ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17j10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY107399.1| Zea mays PCO087601 mRNA sequence 54 9e-05
2ref|XM_473912.1| Oryza sativa (japonica cultivar-group), predic... 38 5.4
3emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 gen... 38 5.4
4emb|Z70688.1|HSN27C5 Human DNA sequence from clone LL22NC03-27C5... 38 5.4
5emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 38 5.4
6dbj|AK061943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.4
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
8gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complet... 38 5.4
9dbj|AK065137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.4
10emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 38 5.4
11gb|AC005821.1|AC005821 Homo sapiens chromosome 17, clone hRPK.15... 38 5.4
12dbj|AB032187.1| Oceanospirillum japonicum gyrB gene for DNA gyra... 38 5.4

>gb|AY107399.1| Zea mays PCO087601 mRNA sequence
          Length = 1198

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 92  taactcagcaccccattattgcacagt 118
           |||||||||||||||||||||||||||
Sbjct: 956 taactcagcaccccattattgcacagt 930



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>ref|XM_473912.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1368

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 96   tcagcaccccattattgcacagt 118
            |||||||||||||||||| ||||
Sbjct: 1368 tcagcaccccattattgcgcagt 1346



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>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences
          Length = 74658

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 96    tcagcaccccattattgcacagt 118
             |||||||||||||||||| ||||
Sbjct: 45456 tcagcaccccattattgcgcagt 45478



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>emb|Z70688.1|HSN27C5 Human DNA sequence from clone LL22NC03-27C5 on chromosome 22, complete
             sequence
          Length = 41375

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     attataaggaagtggcagc 19
             |||||||||||||||||||
Sbjct: 15826 attataaggaagtggcagc 15844



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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
             complete sequence
          Length = 164805

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 96    tcagcaccccattattgcacagt 118
             |||||||||||||||||| ||||
Sbjct: 73368 tcagcaccccattattgcgcagt 73346



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>dbj|AK061943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E01, full
           insert sequence
          Length = 662

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 96  tcagcaccccattattgcacagt 118
           |||||||||||||||||| ||||
Sbjct: 412 tcagcaccccattattgcgcagt 390



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 96       tcagcaccccattattgcacagt 118
                |||||||||||||||||| ||||
Sbjct: 31495685 tcagcaccccattattgcgcagt 31495663



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>gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complete sequence
          Length = 112626

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    tttgctaaacaagtgggca 64
             |||||||||||||||||||
Sbjct: 80847 tttgctaaacaagtgggca 80829



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>dbj|AK065137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A05, full
            insert sequence
          Length = 1931

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 96   tcagcaccccattattgcacagt 118
            |||||||||||||||||| ||||
Sbjct: 1678 tcagcaccccattattgcgcagt 1656



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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
              sequence
          Length = 131195

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 96     tcagcaccccattattgcacagt 118
              |||||||||||||||||| ||||
Sbjct: 113940 tcagcaccccattattgcgcagt 113918



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>gb|AC005821.1|AC005821 Homo sapiens chromosome 17, clone hRPK.156_L_14, complete sequence
          Length = 174428

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    ttgctaaacaagtgggcat 65
             |||||||||||||||||||
Sbjct: 19847 ttgctaaacaagtgggcat 19865



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>dbj|AB032187.1| Oceanospirillum japonicum gyrB gene for DNA gyrase B subunit,
           partial cds
          Length = 1144

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  ggtggttttgctaaacaag 58
           |||||||||||||||||||
Sbjct: 954 ggtggttttgctaaacaag 972


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 612,440
Number of Sequences: 3902068
Number of extensions: 612440
Number of successful extensions: 38198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38165
Number of HSP's gapped (non-prelim): 33
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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