Clone Information

BLAST Search Result

Clone Name	rbags17i21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	182	1e-42
2	dbj\|AK065114.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	182	1e-42
3	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	182	1e-42
4	emb\|AL928756.4\|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb...	182	1e-42
5	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	180	4e-42
6	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	180	4e-42
7	emb\|BX000499.1\|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa...	180	4e-42
8	gb\|AY105475.1\| Zea mays PCO126622 mRNA sequence	103	8e-19
9	emb\|BX511006.10\| Zebrafish DNA sequence from clone DKEY-106F13 i...	42	2.4
10	gb\|AC146218.2\| Pan troglodytes BAC clone CH251-267E2 from Y, com...	42	2.4
11	dbj\|BS000645.2\| Pan troglodytes chromosome Y clone: PTB-520M19, ...	42	2.4
12	dbj\|BS000535.1\| Pan troglodytes chromosome Y clone:PTB-096E06, c...	42	2.4
13	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	42	2.4
14	gb\|AC018677.3\|AC018677 Homo sapiens BAC clone RP11-264A13 from Y...	42	2.4
15	gb\|AY573853.1\| Porphyra leucosticta isolate 358 18S ribosomal RN...	40	9.4
16	gb\|DP000016.1\| Pan troglodytes target 1 genomic scaffold	40	9.4
17	gb\|AC183804.3\| Pan troglodytes BAC clone CH251-67P16 from chromo...	40	9.4
18	gb\|AC087264.3\| Pan troglodytes clone RP43-150N19, complete sequence	40	9.4
19	gb\|AC002543.1\| Homo sapiens BAC clone CTA-300C3 from 7, complete...	40	9.4
20	gb\|AC142297.1\| Pan troglodytes BAC clone RP43-98C12 from 7, comp...	40	9.4
21	emb\|CR589881.11\| Zebrafish DNA sequence from clone DKEY-188M1 in...	40	9.4
22	emb\|Z92545.1\|HS50A13 Human DNA sequence from clone RP1-50A13 on ...	40	9.4
23	emb\|BX537254.7\| Human DNA sequence from clone RP6-74O6 on chromo...	40	9.4
24	emb\|BX511042.2\| Human DNA sequence from clone RP11-300L20 on chr...	40	9.4
25	emb\|AL627133.5\| Human DNA sequence from clone RP11-378O9 on chro...	40	9.4
26	ref\|XM_968741.1\| PREDICTED: Tribolium castaneum similar to Sider...	40	9.4
27	gb\|AC117470.8\| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cance...	40	9.4
28	emb\|X97735.1\|PPFPR1 P.pygmaeus DNA for N-formyl peptide receptor	40	9.4
29	dbj\|AK095728.1\| Homo sapiens cDNA FLJ38409 fis, clone FEBRA2009240	40	9.4
30	gb\|AF391293.1\| Branchiostoma floridae cosmid MPMGc117K0849, part...	40	9.4
31	gb\|AC104570.3\| Homo sapiens chromosome 11, clone RP11-148I19, co...	40	9.4
32	gb\|AC099685.2\| Homo sapiens chromosome 8, clone RP11-87N16, comp...	40	9.4
33	gb\|AC021733.12\| Homo sapiens chromosome 8, clone RP11-775B15, co...	40	9.4
34	gb\|AC090451.6\| Homo sapiens chromosome 8, clone RP11-318N11, com...	40	9.4
35	gb\|AC020896.6\| Homo sapiens chromosome 5 clone CTC-347C20, compl...	40	9.4
36	gb\|AC022257.19\| Homo sapiens chromosome 8, clone RP11-715M14, co...	40	9.4
37	gb\|AC063979.4\|AC063979 Homo sapiens chromosome 5 clone RP11-474H...	40	9.4
38	gb\|AC016745.6\| Homo sapiens BAC clone RP11-480C16 from 2, comple...	40	9.4
39	gb\|AC090141.9\| Homo sapiens chromosome 8, clone RP11-140A18, com...	40	9.4
40	gb\|AC177793.1\| Pan troglodytes chromosome X clone CH251-542N20 m...	40	9.4
41	gb\|AC008268.3\|AC008268 Homo sapiens BAC clone RP11-34G16 from 2,...	40	9.4
42	gb\|AC008843.5\|AC008843 Homo sapiens chromosome 5 clone CTD-2156N...	40	9.4
43	emb\|AJ328147.1\|HSA328147 Homo sapiens genomic sequence surroundi...	40	9.4
44	emb\|AL160237.4\|CNS01RH1 Human chromosome 14 DNA sequence BAC R-3...	40	9.4
45	emb\|AL122125.4\|CNS01DT0 Human chromosome 14 DNA sequence BAC R-1...	40	9.4
46	dbj\|AP003558.3\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	9.4
47	gb\|AC171177.2\| Gallus gallus BAC clone CH261-178G24 from chromos...	40	9.4
48	emb\|AL935158.7\| Zebrafish DNA sequence from clone CH211-232G13, ...	40	9.4
49	emb\|AJ343146.1\|HSA343146 Homo sapiens genomic sequence surroundi...	40	9.4
50	emb\|AJ343819.1\|HSA343819 Homo sapiens genomic sequence surroundi...	40	9.4
51	emb\|AJ343799.1\|HSA343799 Homo sapiens genomic sequence surroundi...	40	9.4
52	emb\|AJ343663.1\|HSA343663 Homo sapiens genomic sequence surroundi...	40	9.4
53	emb\|AJ343580.1\|HSA343580 Homo sapiens genomic sequence surroundi...	40	9.4
54	emb\|AJ343579.1\|HSA343579 Homo sapiens genomic sequence surroundi...	40	9.4
55	emb\|AJ343573.1\|HSA343573 Homo sapiens genomic sequence surroundi...	40	9.4
56	emb\|AJ343572.1\|HSA343572 Homo sapiens genomic sequence surroundi...	40	9.4
57	emb\|AJ342731.1\|HSA342731 Homo sapiens genomic sequence surroundi...	40	9.4
58	emb\|AJ342724.1\|HSA342724 Homo sapiens genomic sequence surroundi...	40	9.4
59	gb\|AC092470.9\| Homo sapiens 12 BAC RP11-72J9 (Roswell Park Cance...	40	9.4
60	dbj\|AP004249.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	9.4
61	emb\|AL844549.4\| Human DNA sequence from clone RP11-308M7 on chro...	40	9.4

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/207 (85%)
 Strand = Plus / Minus

                                                                           
Query: 483     gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 542
               ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 2238179 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 2238120

                                                                           
Query: 543     tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 602
               |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 2238119 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 2238060

                                                                           
Query: 603     tccggggagtgtctcttggctttcaggaagtcctccctcgcggattctgtctggccgagc 662
               || || || |   ||||||| ||||||||||||||||| || |||||||| || || || 
Sbjct: 2238059 tctggagaatacttcttggccttcaggaagtcctcccttgctgattctgtttgaccaagt 2238000

                                          
Query: 663     tcggctctagcttttncacgtctgaac 689
               || |||||||||||| | |||||||||
Sbjct: 2237999 tcagctctagcttttcctcgtctgaac 2237973

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>dbj|AK065114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O06, full
            insert sequence
          Length = 1396

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/207 (85%)
 Strand = Plus / Minus

                                                                        
Query: 483  gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 542
            ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 1126 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 1067

                                                                        
Query: 543  tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 602
            |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 1066 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 1007

                                                                        
Query: 603  tccggggagtgtctcttggctttcaggaagtcctccctcgcggattctgtctggccgagc 662
            || || || |   ||||||| ||||||||||||||||| || |||||||| || || || 
Sbjct: 1006 tctggagaatacttcttggccttcaggaagtcctcccttgctgattctgtttgaccaagt 947

                                       
Query: 663  tcggctctagcttttncacgtctgaac 689
            || |||||||||||| | |||||||||
Sbjct: 946  tcagctctagcttttcctcgtctgaac 920

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/207 (85%)
 Strand = Plus / Minus

                                                                           
Query: 483     gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 542
               ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 2238123 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 2238064

                                                                           
Query: 543     tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 602
               |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 2238063 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 2238004

                                                                           
Query: 603     tccggggagtgtctcttggctttcaggaagtcctccctcgcggattctgtctggccgagc 662
               || || || |   ||||||| ||||||||||||||||| || |||||||| || || || 
Sbjct: 2238003 tctggagaatacttcttggccttcaggaagtcctcccttgctgattctgtttgaccaagt 2237944

                                          
Query: 663     tcggctctagcttttncacgtctgaac 689
               || |||||||||||| | |||||||||
Sbjct: 2237943 tcagctctagcttttcctcgtctgaac 2237917

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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132703

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/207 (85%)
 Strand = Plus / Minus

                                                                          
Query: 483    gccttgggtttgggttgaggcctcggcccgaacagacctttgtatagctccctctgcttc 542
              ||||| |||||||||| |||||| ||||||||||||||||||||||||||| | || |||
Sbjct: 120403 gccttcggtttgggttcaggccttggcccgaacagacctttgtatagctccttttgtttc 120344

                                                                          
Query: 543    tggtacagcgctttatcttgttccgctagcgaccgaagctcccgcatgatctccttgtct 602
              |||||||| |||||||| || ||||| |||||||||||||| |||  |||||||||||||
Sbjct: 120343 tggtacagagctttatcctgctccgcgagcgaccgaagctcgcgctggatctccttgtct 120284

                                                                          
Query: 603    tccggggagtgtctcttggctttcaggaagtcctccctcgcggattctgtctggccgagc 662
              || || || |   ||||||| ||||||||||||||||| || |||||||| || || || 
Sbjct: 120283 tctggagaatacttcttggccttcaggaagtcctcccttgctgattctgtttgaccaagt 120224

                                         
Query: 663    tcggctctagcttttncacgtctgaac 689
              || |||||||||||| | |||||||||
Sbjct: 120223 tcagctctagcttttcctcgtctgaac 120197

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  180 bits (91), Expect = 4e-42
 Identities = 207/246 (84%)
 Strand = Plus / Minus

                                                                           
Query: 444     gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 503
               ||||| ||||||||||||||| | |||  | |||||   ||||| ||||||||||  |||
Sbjct: 2216370 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 2216311

                                                                           
Query: 504     ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 563
               || || || || || |||||||| |||||| |||| || |||||||| |||||||| |||
Sbjct: 2216310 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 2216251

                                                                           
Query: 564     tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 623
               ||||| || ||||||||||| |||  ||||||||||||||| ||||| ||| ||||||||
Sbjct: 2216250 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 2216191

                                                                           
Query: 624     ttcaggaagtcctccctcgcggattctgtctggccgagctcggctctagcttttncacgt 683
               |||||||||||||||||||| ||||||||||| || || || ||||| |||||| | |||
Sbjct: 2216190 ttcaggaagtcctccctcgctgattctgtctgaccaagttcagctcttgcttttcctcgt 2216131

                     
Query: 684     ctgaac 689
               ||||||
Sbjct: 2216130 ctgaac 2216125

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  180 bits (91), Expect = 4e-42
 Identities = 207/246 (84%)
 Strand = Plus / Minus

                                                                           
Query: 444     gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 503
               ||||| ||||||||||||||| | |||  | |||||   ||||| ||||||||||  |||
Sbjct: 2224151 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 2224092

                                                                           
Query: 504     ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 563
               || || || || || |||||||| |||||| |||| || |||||||| |||||||| |||
Sbjct: 2224091 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 2224032

                                                                           
Query: 564     tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 623
               ||||| || ||||||||||| |||  ||||||||||||||| ||||| ||| ||||||||
Sbjct: 2224031 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 2223972

                                                                           
Query: 624     ttcaggaagtcctccctcgcggattctgtctggccgagctcggctctagcttttncacgt 683
               |||||||||||||||||||| ||||||||||| || || || ||||| |||||| | |||
Sbjct: 2223971 ttcaggaagtcctccctcgctgattctgtctgaccaagttcagctcttgcttttcctcgt 2223912

                     
Query: 684     ctgaac 689
               ||||||
Sbjct: 2223911 ctgaac 2223906

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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 125593

 Score =  180 bits (91), Expect = 4e-42
 Identities = 207/246 (84%)
 Strand = Plus / Minus

                                                                          
Query: 444    gacaccagccactgccagaagaggacggcgaaatttttggccttgggtttgggttgaggc 503
              ||||| ||||||||||||||| | |||  | |||||   ||||| ||||||||||  |||
Sbjct: 113064 gacacgagccactgccagaagcgaacgatggaatttgacgccttcggtttgggttcgggc 113005

                                                                          
Query: 504    ctcggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgt 563
              || || || || || |||||||| |||||| |||| || |||||||| |||||||| |||
Sbjct: 113004 cttggaccaaagaggcctttgtacagctccttctgtttttggtacagagctttatcctgt 112945

                                                                          
Query: 564    tccgctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggct 623
              ||||| || ||||||||||| |||  ||||||||||||||| ||||| ||| ||||||||
Sbjct: 112944 tccgcgagagaccgaagctcacgctggatctccttgtcttctggggaatgtttcttggct 112885

                                                                          
Query: 624    ttcaggaagtcctccctcgcggattctgtctggccgagctcggctctagcttttncacgt 683
              |||||||||||||||||||| ||||||||||| || || || ||||| |||||| | |||
Sbjct: 112884 ttcaggaagtcctccctcgctgattctgtctgaccaagttcagctcttgcttttcctcgt 112825

                    
Query: 684    ctgaac 689
              ||||||
Sbjct: 112824 ctgaac 112819

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>gb|AY105475.1| Zea mays PCO126622 mRNA sequence
          Length = 1363

 Score =  103 bits (52), Expect = 8e-19
 Identities = 129/152 (84%), Gaps = 2/152 (1%)
 Strand = Plus / Minus

                                                                        
Query: 507  ggcccgaacagacctttgtatagctccctctgcttctggtacagcgctttatcttgttcc 566
            ||||| || ||||||||||| |||||| ||||||||||||| || || || |||||||||
Sbjct: 1115 ggcccaaagagacctttgtagagctccttctgcttctggta-agtgccttgtcttgttcc 1057

                                                                        
Query: 567  gctagcgaccgaagctcccgcatgatctccttgtcttccggggagtgtctcttggctttc 626
            || ||| | || |||||||| ||||||||||||||||| |||||||   |||| ||||| 
Sbjct: 1056 gcgagcaaacggagctcccgaatgatctccttgtcttctggggagtacttcttcgctttg 997

                                            
Query: 627  aggaagtcctccctcgcggattctgtctggcc 658
            ||||| || |||||||| | ||||||||||||
Sbjct: 996  aggaaatcttccctcgctg-ttctgtctggcc 966

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>emb|BX511006.10| Zebrafish DNA sequence from clone DKEY-106F13 in linkage group 7,
              complete sequence
          Length = 220514

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 199    cttcacaaacacaaagagaccatcc 223
              ||||||||||||| |||||||||||
Sbjct: 206954 cttcacaaacacacagagaccatcc 206978

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>gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, complete sequence
          Length = 203014

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    aatcatgtcctttgcaaacag 76
             |||||||||||||||||||||
Sbjct: 41261 aatcatgtcctttgcaaacag 41281

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>dbj|BS000645.2| Pan troglodytes chromosome Y clone: PTB-520M19, complete sequence
          Length = 166301

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     aatcatgtcctttgcaaacag 76
              |||||||||||||||||||||
Sbjct: 115545 aatcatgtcctttgcaaacag 115525

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>dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, complete sequences
          Length = 198405

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    aatcatgtcctttgcaaacag 76
             |||||||||||||||||||||
Sbjct: 30575 aatcatgtcctttgcaaacag 30595

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 56       aatcatgtcctttgcaaacag 76
                |||||||||||||||||||||
Sbjct: 19316850 aatcatgtcctttgcaaacag 19316870

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>gb|AC018677.3|AC018677 Homo sapiens BAC clone RP11-264A13 from Y, complete sequence
          Length = 103108

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    aatcatgtcctttgcaaacag 76
             |||||||||||||||||||||
Sbjct: 77635 aatcatgtcctttgcaaacag 77655

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>gb|AY573853.1| Porphyra leucosticta isolate 358 18S ribosomal RNA gene, putative
           group ICI intron
          Length = 544

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 ggaaggaagggcattctgaa 178
           ||||||||||||||||||||
Sbjct: 461 ggaaggaagggcattctgaa 480

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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 690669 cagaatcatgtcatttgcaaacag 690692

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>gb|AC183804.3| Pan troglodytes BAC clone CH251-67P16 from chromosome 2, complete
              sequence
          Length = 169437

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    gttatccaagtggaaggaag 167
              ||||||||||||||||||||
Sbjct: 108570 gttatccaagtggaaggaag 108589

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>gb|AC087264.3| Pan troglodytes clone RP43-150N19, complete sequence
          Length = 116671

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 110362 cagaatcatgtcatttgcaaacag 110385

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>gb|AC002543.1| Homo sapiens BAC clone CTA-300C3 from 7, complete sequence
          Length = 150147

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    cagaatcatgtcctttgcaaacag 76
             |||||||||||| |||||||||||
Sbjct: 32843 cagaatcatgtcatttgcaaacag 32866

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>gb|AC142297.1| Pan troglodytes BAC clone RP43-98C12 from 7, complete sequence
          Length = 137928

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 133225 cagaatcatgtcatttgcaaacag 133202

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>emb|CR589881.11| Zebrafish DNA sequence from clone DKEY-188M1 in linkage group 14,
             complete sequence
          Length = 179964

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    agcctaatcaaggaggctcaccag 55
             |||||||||||| |||||||||||
Sbjct: 54209 agcctaatcaagaaggctcaccag 54186

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>emb|Z92545.1|HS50A13 Human DNA sequence from clone RP1-50A13 on chromosome Xp11-21 Contains
             a pseudogene similar to part of ribosomal protein S4,
             X-linked (RPS4X) and an ATP synthase, H+ transporting,
             mitochondrial F0 complex, subunit c (subunit 9), isoform 1
             (ATP5G1) pseudogene, complete sequence
          Length = 131735

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    cagaatcatgtcctttgcaaacag 76
             |||||||||||| |||||||||||
Sbjct: 66497 cagaatcatgtcgtttgcaaacag 66474

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>emb|BX537254.7| Human DNA sequence from clone RP6-74O6 on chromosome 1 Contains the 3'
             end of the putative G-protein coupled receptor (SH120), a
             novel gene and four CpG islands, complete sequence
          Length = 121309

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aacactctgccttccctgtg 140
             ||||||||||||||||||||
Sbjct: 20620 aacactctgccttccctgtg 20601

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>emb|BX511042.2| Human DNA sequence from clone RP11-300L20 on chromosome 1 Contains part
             of the gene for putative G-protein coupled receptor SH120,
             complete sequence
          Length = 47106

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aacactctgccttccctgtg 140
             ||||||||||||||||||||
Sbjct: 38904 aacactctgccttccctgtg 38923

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>emb|AL627133.5| Human DNA sequence from clone RP11-378O9 on chromosome X, complete
             sequence
          Length = 129007

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    cagaatcatgtcctttgcaa 72
             ||||||||||||||||||||
Sbjct: 55009 cagaatcatgtcctttgcaa 54990

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>ref|XM_968741.1| PREDICTED: Tribolium castaneum similar to Sideroflexin-3
           (LOC662657), mRNA
          Length = 1049

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 449 cagccactgccagaagaggacggc 472
           ||||||||||||||||| ||||||
Sbjct: 360 cagccactgccagaagatgacggc 337

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>gb|AC117470.8| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190630

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    gcaaaattccacaccaaaacatta 267
              ||||||||||||| ||||||||||
Sbjct: 100060 gcaaaattccacaacaaaacatta 100083

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>emb|X97735.1|PPFPR1 P.pygmaeus DNA for N-formyl peptide receptor
          Length = 1040

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 489 ggtttgggttgaggcctcgg 508
           ||||||||||||||||||||
Sbjct: 984 ggtttgggttgaggcctcgg 965

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>dbj|AK095728.1| Homo sapiens cDNA FLJ38409 fis, clone FEBRA2009240
          Length = 3082

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  gcaaaattccacaccaaaacatta 267
            ||||||||||||| ||||||||||
Sbjct: 1026 gcaaaattccacaacaaaacatta 1049

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>gb|AF391293.1| Branchiostoma floridae cosmid MPMGc117K0849, partial sequence
          Length = 36049

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   cattatgctcaagtatatgg 282
             ||||||||||||||||||||
Sbjct: 35218 cattatgctcaagtatatgg 35237

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>gb|AC104570.3| Homo sapiens chromosome 11, clone RP11-148I19, complete sequence
          Length = 172683

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 138843 cagaatcatgtcatttgcaaacag 138820

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>gb|AC099685.2| Homo sapiens chromosome 8, clone RP11-87N16, complete sequence
          Length = 182413

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    atcatgtcctttgcaaacag 76
             ||||||||||||||||||||
Sbjct: 49307 atcatgtcctttgcaaacag 49288

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>gb|AC021733.12| Homo sapiens chromosome 8, clone RP11-775B15, complete sequence
          Length = 158341

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ccagaatcatgtcctttgca 71
             ||||||||||||||||||||
Sbjct: 44994 ccagaatcatgtcctttgca 45013

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>gb|AC090451.6| Homo sapiens chromosome 8, clone RP11-318N11, complete sequence
          Length = 160671

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ccagaatcatgtcctttgca 71
              ||||||||||||||||||||
Sbjct: 156781 ccagaatcatgtcctttgca 156800

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>gb|AC020896.6| Homo sapiens chromosome 5 clone CTC-347C20, complete sequence
          Length = 169835

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 152036 cagaatcatgtcgtttgcaaacag 152059

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>gb|AC022257.19| Homo sapiens chromosome 8, clone RP11-715M14, complete sequence
          Length = 174545

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   gaaactgcacttccaatctt 201
             ||||||||||||||||||||
Sbjct: 60448 gaaactgcacttccaatctt 60467

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>gb|AC063979.4|AC063979 Homo sapiens chromosome 5 clone RP11-474H20, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 100916 cagaatcatgtcgtttgcaaacag 100893

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>gb|AC016745.6| Homo sapiens BAC clone RP11-480C16 from 2, complete sequence
          Length = 157358

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gttatccaagtggaaggaag 167
             ||||||||||||||||||||
Sbjct: 26088 gttatccaagtggaaggaag 26069

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>gb|AC090141.9| Homo sapiens chromosome 8, clone RP11-140A18, complete sequence
          Length = 156054

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    gaaactgcacttccaatctt 201
              ||||||||||||||||||||
Sbjct: 152875 gaaactgcacttccaatctt 152894



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   gaaactgcacttccaatctt 201
             ||||||||||||||||||||
Sbjct: 18484 gaaactgcacttccaatctt 18465

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>gb|AC177793.1| Pan troglodytes chromosome X clone CH251-542N20 map human ortholog p11.4,
              complete sequence
          Length = 167413

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     cagaatcatgtcctttgcaaacag 76
              |||||||||||| |||||||||||
Sbjct: 164148 cagaatcatgtcgtttgcaaacag 164171

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>gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2, complete sequence
          Length = 187883

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gttatccaagtggaaggaag 167
             ||||||||||||||||||||
Sbjct: 78918 gttatccaagtggaaggaag 78899

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>gb|AC008843.5|AC008843 Homo sapiens chromosome 5 clone CTD-2156N14, complete sequence
          Length = 121063

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    cagaatcatgtcctttgcaaacag 76
             |||||||||||| |||||||||||
Sbjct: 47976 cagaatcatgtcgtttgcaaacag 47953

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>emb|AJ328147.1|HSA328147 Homo sapiens genomic sequence surrounding NotI site, clone NL6-IN5R
          Length = 410

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AL160237.4|CNS01RH1 Human chromosome 14 DNA sequence BAC R-388E23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 206533

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     cagaatcatgtcctttgcaa 72
              ||||||||||||||||||||
Sbjct: 128753 cagaatcatgtcctttgcaa 128772

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>emb|AL122125.4|CNS01DT0 Human chromosome 14 DNA sequence BAC R-102G14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188849

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     cagaatcatgtcctttgcaa 72
              ||||||||||||||||||||
Sbjct: 164660 cagaatcatgtcctttgcaa 164679

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>dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-693A6, complete
             sequence
          Length = 182976

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gaagggcattctgaacctga 183
             ||||||||||||||||||||
Sbjct: 65937 gaagggcattctgaacctga 65918

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>gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromosome ul, complete
             sequence
          Length = 203278

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 442   gtgacaccagccactgccagaaga 465
             |||||| |||||||||||||||||
Sbjct: 17040 gtgacagcagccactgccagaaga 17017

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>emb|AL935158.7| Zebrafish DNA sequence from clone CH211-232G13, complete sequence
          Length = 149973

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     agcctaatcaaggaggctcaccag 55
              |||||||||||| |||||||||||
Sbjct: 142496 agcctaatcaagaaggctcaccag 142519

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>emb|AJ343146.1|HSA343146 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-HF14RS
          Length = 598

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ343819.1|HSA343819 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-LI19RS
          Length = 716

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ343799.1|HSA343799 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-GI19RS
          Length = 770

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ343663.1|HSA343663 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-CA14RS
          Length = 953

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ343580.1|HSA343580 Homo sapiens genomic sequence surrounding NotI site, clone NB6-816R
          Length = 805

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 302 gaaactgcacttccaatctt 321

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>emb|AJ343579.1|HSA343579 Homo sapiens genomic sequence surrounding NotI site, clone NB6-844R
          Length = 691

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ343573.1|HSA343573 Homo sapiens genomic sequence surrounding NotI site, clone JNB-318R
          Length = 451

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ343572.1|HSA343572 Homo sapiens genomic sequence surrounding NotI site, clone JNB-093R
          Length = 450

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ342731.1|HSA342731 Homo sapiens genomic sequence surrounding NotI site, clone NB6-556
          Length = 806

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 303 gaaactgcacttccaatctt 322

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>emb|AJ342724.1|HSA342724 Homo sapiens genomic sequence surrounding NotI site, clone NB6-626R
          Length = 989

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 gaaactgcacttccaatctt 201
           ||||||||||||||||||||
Sbjct: 304 gaaactgcacttccaatctt 323

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>gb|AC092470.9| Homo sapiens 12 BAC RP11-72J9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96100

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    cagaatcatgtcctttgcaa 72
             ||||||||||||||||||||
Sbjct: 90290 cagaatcatgtcctttgcaa 90309

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>dbj|AP004249.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-743I15, complete
              sequences
          Length = 191109

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gaagggcattctgaacctga 183
              ||||||||||||||||||||
Sbjct: 160923 gaagggcattctgaacctga 160904

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>emb|AL844549.4| Human DNA sequence from clone RP11-308M7 on chromosome 1, complete
             sequence
          Length = 21983

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aacactctgccttccctgtg 140
             ||||||||||||||||||||
Sbjct: 20142 aacactctgccttccctgtg 20123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,510,502
Number of Sequences: 3902068
Number of extensions: 5510502
Number of successful extensions: 120892
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120550
Number of HSP's gapped (non-prelim): 334
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result