ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017626.1| Zea mays clone EL01N0436B03.c mRNA sequence 240 5e-60
2gb|AY581895.1| Zea mays sucrose transporter 2 (SUT2) mRNA, compl... 240 5e-60
3gb|AY137242.1| Oryza sativa (japonica cultivar-group) sucrose tr... 220 4e-54
4dbj|AK065430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 4e-54
5dbj|AB091673.1| Oryza sativa (japonica cultivar-group) OsSUT4 mR... 204 3e-49
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
7dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
8gb|AC103404.13| Mus musculus chromosome 5, clone RP23-21O1, comp... 50 0.009
9emb|AJ534442.1|PMA534442 Plantago major macronuclear mRNA for su... 48 0.036
10gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipie... 44 0.56
11gb|AC004506.1| Homo sapiens chromosome 5, P1 clone 274A11 (LBNL ... 42 2.2
12emb|Z71266.1|CER06C7 Caenorhabditis elegans Cosmid R06C7, comple... 42 2.2
13emb|X08065.1|CEMYO1 Caenorhabditis elegans myo-1 gene for myosin... 42 2.2
14gb|AC110776.5| Homo sapiens BAC clone RP11-291M14 from 4, comple... 42 2.2
15gb|AC113367.2| Homo sapiens chromosome 5 clone RP11-114H7, compl... 42 2.2
16gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 2.2
17ref|NM_059652.2| Caenorhabditis elegans LEThal family member (le... 42 2.2
18gb|AC117391.8| Homo sapiens 3 BAC RP11-3J15 (Roswell Park Cancer... 42 2.2
19emb|AL831766.3| Mouse DNA sequence from clone RP23-209N3 on chro... 42 2.2
20gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete seq... 40 8.7
21gb|AC010082.4| Homo sapiens BAC clone RP11-109D3 from 7, complet... 40 8.7
22gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, c... 40 8.7
23gb|AY805443.1| Uncultured bacterium clone FOR17 carbon monoxide ... 40 8.7
24gb|AY805434.1| Uncultured bacterium clone FOR22 carbon monoxide ... 40 8.7
25gb|AY805432.1| Uncultured bacterium clone FOR14 carbon monoxide ... 40 8.7
26emb|AL357123.11| Human DNA sequence from clone RP11-287E6 on chr... 40 8.7
27emb|AL133264.10| Human DNA sequence from clone RP3-369A17 on chr... 40 8.7
28emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 8.7
29emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 ... 40 8.7
30gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete seq... 40 8.7
31emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 i... 40 8.7
32gb|AC099063.2| Homo sapiens chromosome 1 clone RP4-620F22, compl... 40 8.7
33gb|AC104459.2| Homo sapiens chromosome 1 clone RP5-838N20, compl... 40 8.7
34emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 i... 40 8.7
35gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.7
36emb|BX890573.6| Zebrafish DNA sequence from clone DKEYP-90F5 in ... 40 8.7 
>gb|BT017626.1| Zea mays clone EL01N0436B03.c mRNA sequence
          Length = 862

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Minus

                                                                       
Query: 290 tggaatccggcggattggtagttgttcgacagcttgggtagcttgatcaccgcgagaact 349
           ||||| ||||| ||||||||   ||| |||||||| || |||||||  || ||||| || 
Sbjct: 551 tggaacccggcagattggtacgagttggacagctttggcagcttgagaactgcgagcaca 492

                                                                       
Query: 350 ccggctgccagtgagaagaccgaggccaaggcgaatgccgggatgttccctcccccgaag 409
           || |||||||| ||||||||||| |||||| |||| |||||| | |||||||| ||  | 
Sbjct: 491 cctgctgccagggagaagaccgaagccaagacgaacgccggggtattccctcctccatac 432

                                                                       
Query: 410 agcaggtcccatgggcctgctccgagcgacactactatctgaggagcgacgatggcaaga 469
           ||   ||||||||| |||||||| ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 431 agagcgtcccatggacctgctccaagcgacactactatctggggaaccacgatagcaaga 372

                                                                       
Query: 470 ttcaggactccagtagccaaaccttgtccgcctcctgttccggcagtcagctcagcagtc 529
           || |||||||| || |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 371 tttaggactcctgtggccaaaccttgtccacctcctgtaccggcagtcagctcagcagtc 312

                                                                
Query: 530 accgagaacggaacgctgtaagtgatcgaaagtggcaatccaagaagagagaa 582
           || || |||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 311 acagaaaacggaacgctgtaagtgatggagagtggcaatccgagaagagagaa 259
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>gb|AY581895.1| Zea mays sucrose transporter 2 (SUT2) mRNA, complete cds
          Length = 2166

 Score =  240 bits (121), Expect = 5e-60
 Identities = 250/293 (85%)
 Strand = Plus / Minus

                                                                        
Query: 290  tggaatccggcggattggtagttgttcgacagcttgggtagcttgatcaccgcgagaact 349
            ||||| ||||| ||||||||   ||| |||||||| || |||||||  || ||||| || 
Sbjct: 1801 tggaacccggcagattggtacgagttggacagctttggcagcttgagaactgcgagcaca 1742

                                                                        
Query: 350  ccggctgccagtgagaagaccgaggccaaggcgaatgccgggatgttccctcccccgaag 409
            || |||||||| ||||||||||| |||||| |||| |||||| | |||||||| ||  | 
Sbjct: 1741 cctgctgccagggagaagaccgaagccaagacgaacgccggggtattccctcctccatac 1682

                                                                        
Query: 410  agcaggtcccatgggcctgctccgagcgacactactatctgaggagcgacgatggcaaga 469
            ||   ||||||||| |||||||| ||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1681 agagcgtcccatggacctgctccaagcgacactactatctggggaaccacgatagcaaga 1622

                                                                        
Query: 470  ttcaggactccagtagccaaaccttgtccgcctcctgttccggcagtcagctcagcagtc 529
            || |||||||| || |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1621 tttaggactcctgtggccaaaccttgtccacctcctgtaccggcagtcagctcagcagtc 1562

                                                                 
Query: 530  accgagaacggaacgctgtaagtgatcgaaagtggcaatccaagaagagagaa 582
            || || |||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1561 acagaaaacggaacgctgtaagtgatggagagtggcaatccgagaagagagaa 1509
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>gb|AY137242.1| Oryza sativa (japonica cultivar-group) sucrose transporter SUT2 mRNA,
            complete cds
          Length = 1830

 Score =  220 bits (111), Expect = 4e-54
 Identities = 255/303 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  cagcttgggtagcttgatcaccgcgagaactccggctgccagtgagaagaccgaggccaa 378
            ||||||||||||||| |  |||||||| || || ||| | |||||||| || || |||||
Sbjct: 1780 cagcttgggtagcttaaggaccgcgaggacaccagctcctagtgagaaaacggaagccaa 1721

                                                                        
Query: 379  ggcgaatgccgggatgttccctcccccgaagagcaggtcccatgggcctgctccgagcga 438
            |||||| || |||| |||||||||||| |||||    |||||||| |||||||| || ||
Sbjct: 1720 ggcgaaagcagggacgttccctcccccaaagagagcatcccatggacctgctcctagtga 1661

                                                                        
Query: 439  cactactatctgaggagcgacgatggcaagattcaggactccagtagccaaaccttgtcc 498
            |||||||||||| ||| | ||||| ||||| ||||||||||| || |||| |||||||||
Sbjct: 1660 cactactatctgcggaacaacgattgcaaggttcaggactcctgttgccagaccttgtcc 1601

                                                                        
Query: 499  gcctcctgttccggcagtcagctcagcagtcaccgagaacggaacgctgtaagtgatcga 558
             ||||||||||| |||||||||||||||||||| || || |||||||| || ||||||||
Sbjct: 1600 acctcctgttccagcagtcagctcagcagtcacagaaaaaggaacgctatatgtgatcga 1541

                                                                        
Query: 559  aagtggcaatccaagaagagagaagagaatcagcgctgaagtcttgactgttttatctgc 618
             ||||||| |||||| || ||||| | |||||  |||||| |||| |||||||||| |||
Sbjct: 1540 gagtggcagtccaagtagggagaaaacaatcaaggctgaattcttcactgttttatttgc 1481

               
Query: 619  tcc 621
            |||
Sbjct: 1480 tcc 1478
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>dbj|AK065430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D24, full
            insert sequence
          Length = 2558

 Score =  220 bits (111), Expect = 4e-54
 Identities = 255/303 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  cagcttgggtagcttgatcaccgcgagaactccggctgccagtgagaagaccgaggccaa 378
            ||||||||||||||| |  |||||||| || || ||| | |||||||| || || |||||
Sbjct: 2185 cagcttgggtagcttaaggaccgcgaggacaccagctcctagtgagaaaacggaagccaa 2126

                                                                        
Query: 379  ggcgaatgccgggatgttccctcccccgaagagcaggtcccatgggcctgctccgagcga 438
            |||||| || |||| |||||||||||| |||||    |||||||| |||||||| || ||
Sbjct: 2125 ggcgaaagcagggacgttccctcccccaaagagagcatcccatggacctgctcctagtga 2066

                                                                        
Query: 439  cactactatctgaggagcgacgatggcaagattcaggactccagtagccaaaccttgtcc 498
            |||||||||||| ||| | ||||| ||||| ||||||||||| || |||| |||||||||
Sbjct: 2065 cactactatctgcggaacaacgattgcaaggttcaggactcctgttgccagaccttgtcc 2006

                                                                        
Query: 499  gcctcctgttccggcagtcagctcagcagtcaccgagaacggaacgctgtaagtgatcga 558
             ||||||||||| |||||||||||||||||||| || || |||||||| || ||||||||
Sbjct: 2005 acctcctgttccagcagtcagctcagcagtcacagaaaaaggaacgctatatgtgatcga 1946

                                                                        
Query: 559  aagtggcaatccaagaagagagaagagaatcagcgctgaagtcttgactgttttatctgc 618
             ||||||| |||||| || ||||| | |||||  |||||| |||| |||||||||| |||
Sbjct: 1945 gagtggcagtccaagtagggagaaaacaatcaaggctgaattcttcactgttttatttgc 1886

               
Query: 619  tcc 621
            |||
Sbjct: 1885 tcc 1883
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>dbj|AB091673.1| Oryza sativa (japonica cultivar-group) OsSUT4 mRNA for sucrose
            transporter, complete cds
          Length = 2158

 Score =  204 bits (103), Expect = 3e-49
 Identities = 253/303 (83%)
 Strand = Plus / Minus

                                                                        
Query: 319  cagcttgggtagcttgatcaccgcgagaactccggctgccagtgagaagaccgaggccaa 378
            ||||||||||||||| |  |||||||| || || ||| | |||||||| || || |||||
Sbjct: 1785 cagcttgggtagcttaaggaccgcgaggacaccagctcctagtgagaaaacggaagccaa 1726

                                                                        
Query: 379  ggcgaatgccgggatgttccctcccccgaagagcaggtcccatgggcctgctccgagcga 438
            |||||| || |||| |||||||||||| |||||    |||||||| |||||||| || ||
Sbjct: 1725 ggcgaaagcagggacgttccctcccccaaagagagcatcccatggacctgctcctagtga 1666

                                                                        
Query: 439  cactactatctgaggagcgacgatggcaagattcaggactccagtagccaaaccttgtcc 498
            |||||||||||| ||| | ||||| ||||| ||||||||||| || |||| |||||||||
Sbjct: 1665 cactactatctgcggaacaacgattgcaaggttcaggactcctgttgccagaccttgtcc 1606

                                                                        
Query: 499  gcctcctgttccggcagtcagctcagcagtcaccgagaacggaacgctgtaagtgatcga 558
             | ||||||||| |||||||||||||||||||| || || |||||||  || ||||||||
Sbjct: 1605 acttcctgttccagcagtcagctcagcagtcacagaaaaaggaacgccatatgtgatcga 1546

                                                                        
Query: 559  aagtggcaatccaagaagagagaagagaatcagcgctgaagtcttgactgttttatctgc 618
             ||||||| |||||| || ||||| | |||||  |||||| |||| |||||||||| |||
Sbjct: 1545 gagtggcagtccaagtagggagaaaacaatcaaggctgaattcttcactgttttatttgc 1486

               
Query: 619  tcc 621
            |||
Sbjct: 1485 tcc 1483
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                            
Query: 319      cagcttgggtagcttgatcaccgcgagaactccggctgccagtgagaagaccgaggccaa 378
                ||||||||||||||| |  |||||||| || || ||| | |||||||| || || |||||
Sbjct: 35571559 cagcttgggtagcttaaggaccgcgaggacaccagctcctagtgagaaaacggaagccaa 35571500

                                                                            
Query: 379      ggcgaatgccgggatgttccctcccccgaagagcaggtcccatgggcctgctccgagcga 438
                |||||| || |||| |||||||||||| |||||    |||||||| |||||||| || ||
Sbjct: 35571499 ggcgaaagcagggacgttccctcccccaaagagagcatcccatggacctgctcctagtga 35571440

                            
Query: 439      cactactatctg 450
                ||||||||||||
Sbjct: 35571439 cactactatctg 35571428



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 487      caaaccttgtccgcctcctgttccggcagtcagctcagcagtcaccgagaacggaacgct 546
                |||||||||||| ||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 35571217 caaaccttgtccacctcctgttccagcagtcagctcagcagtcacagaaaaaggaacgct 35571158

                          
Query: 547      gtaagtgatc 556
                 || ||||||
Sbjct: 35571157 atatgtgatc 35571148
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>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0452F04
          Length = 171421

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                         
Query: 319   cagcttgggtagcttgatcaccgcgagaactccggctgccagtgagaagaccgaggccaa 378
             ||||||||||||||| |  |||||||| || || ||| | |||||||| || || |||||
Sbjct: 87951 cagcttgggtagcttaaggaccgcgaggacaccagctcctagtgagaaaacggaagccaa 87892

                                                                         
Query: 379   ggcgaatgccgggatgttccctcccccgaagagcaggtcccatgggcctgctccgagcga 438
             |||||| || |||| |||||||||||| |||||    |||||||| |||||||| || ||
Sbjct: 87891 ggcgaaagcagggacgttccctcccccaaagagagcatcccatggacctgctcctagtga 87832

                         
Query: 439   cactactatctg 450
             ||||||||||||
Sbjct: 87831 cactactatctg 87820



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                         
Query: 487   caaaccttgtccgcctcctgttccggcagtcagctcagcagtcaccgagaacggaacgct 546
             |||||||||||| ||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 87609 caaaccttgtccacctcctgttccagcagtcagctcagcagtcacagaaaaaggaacgct 87550

                       
Query: 547   gtaagtgatc 556
              || ||||||
Sbjct: 87549 atatgtgatc 87540
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>gb|AC103404.13| Mus musculus chromosome 5, clone RP23-21O1, complete sequence
          Length = 251988

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 271    tctgtgttttcagcccatgtggaat 295
              |||||||||||||||||||||||||
Sbjct: 122183 tctgtgttttcagcccatgtggaat 122207
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>emb|AJ534442.1|PMA534442 Plantago major macronuclear mRNA for sucrose transporter (suc3 gene)
          Length = 1800

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 515  gtcagctcagcagtcaccgagaacggaacgctgtaagtga 554
            ||||||||||| ||||| ||||| || |||||||||||||
Sbjct: 1562 gtcagctcagccgtcacagagaagggtacgctgtaagtga 1523
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>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 494   tgtccgcctcctgttccggcag 515
             ||||||||||||||||||||||
Sbjct: 59454 tgtccgcctcctgttccggcag 59475
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>gb|AC004506.1| Homo sapiens chromosome 5, P1 clone 274A11 (LBNL H66), complete
             sequence
          Length = 82251

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   atctgtagatgttacacacag 248
             |||||||||||||||||||||
Sbjct: 19109 atctgtagatgttacacacag 19089
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>emb|Z71266.1|CER06C7 Caenorhabditis elegans Cosmid R06C7, complete sequence
          Length = 30911

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 574   aagagagaagagaatcagcgctgaa 598
             |||||||||||||||||| ||||||
Sbjct: 30345 aagagagaagagaatcagagctgaa 30321
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>emb|X08065.1|CEMYO1 Caenorhabditis elegans myo-1 gene for myosin heavy chain
          Length = 12241

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 574  aagagagaagagaatcagcgctgaa 598
            |||||||||||||||||| ||||||
Sbjct: 8161 aagagagaagagaatcagagctgaa 8185
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>gb|AC110776.5| Homo sapiens BAC clone RP11-291M14 from 4, complete sequence
          Length = 138838

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     ctttgcatatgcacacatgcc 99
              |||||||||||||||||||||
Sbjct: 112373 ctttgcatatgcacacatgcc 112393
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>gb|AC113367.2| Homo sapiens chromosome 5 clone RP11-114H7, complete sequence
          Length = 105787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   atctgtagatgttacacacag 248
             |||||||||||||||||||||
Sbjct: 23977 atctgtagatgttacacacag 23957
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 365     aagaccgaggccaaggcgaatgccg 389
               |||| ||||||||||||||||||||
Sbjct: 1472815 aagatcgaggccaaggcgaatgccg 1472839
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>ref|NM_059652.2| Caenorhabditis elegans LEThal family member (let-75) (let-75) mRNA,
            complete cds
          Length = 6454

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 574  aagagagaagagaatcagcgctgaa 598
            |||||||||||||||||| ||||||
Sbjct: 3282 aagagagaagagaatcagagctgaa 3306
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>gb|AC117391.8| Homo sapiens 3 BAC RP11-3J15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170008

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 568   tccaagaagagagaagagaat 588
             |||||||||||||||||||||
Sbjct: 37288 tccaagaagagagaagagaat 37268
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>emb|AL831766.3| Mouse DNA sequence from clone RP23-209N3 on chromosome 2, complete
             sequence
          Length = 178227

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   tctgtgttttcagcccatgtg 291
             |||||||||||||||||||||
Sbjct: 17173 tctgtgttttcagcccatgtg 17193
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>gb|AC149531.2| Xenopus tropicalis clone ISB-331C21, complete sequence
          Length = 98801

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    atcttttacaactttgcatatgca 91
             ||||||||||| ||||||||||||
Sbjct: 81134 atcttttacaaatttgcatatgca 81111
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>gb|AC010082.4| Homo sapiens BAC clone RP11-109D3 from 7, complete sequence
          Length = 143035

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    atatgcacacatgcctaact 104
             ||||||||||||||||||||
Sbjct: 73399 atatgcacacatgcctaact 73380
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>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence
          Length = 207763

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   gctctgggttctgtgttttc 281
             ||||||||||||||||||||
Sbjct: 85114 gctctgggttctgtgttttc 85095
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>gb|AY805443.1| Uncultured bacterium clone FOR17 carbon monoxide dehydrogenase form
           II large subunit gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 aagaccgaggccaaggcgaa 384
           ||||||||||||||||||||
Sbjct: 589 aagaccgaggccaaggcgaa 608
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>gb|AY805434.1| Uncultured bacterium clone FOR22 carbon monoxide dehydrogenase form
           II large subunit gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 aagaccgaggccaaggcgaa 384
           ||||||||||||||||||||
Sbjct: 589 aagaccgaggccaaggcgaa 608
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>gb|AY805432.1| Uncultured bacterium clone FOR14 carbon monoxide dehydrogenase form
           II large subunit gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 aagaccgaggccaaggcgaa 384
           ||||||||||||||||||||
Sbjct: 592 aagaccgaggccaaggcgaa 611
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>emb|AL357123.11| Human DNA sequence from clone RP11-287E6 on chromosome Xq26.3-27.3,
            complete sequence
          Length = 72354

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   gaacttcacctacatataca 43
            ||||||||||||||||||||
Sbjct: 9558 gaacttcacctacatataca 9577
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>emb|AL133264.10| Human DNA sequence from clone RP3-369A17 on chromosome 6p22.1-22.3
             Contains the 5' end of gene FLJ12619 (DKFZP564G182), a
             sigma 1 subunit adaptor-related protein complex 3 (AP3S1)
             (CLAPS3,Sigma3A) pseudogene and gene geminin (LOC51053).
             Contains 3 CpG islands, complete sequence
          Length = 83820

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   gggatgttccctcccccgaa 408
             ||||||||||||||||||||
Sbjct: 47445 gggatgttccctcccccgaa 47426
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gagaagaccgaggccaaggc 381
             ||||||||||||||||||||
Sbjct: 38339 gagaagaccgaggccaaggc 38320
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>emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 in linkage group 12,
             complete sequence
          Length = 123626

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   tctgtgttttcagcccatgt 290
             ||||||||||||||||||||
Sbjct: 60414 tctgtgttttcagcccatgt 60395
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>gb|AC149146.3| Xenopus tropicalis clone ISB-156G23, complete sequence
          Length = 96721

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    atcttttacaactttgcatatgca 91
             ||||||||||| ||||||||||||
Sbjct: 32487 atcttttacaaatttgcatatgca 32510
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>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8,
              complete sequence
          Length = 206751

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tacccaaaaataaaacagtg 64
              ||||||||||||||||||||
Sbjct: 155558 tacccaaaaataaaacagtg 155539
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>gb|AC099063.2| Homo sapiens chromosome 1 clone RP4-620F22, complete sequence
          Length = 110724

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   attgtgtatctgacaaaatg 163
             ||||||||||||||||||||
Sbjct: 96530 attgtgtatctgacaaaatg 96511
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>gb|AC104459.2| Homo sapiens chromosome 1 clone RP5-838N20, complete sequence
          Length = 127436

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    attgtgtatctgacaaaatg 163
              ||||||||||||||||||||
Sbjct: 118789 attgtgtatctgacaaaatg 118808
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>emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 in linkage group 22,
             complete sequence
          Length = 169981

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   acaaaatgaatcatttccca 175
             ||||||||||||||||||||
Sbjct: 42174 acaaaatgaatcatttccca 42155
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    aatgaatcatttcccatata 179
              ||||||||||||||||||||
Sbjct: 745826 aatgaatcatttcccatata 745807
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>emb|BX890573.6| Zebrafish DNA sequence from clone DKEYP-90F5 in linkage group 20,
            complete sequence
          Length = 86820

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 55   taaaacagtgtacatcttttacaa 78
            ||||||||||||||| ||||||||
Sbjct: 1728 taaaacagtgtacatgttttacaa 1751


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,126,856
Number of Sequences: 3902068
Number of extensions: 6126856
Number of successful extensions: 118187
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118066
Number of HSP's gapped (non-prelim): 116
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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