>RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 684

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 608 TGSLQKGVRDKIISLANRYMTEVRRLNLPQNQTDNVYRGFRDLEEKLL 465
           TG+L  G   +   L ++ +T V+ L+L QN+ D++     D+ ++L+
Sbjct: 305 TGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLM 352

>UVRC_HELHP (Q7VK73) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 621

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 596 QKGVRDKIISLANRYMTEVRRLNLPQNQTDNVYRGFRDLEEKLLSPY*PFFFLSSQHCKA 417
           Q+G +  ++ LA++   E+RRL+  QN T +     ++L      PY    F +S H   
Sbjct: 371 QRGAKKDLLQLAHKNALEIRRLHTQQNNTFSTLVSIKELCVLSQIPYSIEVFDTSHHSGT 430

Query: 416 KTSSGV 399
               G+
Sbjct: 431 HNVGGM 436

>VP40_VZVD (P09286) Capsid protein P40 (Virion structural gene 33 protein)|
           [Contains: Capsid protein VP24 (Assemblin) (Protease)
           (EC 3.4.21.97); Capsid protein VP22A; C-terminal
           peptide]
          Length = 605

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 401 HLKMSWLYSVERTKKRMANKEITISPLGHGNLGTHYLFGSVGDSIASPLSYTCSP 565
           +L  ++L SV  + KR++  EI       GN  TH     VG  + + ++Y C+P
Sbjct: 110 YLVTNYLPSVSLSSKRLSPNEIP-----DGNFFTHVALCVVGRRVGTVVNYDCTP 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,433,669
Number of Sequences: 219361
Number of extensions: 2056468
Number of successful extensions: 4661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4661
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)