| Clone Name | rbags17j01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthase, complete cds Length = 2558 Score = 315 bits (159), Expect = 3e-83 Identities = 181/192 (94%) Strand = Plus / Minus Query: 1 tattcaaagtaaaacgccggccatggcaacggtgacatcctccttgcanttaaaannnnn 60 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2390 tattcaaagtaaaacgccggccatggcaacggtgacatcctccttgcaattaaaaggggg 2331 Query: 61 nnagagctgctatacgagcactgcttactgcgccttggcgagctcggcgcggatctgctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2330 ggagagctgctatacgagcactgcttactgcgccttggcgagctcggcgcggatctgctt 2271 Query: 121 ggcggcctngaccatgttggtgagggcggncttgacctcggcgtacttgcggntcttgag 180 |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct: 2270 ggcggcctcgaccatgttggtgagggcgggcttgacctcggcgtacttgcgggtcttgag 2211 Query: 181 accgcagtcggg 192 |||||||||||| Sbjct: 2210 accgcagtcggg 2199
>emb|AM039904.1| Hordeum vulgare mRNA for methionine synthase 1 enzyme (ms1 gene) Length = 2642 Score = 307 bits (155), Expect = 7e-81 Identities = 180/192 (93%) Strand = Plus / Minus Query: 1 tattcaaagtaaaacgccggccatggcaacggtgacatcctccttgcanttaaaannnnn 60 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2435 tattcaaagtaaaacgccggccatggcaacggtgacatcctccttgcaattaaaaggggg 2376 Query: 61 nnagagctgctatacgagcactgcttactgcgccttggcgagctcggcgcggatctgctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2375 ggagagctgctatacgagcactgcttactgcgccttggcgagctcggcgcggatttgctt 2316 Query: 121 ggcggcctngaccatgttggtgagggcggncttgacctcggcgtacttgcggntcttgag 180 |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct: 2315 ggcggcctcgaccatgttggtgagggcgggcttgacctcggcgtacttgcgggtcttgag 2256 Query: 181 accgcagtcggg 192 |||||||||||| Sbjct: 2255 accgcagtcggg 2244
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 26684320 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 26684261 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 26684260 cctcgttgtacttgcgggtcttgagaccgcagtc 26684227 Score = 93.7 bits (47), Expect = 2e-16 Identities = 80/92 (86%) Strand = Plus / Minus Query: 98 gcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttgacc 157 ||||||| || |||||| ||||||||||| ||||||||||||||||| | ||| ||| Sbjct: 26696168 gcgagctgggtgcggatgagcttggcggccaaaaccatgttggtgagggcaggcttcacc 26696109 Query: 158 tcggcgtacttgcggntcttgagaccgcagtc 189 |||| |||||||||| |||||||||||||||| Sbjct: 26696108 tcggtgtacttgcgggtcttgagaccgcagtc 26696077
>dbj|AK099069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163D13, full insert sequence Length = 2640 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 2357 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 2298 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 2297 cctcgttgtacttgcgggtcttgagaccgcagtc 2264
>dbj|AK067958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E22, full insert sequence Length = 2058 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 1724 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 1665 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 1664 cctcgttgtacttgcgggtcttgagaccgcagtc 1631
>dbj|AK065255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J12, full insert sequence Length = 2668 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 2356 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 2297 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 2296 cctcgttgtacttgcgggtcttgagaccgcagtc 2263
>dbj|AK062198.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-G02, full insert sequence Length = 1064 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 781 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 722 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 721 cctcgttgtacttgcgggtcttgagaccgcagtc 688
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 26612489 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 26612430 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 26612429 cctcgttgtacttgcgggtcttgagaccgcagtc 26612396 Score = 93.7 bits (47), Expect = 2e-16 Identities = 80/92 (86%) Strand = Plus / Minus Query: 98 gcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttgacc 157 ||||||| || |||||| ||||||||||| ||||||||||||||||| | ||| ||| Sbjct: 26624337 gcgagctgggtgcggatgagcttggcggccaaaaccatgttggtgagggcaggcttcacc 26624278 Query: 158 tcggcgtacttgcggntcttgagaccgcagtc 189 |||| |||||||||| |||||||||||||||| Sbjct: 26624277 tcggtgtacttgcgggtcttgagaccgcagtc 26624246
>emb|BX072547.2|CNS09S4Q Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0090N22 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 8623 Score = 97.6 bits (49), Expect = 1e-17 Identities = 82/94 (87%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct: 2904 tggcgagctgggtgcggatgagcttggcggccgaaaccatgttggtaagggcgggcttga 2845 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 ||||| |||||||||| |||||||||||||||| Sbjct: 2844 cctcgttgtacttgcgggtcttgagaccgcagtc 2811
>dbj|AK067726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O11, full insert sequence Length = 2783 Score = 93.7 bits (47), Expect = 2e-16 Identities = 80/92 (86%) Strand = Plus / Minus Query: 98 gcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttgacc 157 ||||||| || |||||| ||||||||||| ||||||||||||||||| | ||| ||| Sbjct: 2474 gcgagctgggtgcggatgagcttggcggccaaaaccatgttggtgagggcaggcttcacc 2415 Query: 158 tcggcgtacttgcggntcttgagaccgcagtc 189 |||| |||||||||| |||||||||||||||| Sbjct: 2414 tcggtgtacttgcgggtcttgagaccgcagtc 2383
>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 83015 Score = 93.7 bits (47), Expect = 2e-16 Identities = 80/92 (86%) Strand = Plus / Plus Query: 98 gcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttgacc 157 ||||||| || |||||| ||||||||||| ||||||||||||||||| | ||| ||| Sbjct: 74959 gcgagctgggtgcggatgagcttggcggccaaaaccatgttggtgagggcaggcttcacc 75018 Query: 158 tcggcgtacttgcggntcttgagaccgcagtc 189 |||| |||||||||| |||||||||||||||| Sbjct: 75019 tcggtgtacttgcgggtcttgagaccgcagtc 75050
>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104849 Score = 93.7 bits (47), Expect = 2e-16 Identities = 80/92 (86%) Strand = Plus / Plus Query: 98 gcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttgacc 157 ||||||| || |||||| ||||||||||| ||||||||||||||||| | ||| ||| Sbjct: 102810 gcgagctgggtgcggatgagcttggcggccaaaaccatgttggtgagggcaggcttcacc 102869 Query: 158 tcggcgtacttgcggntcttgagaccgcagtc 189 |||| |||||||||| |||||||||||||||| Sbjct: 102870 tcggtgtacttgcgggtcttgagaccgcagtc 102901
>gb|AY109415.1| Zea mays CL598_2 mRNA sequence Length = 3017 Score = 87.7 bits (44), Expect = 1e-14 Identities = 83/97 (85%) Strand = Plus / Plus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 ||||||||| || |||||| |||| ||||| |||||||||||| ||||||| ||||| Sbjct: 641 tggcgagctgggtgcggatgagcttagcggcggagaccatgttggtcagggcgggcttga 700 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtcggg 192 |||| | |||||||||| ||||||| ||||||||||| Sbjct: 701 cctccgtgtacttgcgggtcttgaggccgcagtcggg 737
>dbj|AK067757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H17, full insert sequence Length = 2627 Score = 85.7 bits (43), Expect = 5e-14 Identities = 79/92 (85%) Strand = Plus / Minus Query: 98 gcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttgacc 157 ||||||| || |||||| ||||||||||| ||||||||||||||||| | ||| ||| Sbjct: 2355 gcgagctgggtgcggatgagcttggcggccaaaaccatgttggtgagggcaggcttcacc 2296 Query: 158 tcggcgtacttgcggntcttgagaccgcagtc 189 || | |||||||||| |||||||||||||||| Sbjct: 2295 tctgtgtacttgcgggtcttgagaccgcagtc 2264
>gb|AF439723.1|AF439723 Zea mays methionine synthase mRNA, partial cds Length = 2300 Score = 81.8 bits (41), Expect = 7e-13 Identities = 57/63 (90%) Strand = Plus / Minus Query: 130 gaccatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||||||| ||||||| ||||||||| | |||||||||| ||||||| |||||||| Sbjct: 2256 gaccatgttggtcagggcgggcttgacctccgtgtacttgcgggtcttgaggccgcagtc 2197 Query: 190 ggg 192 ||| Sbjct: 2196 ggg 2194
>gb|AY104793.1| Zea mays PCO079166 mRNA sequence Length = 2720 Score = 73.8 bits (37), Expect = 2e-10 Identities = 79/94 (84%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 |||| |||| || |||||| |||||| |||| |||||||||||| ||||||| ||||| Sbjct: 2399 tggcaagctgggtgcggatgagcttggtggccgagaccatgttggtcagggcgggcttga 2340 Query: 156 cctcggcgtacttgcggntcttgagaccgcagtc 189 |||| | ||||||||| |||||||||| ||||| Sbjct: 2339 cctccgtgtacttgcgtgtcttgagaccacagtc 2306
>gb|BT009353.1| Triticum aestivum clone wlm96.pk0018.c10:fis, full insert mRNA sequence Length = 2634 Score = 65.9 bits (33), Expect = 4e-08 Identities = 52/59 (88%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 ||||||||||| ||||||| ||| ||||| | |||||||||| ||||||| |||||||| Sbjct: 2329 accatgttggtcagggcgggcttcacctccgtgtacttgcgggtcttgaggccgcagtc 2271
>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds Length = 100773 Score = 65.9 bits (33), Expect = 4e-08 Identities = 52/59 (88%) Strand = Plus / Plus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 ||||||||||| ||||||| ||||||||| | ||||||||| |||||||||| ||||| Sbjct: 72721 accatgttggtcagggcgggcttgacctccgtgtacttgcgtgtcttgagaccacagtc 72779
>gb|BT016781.1| Zea mays clone Contig614 mRNA sequence Length = 1759 Score = 60.0 bits (30), Expect = 3e-06 Identities = 52/60 (86%) Strand = Plus / Minus Query: 130 gaccatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||||||| ||||| | ||| ||||| | ||||||||| |||||||||||||||| Sbjct: 1359 gaccatgttggtcagggcaggcttcacctccgtgtacttgcgtgtcttgagaccgcagtc 1300
>gb|AY111481.1| Zea mays CL598_4 mRNA sequence Length = 664 Score = 60.0 bits (30), Expect = 3e-06 Identities = 52/60 (86%) Strand = Plus / Plus Query: 130 gaccatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||||||| ||||| | ||| ||||| | ||||||||| |||||||||||||||| Sbjct: 334 gaccatgttggtcagggcaggcttcacctccgtgtacttgcgtgtcttgagaccgcagtc 393
>gb|AF220054.1|AF220054 Coffea arabica methionine synthase mRNA, partial cds Length = 680 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/88 (81%) Strand = Plus / Minus Query: 96 tggcgagctcggcgcggatctgcttggcggcctngaccatgttggtgagggcggncttga 155 |||| |||| || |||||| ||||||||||| |||||||| |||||| | ||| | Sbjct: 646 tggcaagctgggtgcggatttgcttggcggcggcaaccatgttttggagggccggcttca 587 Query: 156 cctcggcgtacttgcggntcttgagacc 183 |||| |||||||||||| |||||||||| Sbjct: 586 cctcagcgtacttgcgggtcttgagacc 559
>ref|XM_952059.1| Neurospora crassa OR74A hypothetical protein (NCU06512.1) partial mRNA Length = 2310 Score = 52.0 bits (26), Expect = 6e-04 Identities = 62/75 (82%) Strand = Plus / Minus Query: 118 cttggcggcctngaccatgttggtgagggcggncttgacctcggcgtacttgcggntctt 177 ||||||||||| ||||||| || |||||| ||||||||| | |||||||| |||| Sbjct: 2277 cttggcggcctcaaccatgtgggagagggcacccttgacctcatcccacttgcgggtctt 2218 Query: 178 gagaccgcagtcggg 192 |||||||||||||| Sbjct: 2217 aagaccgcagtcggg 2203
>ref|XM_326366.1| Neurospora crassa OR74A hypothetical protein (NCU06512.1) partial mRNA Length = 2310 Score = 52.0 bits (26), Expect = 6e-04 Identities = 62/75 (82%) Strand = Plus / Minus Query: 118 cttggcggcctngaccatgttggtgagggcggncttgacctcggcgtacttgcggntctt 177 ||||||||||| ||||||| || |||||| ||||||||| | |||||||| |||| Sbjct: 2277 cttggcggcctcaaccatgtgggagagggcacccttgacctcatcccacttgcgggtctt 2218 Query: 178 gagaccgcagtcggg 192 |||||||||||||| Sbjct: 2217 aagaccgcagtcggg 2203
>gb|AF404820.1|AF404820 Neurospora crassa methionine synthase (met-8) gene, complete cds Length = 3269 Score = 52.0 bits (26), Expect = 6e-04 Identities = 62/75 (82%) Strand = Plus / Minus Query: 118 cttggcggcctngaccatgttggtgagggcggncttgacctcggcgtacttgcggntctt 177 ||||||||||| ||||||| || |||||| ||||||||| | |||||||| |||| Sbjct: 2643 cttggcggcctcaaccatgtgggagagggcacccttgacctcatcccacttgcgggtctt 2584 Query: 178 gagaccgcagtcggg 192 |||||||||||||| Sbjct: 2583 aagaccgcagtcggg 2569
>ref|NM_121798.2| Arabidopsis thaliana ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase AT5G17920 (ATCIMS) mRNA, complete cds Length = 2682 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2344 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2286
>gb|BT000691.1| Arabidopsis thaliana clone RAFL08-16-E05 (R11047) putative 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (At5g17920) mRNA, complete cds Length = 2585 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2337 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2279
>gb|AY091692.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2298 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2252 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2194
>gb|AY070771.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2648 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>gb|AY069876.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2594 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>emb|AJ608673.1| Arabidopsis thaliana mRNA for cobalamin-independent methionine synthase (atms1 gene) Length = 2326 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2257 accatgttcttgagcgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2199
>gb|AY057499.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2613 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>gb|AY057478.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2608 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>gb|AY056098.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2460 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>dbj|AK221003.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-65-M04 Length = 390 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 68 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 10
>dbj|AK222123.1| Arabidopsis thaliana mRNA for 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase, complete cds, clone: RAFL22-94-C14 Length = 1684 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 1362 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 1304
>gb|AY048201.1| Arabidopsis thaliana AT5g17920/MPI7_60 mRNA, complete cds Length = 2549 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>gb|AF370522.1|AF370522 Arabidopsis thaliana cobalamin-independent methionine synthase (MPI7.9) mRNA, complete cds Length = 2646 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2334 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2276
>emb|BX831470.1|CNS0A1W8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS94ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1156 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 882 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 824
>emb|BX833585.1|CNS09Z4M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL64ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 601 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 284 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 226
>dbj|AB011480.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPI7 Length = 40548 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 39698 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 39640
>emb|X83499.1|CRMETS C.roseus MetE mRNA for methionine synthase Length = 2602 Score = 50.1 bits (25), Expect = 0.002 Identities = 30/32 (93%) Strand = Plus / Minus Query: 161 gcgtacttgcggntcttgagaccgcagtcggg 192 |||||||||||| |||||||||| |||||||| Sbjct: 2272 gcgtacttgcgggtcttgagaccacagtcggg 2241
>gb|U97200.1|ATU97200 Arabidopsis thaliana cobalamin-independent methionine synthase (ATCIMS) mRNA, complete cds Length = 2595 Score = 50.1 bits (25), Expect = 0.002 Identities = 50/59 (84%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgcagtc 189 |||||||| |||| || | ||||||||||| |||||| ||| |||||||||| ||||| Sbjct: 2260 accatgttcttgagtgcaggcttgacctcggtgtacttacgggtcttgagaccacagtc 2202
>dbj|AK107388.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C09, full insert sequence Length = 2566 Score = 46.1 bits (23), Expect = 0.039 Identities = 33/37 (89%) Strand = Plus / Minus Query: 118 cttggcggcctngaccatgttggtgagggcggncttg 154 ||||||||| | ||||| |||||||||||||| |||| Sbjct: 2337 cttggcggcgttgaccaagttggtgagggcggtcttg 2301
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.61 Identities = 46/55 (83%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgc 185 ||||||||||| || || | || ||||||| ||| |||||| |||||||||||| Sbjct: 25306402 accatgttggttagtgcaggtttcacctcggtgtatttgcgggtcttgagaccgc 25306348
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 42.1 bits (21), Expect = 0.61 Identities = 46/55 (83%) Strand = Plus / Plus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgc 185 ||||||||||| || || | || ||||||| ||| |||||| |||||||||||| Sbjct: 136958 accatgttggttagtgcaggtttcacctcggtgtatttgcgggtcttgagaccgc 137012
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 0.61 Identities = 26/28 (92%) Strand = Plus / Plus Query: 122 gcggcctngaccatgttggtgagggcgg 149 ||||||| ||||||||||| |||||||| Sbjct: 3542128 gcggcctcgaccatgttggcgagggcgg 3542155
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.61 Identities = 46/55 (83%) Strand = Plus / Minus Query: 131 accatgttggtgagggcggncttgacctcggcgtacttgcggntcttgagaccgc 185 ||||||||||| || || | || ||||||| ||| |||||| |||||||||||| Sbjct: 25397711 accatgttggttagtgcaggtttcacctcggtgtatttgcgggtcttgagaccgc 25397657
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 cgccttggcgagctcggcgcg 111 ||||||||||||||||||||| Sbjct: 384455 cgccttggcgagctcggcgcg 384475 Score = 38.2 bits (19), Expect = 9.5 Identities = 24/26 (92%) Strand = Plus / Minus Query: 167 ttgcggntcttgagaccgcagtcggg 192 |||||| ||||||| ||||||||||| Sbjct: 2998441 ttgcgggtcttgagcccgcagtcggg 2998416
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 0.61 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gggcggncttgacctcggcgtact 167 |||||| ||||||||||||||||| Sbjct: 1408386 gggcggccttgacctcggcgtact 1408363
>ref|XM_469072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1149 Score = 40.1 bits (20), Expect = 2.4 Identities = 28/31 (90%) Strand = Plus / Plus Query: 155 acctcggcgtacttgcggntcttgagaccgc 185 ||||||| ||| |||||| |||||||||||| Sbjct: 944 acctcggtgtatttgcgggtcttgagaccgc 974
>ref|XM_370215.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06712.4) partial mRNA Length = 2301 Score = 40.1 bits (20), Expect = 2.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 118 cttggcggcctngaccatgttggtgag 144 ||||||||| | ||||||||||||||| Sbjct: 2274 cttggcggcgttgaccatgttggtgag 2248
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cgccttggcgagctcggcgcggat 114 ||||||||||||||||| |||||| Sbjct: 61299 cgccttggcgagctcggggcggat 61276
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cgccttggcgagctcggcgcggat 114 ||||||||||||||||| |||||| Sbjct: 344059 cgccttggcgagctcggggcggat 344036
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 cgccttggcgagctcggcgcggat 114 ||||||||||||||||| |||||| Sbjct: 134631 cgccttggcgagctcggggcggat 134654
>ref|NM_208514.1| Eremothecium gossypii ABR212Cp (ABR212C), mRNA Length = 2307 Score = 40.1 bits (20), Expect = 2.4 Identities = 28/31 (90%) Strand = Plus / Minus Query: 116 tgcttggcggcctngaccatgttggtgaggg 146 ||||||||||| | ||||||||| ||||||| Sbjct: 2276 tgcttggcggcttcgaccatgtttgtgaggg 2246
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 2.4 Identities = 28/31 (90%) Strand = Plus / Plus Query: 116 tgcttggcggcctngaccatgttggtgaggg 146 ||||||||||| | ||||||||| ||||||| Sbjct: 802422 tgcttggcggcttcgaccatgtttgtgaggg 802452
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 102 gctcggcgcggatctgcttggcg 124 |||||||||||||||||| |||| Sbjct: 1519477 gctcggcgcggatctgctcggcg 1519455
>gb|AY422897.1| Uncultured proteobacterium clone F24 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds Length = 492 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 ccttggcgagctcggcgcg 111 ||||||||||||||||||| Sbjct: 259 ccttggcgagctcggcgcg 241
>gb|AC163638.2| Mus musculus BAC clone RP23-188H10 from chromosome 14, complete sequence Length = 203950 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 aacggtgacatcctccttg 46 ||||||||||||||||||| Sbjct: 130035 aacggtgacatcctccttg 130053
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gcgccttggcgagctcggc 108 ||||||||||||||||||| Sbjct: 99848 gcgccttggcgagctcggc 99866
>emb|AL031668.23|HS64K7 Human DNA sequence from clone RP1-64K7 on chromosome 20q11.21-11.23 Contains the EIF2S2 gene for eukaryotic translation initiation factor 2 subunit 2 (beta, 38kD), a novel gene, the 5' end of a novel gene, the 3' end of the RALY gene for RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow), the RPS2P1 gene for ribosomal protein S2 pseudogene 1 and two CpG islands, complete sequence Length = 139378 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 ctgcgccttggcgagctcggcgc 110 |||||||||||||||||| |||| Sbjct: 96088 ctgcgccttggcgagctctgcgc 96066
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 102 gctcggcgcggatctgcttggcg 124 |||||||||||||||||| |||| Sbjct: 2854223 gctcggcgcggatctgctcggcg 2854201
>gb|AE005950.1| Caulobacter crescentus CB15 section 276 of 359 of the complete genome Length = 12754 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 106 ggcgcggatctgcttggcggcct 128 ||||||||||| ||||||||||| Sbjct: 7030 ggcgcggatctccttggcggcct 7008
>dbj|AB228055.1| Aspergillus oryzae cDNA, contig sequence: AoEST4928 Length = 1139 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 cgagctcggcgcggatctg 117 ||||||||||||||||||| Sbjct: 364 cgagctcggcgcggatctg 346
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 cttggcgagctcggcgcggatct 116 ||||||||||||||||| ||||| Sbjct: 626102 cttggcgagctcggcgccgatct 626080
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 cgagctcggcgcggatctg 117 ||||||||||||||||||| Sbjct: 3172100 cgagctcggcgcggatctg 3172118
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 agctcggcgcggatctgct 119 ||||||||||||||||||| Sbjct: 3657858 agctcggcgcggatctgct 3657840
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 102 gctcggcgcggatctgcttggcg 124 |||||||||||||||||| |||| Sbjct: 384047 gctcggcgcggatctgctcggcg 384069
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 tcttgagaccgcagtcggg 192 ||||||||||||||||||| Sbjct: 1287116 tcttgagaccgcagtcggg 1287134
>gb|AF076927.1|AF076927 Homo sapiens eukaryotic initiation factor 2 beta subunit (EIF2S2) gene, promoter region; and partial cds Length = 2320 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 ctgcgccttggcgagctcggcgc 110 |||||||||||||||||| |||| Sbjct: 946 ctgcgccttggcgagctctgcgc 968
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 102 gctcggcgcggatctgcttggcg 124 |||||||||||||||||| |||| Sbjct: 305837 gctcggcgcggatctgctcggcg 305859
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 tcttgagaccgcagtcggg 192 ||||||||||||||||||| Sbjct: 1313140 tcttgagaccgcagtcggg 1313158
>gb|DQ149730.1| Uncultured soil bacterium clone CT0.35 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (cbbL) gene, partial cds Length = 492 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 ccttggcgagctcggcgcg 111 ||||||||||||||||||| Sbjct: 259 ccttggcgagctcggcgcg 241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 817,099 Number of Sequences: 3902068 Number of extensions: 817099 Number of successful extensions: 51806 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50942 Number of HSP's gapped (non-prelim): 861 length of query: 192 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 170 effective length of database: 17,147,199,772 effective search space: 2915023961240 effective search space used: 2915023961240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)