcggagacgtggtttatccttgtacgcaatcac 2184567 Query: 441 attgtaagagcactgc 456 ||| ||||| |||||| Sbjct: 2184566 attataagaacactgc 2184551
>gb|AY109678.1| Zea mays CL18174_1 mRNA sequence Length = 1424 Score = 119 bits (60), Expect = 1e-23 Identities = 120/140 (85%) Strand = Plus / Minus Query: 310 accaaatcagcatcgccatgcagaatgattatgggcagggaaacttcgtctaggcgactt 369 |||| |||||| || || |||| |||||| | ||||| ||||| || ||||| || ||| Sbjct: 1008 accatatcagcctcaccgtgcaaaatgatcaagggcaaagaaacctcttctagacgcctt 949 Query: 370 tctatctcttgtgtggtcctcaacatctccaaagctgttcgaagacgtggtttatccttg 429 |||||||||||||| || |||| |||||||| ||||||||| | |||||||||||||||| Sbjct: 948 tctatctcttgtgtcgttctcagcatctccagagctgttcgcaaacgtggtttatccttg 889 Query: 430 taggcaatcacattgtaaga 449 ||||||||||||||| |||| Sbjct: 888 taggcaatcacattgaaaga 869 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 633 tggttgcttaaagtgaatcttcaatgcaactgctccacccatagat 678 ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 685 tggttgcttgaagtgaaccttcaatgcaactgctccacccatagat 640 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 142 tttgcggaatgctgatccagccaagagattatgtcgtcgagaactttgaagatcccctcg 201 |||| |||||||||||| ||||| || || || || |||||||||| ||| || || | Sbjct: 1176 tttgtggaatgctgatcgagccaggatatgatatcatcgagaacttggaatattgtctgg 1117 Query: 202 tccggttcaccttccaagatggcatggtatgcgtctttgtaaaggcacagcatcttgtc 260 |||||||||||||||||||| || || || || ||||||| ||||||||| ||||||| Sbjct: 1116 tccggttcaccttccaagatagcgtgatacgcacctttgtagaggcacagcttcttgtc 1058 Score = 54.0 bits (27), Expect = 6e-04 Identities = 100/126 (79%) Strand = Plus / Minus Query: 480 tgccaattctgctaagtccttatttggaacaagcttctcttttggaaggagtttagccaa 539 |||||| || ||||| ||||| | ||||||||||| |||||||| || ||||| |||| Sbjct: 838 tgccaactcagctaaatccttttgaggaacaagcttttcttttggcagaagtttggccat 779 Query: 540 gaaaatcagaacttgctgaacaggccaagctgggaccacgtcatctgaaatcttgcacat 599 | ||||||||||||| ||||||| ||| ||||| || |||| ||||||||||| Sbjct: 778 nnnnnttagaacttgctgaatgggccaaggtggaaccacatcgtctgctatcttgcacat 719 Query: 600 aggtgc 605 ||||| Sbjct: 718 cggtgc 713
>gb|AC147741.11| Medicago truncatula clone mth2-17b23, complete sequence Length = 110572 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 610 agaattgcaccattccattcttttggttgcttaaagtgaatcttcaatgcaactgctcca 669 |||||||||||||||||| |||| ||||| || ||||| ||||||| ||||| ||||| Sbjct: 108053 agaattgcaccattccatgctttaggttgtttgaagtgtgtcttcaacgcaacagctccg 107994 Query: 670 cccatagat 678 ||||||||| Sbjct: 107993 cccatagat 107985
>dbj|AK120982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042C18, full insert sequence Length = 1296 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 583 tctgaaatcttgcacataggtgcaactagaattgcaccattccattcttttggttg 638 |||||||||||||||||||||||||| |||| | |||| ||||||||||||||| Sbjct: 724 tctgaaatcttgcacataggtgcaacaagaagcactccatcccattcttttggttg 669
>gb|BT017899.1| Zea mays clone EL01N0516C01.c mRNA sequence Length = 847 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 583 tctgaaatcttgcacataggtgcaactagaattgcaccattccattcttttggttgctta 642 ||||||||||||||||||||||| || |||| |||||| |||||||| | ||||||| Sbjct: 219 tctgaaatcttgcacataggtgcgacaagaagcacaccatcccattcttgttgttgcttc 160 Query: 643 aagtg 647 ||||| Sbjct: 159 aagtg 155
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttg 638 |||||||||||||||||| |||| | |||| ||||||||||||||| Sbjct: 28378697 cttgcacataggtgcaacaagaagcactccatcccattcttttggttg 28378744
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 591 cttgcacataggtgcaactagaattgcaccattccattcttttggttg 638 |||||||||||||||||| |||| | |||| ||||||||||||||| Sbjct: 93797 cttgcacataggtgcaacaagaagcactccatcccattcttttggttg 93844
>gb|AC007380.3| Homo sapiens BAC clone RP11-150O13 from 2, complete sequence Length = 207362 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 96 aaatgacaaaaaaggtatctgtg 118 ||||||||||||||||||||||| Sbjct: 120263 aaatgacaaaaaaggtatctgtg 120241
>emb|AL158164.15| Human DNA sequence from clone RP11-414K1 on chromosome 10 Contains the 3' end of the gene for the likely ortholog of mouse sialyltransferase 8-VI (alpha-2 8-sialytransferase) (ST8SIA-VI), a novel gene and the 5' end of a novel gene, complete sequence Length = 151289 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 tcaccttccaagatggcatggt 229 |||||||||||||||||||||| Sbjct: 91133 tcaccttccaagatggcatggt 91112
>dbj|AP003733.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-810P12, complete sequence Length = 166867 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 aaaatggaattcccagccatga 84 |||||||||||||||||||||| Sbjct: 153129 aaaatggaattcccagccatga 153150 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 aaaatggaattcccagccatga 84 |||||||||||||||||||||| Sbjct: 143381 aaaatggaattcccagccatga 143360
>dbj|AP002793.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691L4, complete sequence Length = 181140 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 aaaatggaattcccagccatga 84 |||||||||||||||||||||| Sbjct: 23345 aaaatggaattcccagccatga 23366 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 aaaatggaattcccagccatga 84 |||||||||||||||||||||| Sbjct: 13598 aaaatggaattcccagccatga 13577
>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence Length = 84869 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 actgctcttgtttttctttctcttt 476 ||||||||| ||||||||||||||| Sbjct: 32958 actgctcttttttttctttctcttt 32982
>gb|AC134901.4| Mus musculus BAC clone RP23-287E23 from chromosome 18, complete sequence Length = 188224 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 tcttgtttttctttctctttg 477 ||||||||||||||||||||| Sbjct: 156609 tcttgtttttctttctctttg 156589
>gb|AC122213.4| Mus musculus BAC clone RP23-104C8 from chromosome 18, complete sequence Length = 188125 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 tcttgtttttctttctctttg 477 ||||||||||||||||||||| Sbjct: 21396 tcttgtttttctttctctttg 21376
>gb|AC117200.3| Mus musculus BAC clone RP23-164N7 from 3, complete sequence Length = 220758 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 ctcttgtttttctttctcttt 476 ||||||||||||||||||||| Sbjct: 80091 ctcttgtttttctttctcttt 80071
>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete sequence Length = 194230 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 548 gaacttgctgaacaggccaagctgg 572 |||||||||||| |||||||||||| Sbjct: 157177 gaacttgctgaataggccaagctgg 157153
>gb|AC119044.6| Homo sapiens 12 BAC RP11-23J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108899 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 525 aaggagtttagccaagaaaatcagaactt 553 |||||| ||| |||||||||||||||||| Sbjct: 77162 aaggagattaaccaagaaaatcagaactt 77190
>emb|AL596117.19| Mouse DNA sequence from clone RP23-326P7 on chromosome 11 Contains the Gp1ba gene for glycoprotein 1b alpha polypeptide, the Slc25a11 gene for solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier) member 11, the gene for a novel PA domain and C3HC4 type zinc finger (RING finger) containing protein, the Pfn1 gene for profilin 1, five novel genes, the Eno3 gene for muscle enolase 3 beta, the Spag7 gene for sperm associated antigen 7, the Kif1c gene for kinesin family member 1C, a ribosomal protein 37A (Rpl37a) pseudogene, the gene for a novel zinc finger protein and six CpG islands, complete sequence Length = 207086 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 548 gaacttgctgaacaggccaagctgg 572 |||||||||||| |||||||||||| Sbjct: 1582 gaacttgctgaataggccaagctgg 1558
>emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chromosome 11 Contains two novel genes, the Chrne gene for cholinergic receptor nicotinic epsilon polypeptide, genes 4930544D05Rik, C730027E14Rik and LOC327956, the gene for mitogen-activated protein kinase kinase kinase kinase 6 (Map4k6-pending), the Pld2 gene for phospholipase D2, the Psmb6 gene for proteasome (prosome, macropain) subunit beta type 6, a ribosomal protein L34 pseudogene, the 3' end of gene 2010003F10Rik and three CpG islands, complete sequence Length = 123943 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 548 gaacttgctgaacaggccaagctgg 572 |||||||||||| |||||||||||| Sbjct: 419 gaacttgctgaataggccaagctgg 443
>dbj|AB226818.1| Aspergillus oryzae cDNA, contig sequence: AoEST3680 Length = 350 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 ctcttgtttttctttctcttt 476 ||||||||||||||||||||| Sbjct: 194 ctcttgtttttctttctcttt 174
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 ctcttgtttttctttctcttt 476 ||||||||||||||||||||| Sbjct: 959850 ctcttgtttttctttctcttt 959830
>gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, complete sequence Length = 160903 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 ttgtttttctttctctttgaa 479 ||||||||||||||||||||| Sbjct: 73681 ttgtttttctttctctttgaa 73701
>dbj|AK081338.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130007L10 product:unclassifiable, full insert sequence Length = 2718 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 ctcttgtttttctttctcttt 476 ||||||||||||||||||||| Sbjct: 369 ctcttgtttttctttctcttt 389
>gb|AC099696.12| Mus musculus chromosome 1, clone RP23-453N3, complete sequence Length = 169022 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 499 ttatttggaacaagcttctct 519 ||||||||||||||||||||| Sbjct: 57238 ttatttggaacaagcttctct 57258
>gb|AF146687.1|FRNINE1 Fugu rubripes U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein (U2AF1-RS2), 19 kDa Golgi adaptor protein adaptin (AP19), and phosphorylase kinase alpha 2 subunit (PHKA2) genes, complete cds; kelch protein (KELCH1) and kelch protein (KELCH2) genes, partial cds; and protein phosphatase 1 (PPEF-1), X-linked juvenile retinoschisis precursor protein (XLRS1), and serine-threonine kinase 9 (STK9) genes, complete cds Length = 62576 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 cttgtttttctttctctttga 478 ||||||||||||||||||||| Sbjct: 51328 cttgtttttctttctctttga 51348
>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence Length = 209618 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 tcttgtttttctttctcttt 476 |||||||||||||||||||| Sbjct: 55988 tcttgtttttctttctcttt 55969
>gb|AY587583.1| Papaya ringspot virus isolate Philippines coat protein mRNA, partial cds Length = 819 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 39 ttgtttttctttctctttga 20
>gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complete sequence Length = 198967 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 atccttgtaggcaatcacat 442 |||||||||||||||||||| Sbjct: 43784 atccttgtaggcaatcacat 43765
>gb|BC049186.1| Mus musculus ectodermal-neural cortex 1, mRNA (cDNA clone MGC:54719 IMAGE:6485551), complete cds Length = 4435 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 1955 actgctcctgtttttctttctctt 1932
>gb|BC058098.1| Mus musculus ectodermal-neural cortex 1, mRNA (cDNA clone MGC:67088 IMAGE:6824970), complete cds Length = 4695 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 2259 actgctcctgtttttctttctctt 2236
>gb|AC135080.2| Mus musculus BAC clone RP24-369P14 from chromosome 1, complete sequence Length = 164994 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 actgctcttgtttttctttc 471 |||||||||||||||||||| Sbjct: 18194 actgctcttgtttttctttc 18213
>gb|AC102217.9| Mus musculus chromosome 1, clone RP24-160A23, complete sequence Length = 214578 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttc 471 |||||||||||||||||||| Sbjct: 3685 actgctcttgtttttctttc 3666
>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182933 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gcactgctcttgtttttctt 469 |||||||||||||||||||| Sbjct: 119088 gcactgctcttgtttttctt 119069
>gb|AC132601.4| Mus musculus BAC clone RP24-165F4 from chromosome Y, complete sequence Length = 186363 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 171536 gctccacaaatcacaaaaaaggta 171559 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 140003 gctccacaaatcacaaaaaaggta 140026 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 108913 gctccacaaatcacaaaaaaggta 108890
>gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosome 13, complete sequence Length = 151819 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 65047 actgctcctgtttttctttctctt 65070
>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 170859 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 455 gctcttgtttttctttctctttga 478 |||||||||||||||||| ||||| Sbjct: 105365 gctcttgtttttctttctatttga 105388
>emb|AL592423.8| Human DNA sequence from clone RP11-1A24 on chromosome 6 Contains part of the GRM1 gene for metabotropic glutamate receptor 1 and a novel pseudogene, complete sequence Length = 53728 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 ctgctcttgtttttctttct 472 |||||||||||||||||||| Sbjct: 36048 ctgctcttgtttttctttct 36029
>emb|AL442003.8| Human DNA sequence from clone RP11-324H6 on chromosome 10 Contains the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2), the 3' end of the gene for translocase of inner mitochondrial membrane 23 (TIMM23), a novel gene, a solute carrier family 9 isoform 3 (SLC9A3) pseudogene, a novel gene, the 5' end of gene FLJ10824, a pseudogene similar to part of KIAA0592/FLJ10824 and two CpG islands, complete sequence Length = 163570 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 tgtttttctttctctttgaa 479 |||||||||||||||||||| Sbjct: 73619 tgtttttctttctctttgaa 73638
>emb|AL160173.9| Human DNA sequence from clone RP11-6I13 on chromosome 1q31.1-31.3, complete sequence Length = 33407 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ctcttgtttttctttctctt 475 |||||||||||||||||||| Sbjct: 19678 ctcttgtttttctttctctt 19659
>ref|XM_775523.1| PREDICTED: Strongylocentrotus purpuratus similar to predicted CDS, zn-finger, CCHC type and RNA-directed DNA polymerase and Integrase, catalytic domain containing protein family member (XS258) (LOC575107), partial mRNA Length = 2484 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 caattctgctaagtccttatttgg 506 ||||||||||||||||| |||||| Sbjct: 2067 caattctgctaagtcctcatttgg 2044
>gb|AF506902.1| Papaya ringspot virus isolate PHP-01 coat protein (cp) gene, partial cds Length = 834 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506894.1| Papaya ringspot virus isolate THW-04 coat protein (cp) gene, partial cds Length = 834 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506872.1| Papaya ringspot virus isolate VNP-19 coat protein (cp) gene, partial cds Length = 837 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506871.1| Papaya ringspot virus isolate VNP-20 coat protein (cp) gene, partial cds Length = 837 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506861.1| Papaya ringspot virus isolate VNW-30 coat protein (cp) gene, partial cds Length = 837 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506860.1| Papaya ringspot virus isolate VNW-31 coat protein (cp) gene, partial cds Length = 837 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506859.1| Papaya ringspot virus isolate VNW-32 coat protein (cp) gene, partial cds Length = 837 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506853.1| Papaya ringspot virus isolate VNW-38 coat protein (cp) gene, partial cds Length = 849 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>gb|AF506851.1| Papaya ringspot virus isolate VNW-40 coat protein (cp) gene, partial cds Length = 840 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 3/10 Length = 348475 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 caccttccaagatggcatgg 228 |||||||||||||||||||| Sbjct: 346354 caccttccaagatggcatgg 346373
>emb|AJ875104.1| Papaya ringspot virus P partial gene for polyprotein, genomic RNA, isolate VNP-Kontum Length = 1059 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 300 ttgtttttctttctctttga 281
>gb|AC004844.1| Homo sapiens PAC clone RP4-613I23 from 7p11-p13, complete sequence Length = 141895 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 tcttgtttttctttctcttt 476 |||||||||||||||||||| Sbjct: 48835 tcttgtttttctttctcttt 48816
>gb|AC163691.4| Mus musculus BAC clone RP24-1D8 from chromosome y, complete sequence Length = 165543 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 40259 gctccacaaatcacaaaaaaggta 40282
>gb|AC084429.5| Mus Musculus Chromosome 2 Clone RP23-291P1, complete sequence Length = 181684 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 tcttgtttttctttctcttt 476 |||||||||||||||||||| Sbjct: 26691 tcttgtttttctttctcttt 26672
>ref|NM_167474.1| Drosophila melanogaster CG8909-RB (CG8909), mRNA Length = 6724 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 atccttgtaggcaatcacat 442 |||||||||||||||||||| Sbjct: 4023 atccttgtaggcaatcacat 4004
>dbj|AK132173.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched library, clone:3321403F16 product:ectodermal-neural cortex 1, full insert sequence Length = 4736 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 2324 actgctcctgtttttctttctctt 2301
>emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 in linkage group 5, complete sequence Length = 204094 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 tcttgtttttctttctcttt 476 |||||||||||||||||||| Sbjct: 38161 tcttgtttttctttctcttt 38142
>ref|NM_007930.3| Mus musculus ectodermal-neural cortex 1 (Enc1), mRNA Length = 4695 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 2259 actgctcctgtttttctttctctt 2236
>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201259 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gcactgctcttgtttttctt 469 |||||||||||||||||||| Sbjct: 8951 gcactgctcttgtttttctt 8932
>dbj|AK049187.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330011O05 product:ectodermal-neural cortex 1, full insert sequence Length = 2848 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 2319 actgctcctgtttttctttctctt 2296
>dbj|AK044906.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130011D12 product:ectodermal-neural cortex 1, full insert sequence Length = 2943 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 2324 actgctcctgtttttctttctctt 2301
>gb|AF374863.1|AF374863 Papaya ringspot virus isolate Philippines coat protein mRNA, partial cds Length = 837 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttga 478 |||||||||||||||||||| Sbjct: 36 ttgtttttctttctctttga 17
>emb|BX323828.7| Zebrafish DNA sequence from clone DKEY-102M7 in linkage group 14, complete sequence Length = 206011 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 ttgtttttctttctctttgaatgc 482 |||||||||||||| ||||||||| Sbjct: 96401 ttgtttttctttctttttgaatgc 96378
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 caccttccaagatggcatgg 228 |||||||||||||||||||| Sbjct: 1042742 caccttccaagatggcatgg 1042761
>gb|AC105303.23| Mus musculus strain C57BL/6J chromosome 2 clone rp23-60i12, complete sequence Length = 176206 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tcttgtttttctttctcttt 476 |||||||||||||||||||| Sbjct: 24017 tcttgtttttctttctcttt 24036
>gb|AC084426.1|CBRG24I15 Caenorhabditis briggsae cosmid G24I15, complete sequence Length = 37636 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 cttgtttttctttctctttg 477 |||||||||||||||||||| Sbjct: 37245 cttgtttttctttctctttg 37264
>gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, complete sequence Length = 127698 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ttcaccttccaagatggcat 226 |||||||||||||||||||| Sbjct: 67150 ttcaccttccaagatggcat 67131
>gb|U65079.1|MMU65079 Mus musculus actin-binding protein (ENC-1) mRNA, complete cds Length = 2300 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 actgctcttgtttttctttctctt 475 ||||||| |||||||||||||||| Sbjct: 2176 actgctcctgtttttctttctctt 2153
>emb|AL929170.16| Mouse DNA sequence from clone RP23-451M16 on chromosome 2, complete sequence Length = 164121 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tcttgtttttctttctcttt 476 |||||||||||||||||||| Sbjct: 145072 tcttgtttttctttctcttt 145091
>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete sequence Length = 303344 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 atccttgtaggcaatcacat 442 |||||||||||||||||||| Sbjct: 211698 atccttgtaggcaatcacat 211679
>gb|AY102568.1| Fusarium lunulosporum strain NRRL 13393 trichothecene gene cluster, partial sequence Length = 18718 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ccttgtaggcaatcacattg 444 |||||||||||||||||||| Sbjct: 582 ccttgtaggcaatcacattg 601
>gb|AC160967.4| Mus musculus BAC clone RP24-385N6 from chromosome y, complete sequence Length = 150231 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 25319 gctccacaaatcacaaaaaaggta 25342
>gb|AC130839.4| Mus musculus BAC clone RP24-439L9 from Y, complete sequence Length = 148806 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 140276 gctccacaaatcacaaaaaaggta 140299 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 108692 gctccacaaatcacaaaaaaggta 108715 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 69975 gctccacaaatcacaaaaaaggta 69998 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 38721 gctccacaaatcacaaaaaaggta 38744 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gctccacaaatgacaaaaaaggta 112 ||||||||||| |||||||||||| Sbjct: 7631 gctccacaaatcacaaaaaaggta 7608
>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017, complete sequence Length = 121127 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ctgctcttgtttttctttct 472 |||||||||||||||||||| Sbjct: 11601 ctgctcttgtttttctttct 11620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,390,428 Number of Sequences: 3902068 Number of extensions: 7390428 Number of successful extensions: 144772 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 144453 Number of HSP's gapped (non-prelim): 317 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)