ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 170 3e-39
3gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 170 3e-39
4gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 170 3e-39
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
6dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
7ref|NM_100577.3| Arabidopsis thaliana binding AT1G07030 mRNA, co... 56 1e-04
8gb|BT008723.1| Arabidopsis thaliana At1g07030 gene, complete cds 56 1e-04
9gb|AY140067.1| Arabidopsis thaliana mitochondrial carrier protei... 56 1e-04
10emb|BX814422.1|CNS0ADJU Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
11emb|BX813983.1|CNS0ADIB Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
12emb|BX816739.1|CNS0ADEX Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
13emb|AJ007580.1|RNI7580 Ribes nigrum mRNA for mitochondrial carri... 52 0.002
14emb|AJ344241.1|TAE344241 Triticum aestivum/Thinopyrum intermediu... 44 0.50
15emb|AJ344240.1|TAE344240 Triticum aestivum/Thinopyrum intermediu... 44 0.50
16gb|AC122182.4| Mus musculus BAC clone RP23-12G9 from 1, complete... 44 0.50
17gb|AY187020.1| Hordeum vulgare subsp. vulgare phosphate transpor... 44 0.50
18gb|AY187019.1| Hordeum vulgare subsp. vulgare phosphate transpor... 44 0.50
19gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosom... 42 2.0
20gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, com... 42 2.0
21emb|Z98547.2|PFMAL3P3 Plasmodium falciparum MAL3P3, complete seq... 42 2.0
22emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4 42 2.0
23emb|AJ251789.2|LCA251789 Lactobacillus casei bacteriophage A2 co... 42 2.0
24gb|AC114877.2| Homo sapiens chromosome 3 clone CTD-2270K17, comp... 42 2.0
25emb|BX640466.9| Zebrafish DNA sequence from clone CH211-138A11 i... 42 2.0
26gb|AC103922.2| Homo sapiens chromosome 3 clone RP11-226E22, comp... 42 2.0
27emb|BX470232.17| Zebrafish DNA sequence from clone CH211-196F2 i... 42 2.0
28gb|AC138070.3| Homo sapiens chromosome 3 clone RP11-263E3, compl... 42 2.0
29emb|BX569783.4| Zebrafish DNA sequence from clone CH211-245H14 i... 42 2.0
30emb|BX510372.6| Zebrafish DNA sequence from clone CH211-243J20 i... 42 2.0
31gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, com... 42 2.0
32gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, comple... 42 2.0
33gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 40 7.8
34ref|XM_956813.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.8
35ref|XM_328983.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.8
36gb|AF543197.1| Hordeum vulgare subsp. vulgare phosphate transpor... 40 7.8
37ref|XM_385788.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 7.8
38gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosom... 40 7.8
39gb|AC092990.4| Homo sapiens 3 BAC RP11-418A22 (Roswell Park Canc... 40 7.8
40emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 7.8
41emb|BX842642.1| Mycoplasma mycoides subsp. mycoides SC genomic D... 40 7.8
42gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosom... 40 7.8
43gb|AC107918.5| Homo sapiens chromosome 8, clone RP11-481A20, com... 40 7.8
44gb|AC027287.21| Homo sapiens 12 BAC RP11-616L12 (Roswell Park Ca... 40 7.8
45gb|AC106847.3| Homo sapiens chromosome 8, clone CTD-2333A6, comp... 40 7.8
46gb|AC084114.8| Homo sapiens chromosome 8, clone RP11-1059L18, co... 40 7.8
47gb|AC016576.8| Homo sapiens chromosome 5 clone CTB-51A17, comple... 40 7.8
48emb|BX323598.9| Zebrafish DNA sequence from clone CH211-196M2 in... 40 7.8
49gb|AY188394.1| Hordeum vulgare subsp. vulgare phosphate transpor... 40 7.8
50emb|BX324212.8| Zebrafish DNA sequence from clone CH211-209N20 i... 40 7.8
51dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20,... 40 7.8
52dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.8
53dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.8
54dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.8 
>dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B10, full
            insert sequence
          Length = 1364

 Score =  198 bits (100), Expect = 1e-47
 Identities = 202/236 (85%)
 Strand = Plus / Minus

                                                                        
Query: 307  tattttctccttttctcattaaatctttcgaagaacgacttcgaggcttcgtatgtggac 366
            ||||| || |||||||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 1094 tatttccttcttttctcgttgaatctttcgaagaacgactttgaggcctcgtacgtcgac 1035

                                                                        
Query: 367  cagcatatggctgctgccggtgcgtggaatagcattctcggcttccatcccctcataagc 426
            ||||| || || ||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1034 cagcagatagcagctgcaggtgcgtggaacagcattcttggcttccatcctctcataagc 975

                                                                        
Query: 427  ccaacgtatccatcgcgctttataattgttctgaacacatctcctatagaactactagca 486
            ||| | |||||||| |||||||| ||||||||||| ||||| ||||| || ||||| |  
Sbjct: 974  ccagcatatccatcacgctttatgattgttctgaatacatcacctattgagctacttgag 915

                                                                    
Query: 487  aaacgttcacatccgcatacaccctggcactgcagttgcgtcttgacaacatcgag 542
            || || ||||| ||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct: 914  aagcgctcacagccgcacacaccctgacactgcagctgagtcttgacaacgtcgag 859
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  170 bits (86), Expect = 3e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                            
Query: 307      tattttctccttttctcattaaatctttcgaagaacgacttcgaggcttcgtatgtggac 366
                ||||| || |||||||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 10362546 tatttccttcttttctcgttgaatctttcgaagaacgactttgaggcctcgtacgtcgac 10362487

                                                                            
Query: 367      cagcatatggctgctgccggtgcgtggaatagcattctcggcttccatcccctcataagc 426
                ||||| || || ||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 10362486 cagcagatagcagctgcaggtgcgtggaacagcattcttggcttccatcctctcataagc 10362427

                                                                            
Query: 427      ccaacgtatccatcgcgctttataattgttctgaacacatctcctatagaactactagca 486
                ||| | |||||||| |||||||| ||||||||||| ||||| ||||| || ||||| |  
Sbjct: 10362426 ccagcatatccatcacgctttatgattgttctgaatacatcacctattgagctacttgag 10362367

                                          
Query: 487      aaacgttcacatccgcatacaccctg 512
                || || ||||| ||||| ||||||||
Sbjct: 10362366 aagcgctcacagccgcacacaccctg 10362341
to top
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  170 bits (86), Expect = 3e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                         
Query: 307   tattttctccttttctcattaaatctttcgaagaacgacttcgaggcttcgtatgtggac 366
             ||||| || |||||||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 19099 tatttccttcttttctcgttgaatctttcgaagaacgactttgaggcctcgtacgtcgac 19040

                                                                         
Query: 367   cagcatatggctgctgccggtgcgtggaatagcattctcggcttccatcccctcataagc 426
             ||||| || || ||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 19039 cagcagatagcagctgcaggtgcgtggaacagcattcttggcttccatcctctcataagc 18980

                                                                         
Query: 427   ccaacgtatccatcgcgctttataattgttctgaacacatctcctatagaactactagca 486
             ||| | |||||||| |||||||| ||||||||||| ||||| ||||| || ||||| |  
Sbjct: 18979 ccagcatatccatcacgctttatgattgttctgaatacatcacctattgagctacttgag 18920

                                       
Query: 487   aaacgttcacatccgcatacaccctg 512
             || || ||||| ||||| ||||||||
Sbjct: 18919 aagcgctcacagccgcacacaccctg 18894
to top
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score =  170 bits (86), Expect = 3e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                         
Query: 307   tattttctccttttctcattaaatctttcgaagaacgacttcgaggcttcgtatgtggac 366
             ||||| || |||||||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 76012 tatttccttcttttctcgttgaatctttcgaagaacgactttgaggcctcgtacgtcgac 75953

                                                                         
Query: 367   cagcatatggctgctgccggtgcgtggaatagcattctcggcttccatcccctcataagc 426
             ||||| || || ||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 75952 cagcagatagcagctgcaggtgcgtggaacagcattcttggcttccatcctctcataagc 75893

                                                                         
Query: 427   ccaacgtatccatcgcgctttataattgttctgaacacatctcctatagaactactagca 486
             ||| | |||||||| |||||||| ||||||||||| ||||| ||||| || ||||| |  
Sbjct: 75892 ccagcatatccatcacgctttatgattgttctgaatacatcacctattgagctacttgag 75833

                                       
Query: 487   aaacgttcacatccgcatacaccctg 512
             || || ||||| ||||| ||||||||
Sbjct: 75832 aagcgctcacagccgcacacaccctg 75807
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  170 bits (86), Expect = 3e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                            
Query: 307      tattttctccttttctcattaaatctttcgaagaacgacttcgaggcttcgtatgtggac 366
                ||||| || |||||||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 10360647 tatttccttcttttctcgttgaatctttcgaagaacgactttgaggcctcgtacgtcgac 10360588

                                                                            
Query: 367      cagcatatggctgctgccggtgcgtggaatagcattctcggcttccatcccctcataagc 426
                ||||| || || ||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 10360587 cagcagatagcagctgcaggtgcgtggaacagcattcttggcttccatcctctcataagc 10360528

                                                                            
Query: 427      ccaacgtatccatcgcgctttataattgttctgaacacatctcctatagaactactagca 486
                ||| | |||||||| |||||||| ||||||||||| ||||| ||||| || ||||| |  
Sbjct: 10360527 ccagcatatccatcacgctttatgattgttctgaatacatcacctattgagctacttgag 10360468

                                          
Query: 487      aaacgttcacatccgcatacaccctg 512
                || || ||||| ||||| ||||||||
Sbjct: 10360467 aagcgctcacagccgcacacaccctg 10360442
to top
>dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112D16, full
            insert sequence
          Length = 2890

 Score =  170 bits (86), Expect = 3e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                        
Query: 307  tattttctccttttctcattaaatctttcgaagaacgacttcgaggcttcgtatgtggac 366
            ||||| || |||||||| || |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 2528 tatttccttcttttctcgttgaatctttcgaagaacgactttgaggcctcgtacgtcgac 2469

                                                                        
Query: 367  cagcatatggctgctgccggtgcgtggaatagcattctcggcttccatcccctcataagc 426
            ||||| || || ||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 2468 cagcagatagcagctgcaggtgcgtggaacagcattcttggcttccatcctctcataagc 2409

                                                                        
Query: 427  ccaacgtatccatcgcgctttataattgttctgaacacatctcctatagaactactagca 486
            ||| | |||||||| |||||||| ||||||||||| ||||| ||||| || ||||| |  
Sbjct: 2408 ccagcatatccatcacgctttatgattgttctgaatacatcacctattgagctacttgag 2349

                                      
Query: 487  aaacgttcacatccgcatacaccctg 512
            || || ||||| ||||| ||||||||
Sbjct: 2348 aagcgctcacagccgcacacaccctg 2323
to top
>ref|NM_100577.3| Arabidopsis thaliana binding AT1G07030 mRNA, complete cds
          Length = 1477

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  atagaactactagcaaaacgttcacatccgcatacaccctggcactgcagttgcgtcttg 531
            |||||||||||||  || || |||||||| || |||||||| || ||||  |||||||||
Sbjct: 1097 atagaactactagtgaagcggtcacatccacacacaccctgacattgcaactgcgtcttg 1038

                    
Query: 532  acaacatc 539
            ||||||||
Sbjct: 1037 acaacatc 1030
to top
>gb|BT008723.1| Arabidopsis thaliana At1g07030 gene, complete cds
          Length = 981

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 472 atagaactactagcaaaacgttcacatccgcatacaccctggcactgcagttgcgtcttg 531
           |||||||||||||  || || |||||||| || |||||||| || ||||  |||||||||
Sbjct: 812 atagaactactagtgaagcggtcacatccacacacaccctgacattgcaactgcgtcttg 753

                   
Query: 532 acaacatc 539
           ||||||||
Sbjct: 752 acaacatc 745
to top
>gb|AY140067.1| Arabidopsis thaliana mitochondrial carrier protein, putative
            (At1g07030) mRNA, complete cds
          Length = 1420

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  atagaactactagcaaaacgttcacatccgcatacaccctggcactgcagttgcgtcttg 531
            |||||||||||||  || || |||||||| || |||||||| || ||||  |||||||||
Sbjct: 1042 atagaactactagtgaagcggtcacatccacacacaccctgacattgcaactgcgtcttg 983

                    
Query: 532  acaacatc 539
            ||||||||
Sbjct: 982  acaacatc 975
to top
>emb|BX814422.1|CNS0ADJU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB73ZB06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1437

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  atagaactactagcaaaacgttcacatccgcatacaccctggcactgcagttgcgtcttg 531
            |||||||||||||  || || |||||||| || |||||||| || ||||  |||||||||
Sbjct: 1098 atagaactactagtgaagcggtcacatccacacacaccctgacattgcaactgcgtcttg 1039

                    
Query: 532  acaacatc 539
            ||||||||
Sbjct: 1038 acaacatc 1031
to top
>emb|BX813983.1|CNS0ADIB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB50ZG05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1433

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  atagaactactagcaaaacgttcacatccgcatacaccctggcactgcagttgcgtcttg 531
            |||||||||||||  || || |||||||| || |||||||| || ||||  |||||||||
Sbjct: 1081 atagaactactagtgaagcggtcacatccacacacaccctgacattgcaactgcgtcttg 1022

                    
Query: 532  acaacatc 539
            ||||||||
Sbjct: 1021 acaacatc 1014
to top
>emb|BX816739.1|CNS0ADEX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZD02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1366

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 472  atagaactactagcaaaacgttcacatccgcatacaccctggcactgcagttgcgtcttg 531
            |||||||||||||  || || |||||||| || |||||||| || ||||  |||||||||
Sbjct: 1034 atagaactactagtgaagcggtcacatccacacacaccctgacattgcaactgcgtcttg 975

                    
Query: 532  acaacatc 539
            ||||||||
Sbjct: 974  acaacatc 967
to top
>emb|AJ007580.1|RNI7580 Ribes nigrum mRNA for mitochondrial carrier protein
          Length = 1294

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 496 catccgcatacaccctggcactgcagttgcgtcttgacaacatcgagtggtgtggtta 553
           |||||||| ||||| ||||||||||  || || ||||||||||| ||||| |||||||
Sbjct: 776 catccgcaaacaccttggcactgcaactgagttttgacaacatctagtggagtggtta 719
to top
>emb|AJ344241.1|TAE344241 Triticum aestivum/Thinopyrum intermedium alien addition line
           partial mRNA for inorganic phosphate transporter (pt2
           gene), clone 1
          Length = 1598

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 519 cagttgcgtcttgacaacatcgagtg 544
           ||||||||||||| ||||||||||||
Sbjct: 69  cagttgcgtcttggcaacatcgagtg 44
to top
>emb|AJ344240.1|TAE344240 Triticum aestivum/Thinopyrum intermedium alien addition line mRNA
           for inorganic phosphate transporter (pt2 gene)
          Length = 1843

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 519 cagttgcgtcttgacaacatcgagtg 544
           ||||||||||||| ||||||||||||
Sbjct: 140 cagttgcgtcttggcaacatcgagtg 115
to top
>gb|AC122182.4| Mus musculus BAC clone RP23-12G9 from 1, complete sequence
          Length = 197197

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 43     tgaaaaactagggcaaaattattctg 68
              ||||||||| ||||||||||||||||
Sbjct: 138659 tgaaaaacttgggcaaaattattctg 138634
to top
>gb|AY187020.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT2 mRNA,
           complete cds
          Length = 1799

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 519 cagttgcgtcttgacaacatcgagtg 544
           ||||||||||||| ||||||||||||
Sbjct: 88  cagttgcgtcttggcaacatcgagtg 63
to top
>gb|AY187019.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT2 gene,
            partial cds
          Length = 2785

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 519  cagttgcgtcttgacaacatcgagtg 544
            ||||||||||||| ||||||||||||
Sbjct: 1315 cagttgcgtcttggcaacatcgagtg 1290
to top
>gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosome 8, complete sequence
          Length = 179978

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     agaaggccatacagtgtgctc 34
              |||||||||||||||||||||
Sbjct: 145771 agaaggccatacagtgtgctc 145751
to top
>gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, complete sequence
          Length = 212185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 444   ctttataattgttctgaacac 464
             |||||||||||||||||||||
Sbjct: 32292 ctttataattgttctgaacac 32272
to top
>emb|Z98547.2|PFMAL3P3 Plasmodium falciparum MAL3P3, complete sequence
          Length = 116696

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    tttctccttttctcattaaat 330
              |||||||||||||||||||||
Sbjct: 116586 tttctccttttctcattaaat 116606
to top
>emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4
          Length = 113880

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tttctccttttctcattaaat 330
            |||||||||||||||||||||
Sbjct: 1890 tttctccttttctcattaaat 1910
to top
>emb|AJ251789.2|LCA251789 Lactobacillus casei bacteriophage A2 complete genome
          Length = 43411

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   aaaagagaagaaatacaacgt 141
             |||||||||||||||||||||
Sbjct: 34191 aaaagagaagaaatacaacgt 34211
to top
>gb|AC114877.2| Homo sapiens chromosome 3 clone CTD-2270K17, complete sequence
          Length = 179246

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     aggccatacagtgtgctcaat 37
              |||||||||||||||||||||
Sbjct: 158949 aggccatacagtgtgctcaat 158929
to top
>emb|BX640466.9| Zebrafish DNA sequence from clone CH211-138A11 in linkage group 2,
              complete sequence
          Length = 182577

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 39     atcctgaaaaactagggcaaaatta 63
              |||||||||||| ||||||||||||
Sbjct: 172379 atcctgaaaaacaagggcaaaatta 172355
to top
>gb|AC103922.2| Homo sapiens chromosome 3 clone RP11-226E22, complete sequence
          Length = 164479

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     aggccatacagtgtgctcaat 37
              |||||||||||||||||||||
Sbjct: 120819 aggccatacagtgtgctcaat 120839
to top
>emb|BX470232.17| Zebrafish DNA sequence from clone CH211-196F2 in linkage group 19,
             complete sequence
          Length = 194721

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    atcctgaaaaactagggcaaaatta 63
             |||||||||||| ||||||||||||
Sbjct: 19485 atcctgaaaaacaagggcaaaatta 19509
to top
>gb|AC138070.3| Homo sapiens chromosome 3 clone RP11-263E3, complete sequence
          Length = 169834

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    aggccatacagtgtgctcaat 37
             |||||||||||||||||||||
Sbjct: 12213 aggccatacagtgtgctcaat 12193
to top
>emb|BX569783.4| Zebrafish DNA sequence from clone CH211-245H14 in linkage group 20,
              complete sequence
          Length = 200617

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    agcagacggacacgccacagc 252
              |||||||||||||||||||||
Sbjct: 160209 agcagacggacacgccacagc 160189
to top
>emb|BX510372.6| Zebrafish DNA sequence from clone CH211-243J20 in linkage group 20,
             complete sequence
          Length = 134837

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   agcagacggacacgccacagc 252
             |||||||||||||||||||||
Sbjct: 51122 agcagacggacacgccacagc 51102
to top
>gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, complete sequence
          Length = 173113

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 444    ctttataattgttctgaacac 464
              |||||||||||||||||||||
Sbjct: 149892 ctttataattgttctgaacac 149872
to top
>gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, complete sequence
          Length = 163028

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     agaaggccatacagtgtgctc 34
              |||||||||||||||||||||
Sbjct: 161908 agaaggccatacagtgtgctc 161928
to top
>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   ctcggcttccatcccctcat 422
             ||||||||||||||||||||
Sbjct: 40907 ctcggcttccatcccctcat 40926
to top
>ref|XM_956813.1| Neurospora crassa OR74A hypothetical protein (NCU08278.1) partial
           mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 526 gtcttgacaacatcgagtgg 545
           ||||||||||||||||||||
Sbjct: 902 gtcttgacaacatcgagtgg 883
to top
>ref|XM_328983.1| Neurospora crassa OR74A hypothetical protein (NCU08278.1) partial
           mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 526 gtcttgacaacatcgagtgg 545
           ||||||||||||||||||||
Sbjct: 902 gtcttgacaacatcgagtgg 883
to top
>gb|AF543197.1| Hordeum vulgare subsp. vulgare phosphate transporter 1 (Pht1-1) gene,
            complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 519  cagttgcgtcttgacaacatcgag 542
            ||||||||||||| ||||||||||
Sbjct: 1457 cagttgcgtcttggcaacatcgag 1434
to top
>ref|XM_385788.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05612.1)
           partial mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 524 gcgtcttgacaacatcgagtggtgtggt 551
           |||||||||||||||||  |||||||||
Sbjct: 673 gcgtcttgacaacatcgcttggtgtggt 646
to top
>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence
          Length = 191274

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   acacaatcacttccaagaaa 297
             ||||||||||||||||||||
Sbjct: 50383 acacaatcacttccaagaaa 50364
to top
>gb|AC092990.4| Homo sapiens 3 BAC RP11-418A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 63610

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ctggaaaaatgatacatata 111
             ||||||||||||||||||||
Sbjct: 31341 ctggaaaaatgatacatata 31322
to top
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 56      caaaattattctggtatttg 75
               ||||||||||||||||||||
Sbjct: 2089247 caaaattattctggtatttg 2089266
to top
>emb|BX842642.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence;
              segment 1/4
          Length = 347558

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tcaatgatcctgaaaaacta 52
              ||||||||||||||||||||
Sbjct: 106844 tcaatgatcctgaaaaacta 106825
to top
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence
          Length = 226160

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    acacaatcacttccaagaaa 297
              ||||||||||||||||||||
Sbjct: 212356 acacaatcacttccaagaaa 212337
to top
>gb|AC107918.5| Homo sapiens chromosome 8, clone RP11-481A20, complete sequence
          Length = 150507

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    caaaaagagaagaaatacaa 138
              ||||||||||||||||||||
Sbjct: 110786 caaaaagagaagaaatacaa 110805
to top
>gb|AC027287.21| Homo sapiens 12 BAC RP11-616L12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 202703

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      gacacaaagaaggccataca 26
              ||||||||||||||||||||
Sbjct: 100120 gacacaaagaaggccataca 100101
to top
>gb|AC106847.3| Homo sapiens chromosome 8, clone CTD-2333A6, complete sequence
          Length = 135431

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   caaaaagagaagaaatacaa 138
             ||||||||||||||||||||
Sbjct: 40236 caaaaagagaagaaatacaa 40217
to top
>gb|AC084114.8| Homo sapiens chromosome 8, clone RP11-1059L18, complete sequence
          Length = 189127

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    ccacagcatggaagtacttg 265
              ||||||||||||||||||||
Sbjct: 131284 ccacagcatggaagtacttg 131265
to top
>gb|AC016576.8| Homo sapiens chromosome 5 clone CTB-51A17, complete sequence
          Length = 202302

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    cttttctcattaaatctttc 335
              ||||||||||||||||||||
Sbjct: 159298 cttttctcattaaatctttc 159279
to top
>emb|BX323598.9| Zebrafish DNA sequence from clone CH211-196M2 in linkage group 18,
              complete sequence
          Length = 197329

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    tttctcattaaatctttcga 337
              ||||||||||||||||||||
Sbjct: 182146 tttctcattaaatctttcga 182127
to top
>gb|AY188394.1| Hordeum vulgare subsp. vulgare phosphate transporter PT1
           (HORvu;Pht1;1) mRNA, complete cds
          Length = 1833

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 519 cagttgcgtcttgacaacatcgag 542
           ||||||||||||| ||||||||||
Sbjct: 88  cagttgcgtcttggcaacatcgag 65
to top
>emb|BX324212.8| Zebrafish DNA sequence from clone CH211-209N20 in linkage group 4,
              complete sequence
          Length = 212125

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    atacatataactcagccaaa 122
              ||||||||||||||||||||
Sbjct: 156004 atacatataactcagccaaa 155985
to top
>dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20, map 22, complete
             sequences
          Length = 62227

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aaattattctggtatttgctatcc 81
             ||||||||||| ||||||||||||
Sbjct: 49981 aaattattctgctatttgctatcc 49958
to top
>dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7
          Length = 82033

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   caaaaagagaagaaatacaa 138
             ||||||||||||||||||||
Sbjct: 38847 caaaaagagaagaaatacaa 38828
to top
>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aaattattctggtatttgctatcc 81
             ||||||||||| ||||||||||||
Sbjct: 15444 aaattattctgctatttgctatcc 15421
to top
>dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:KB851D4, APP-D21S292
             region, complete sequence
          Length = 137676

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aaattattctggtatttgctatcc 81
             ||||||||||| ||||||||||||
Sbjct: 48764 aaattattctgctatttgctatcc 48741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,171,212
Number of Sequences: 3902068
Number of extensions: 5171212
Number of successful extensions: 123371
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123156
Number of HSP's gapped (non-prelim): 215
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top