>RBCMT_ARATH (Q9XI84) Probable ribulose-1,5 bisphosphate carboxylase/oxygenase|
           large subunit N-methyltransferase, chloroplast precursor
           (EC 2.1.1.127) ([Ribulose-bisphosphate
           carboxylase]-lysine N-methyltransferase) (RuBisCO
           methyltransferase) (RuBisco LS
          Length = 482

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
 Frame = -2

Query: 639 MLPYLRLGYISDPDEMQCILSSEGDTC-------PVSPCSERAVLDQLVVYLKSRLAGYP 481
           ML YLRL  +  PD    +L S  +         PVS  +E  +   +    KS L+G+ 
Sbjct: 349 MLQYLRLVALGGPDAF--LLESIFNNTIWGHLELPVSRTNEELICRVVRDACKSALSGFD 406

Query: 480 TNLDEDEAMLADGSLEPKKEVATRLVRLEKKML 382
           T ++EDE +L  G LEP+ E+A ++   EK++L
Sbjct: 407 TTIEEDEKLLDKGKLEPRLEMALKIRIGEKRVL 439

>RBCMT_TOBAC (P94026) Ribulose-1,5 bisphosphate carboxylase/oxygenase large|
           subunit N-methyltransferase, chloroplast precursor (EC
           2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine
           N-methyltransferase) (RuBisCO methyltransferase)
           (RuBisco LSMT) (rbcM
          Length = 491

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
 Frame = -2

Query: 639 MLPYLRLGYISDPDE--MQCILSSE--GDT-CPVSPCSERAVLDQLVVYLKSRLAGYPTN 475
           M+PYLRL  +   D   ++ I  +   G    PVS  +E  +   +    KS L+GY T 
Sbjct: 358 MIPYLRLVALGGTDAFLLESIFRNSVWGHLGLPVSRANEELICKVVRDACKSALSGYHTT 417

Query: 474 LDEDEAMLADGSLEPKKEVATRLVRLEKKML 382
           ++EDE ++ +G+L  + ++A  +   EK++L
Sbjct: 418 IEEDEKLMEEGNLSTRLQIAVGIRLGEKRVL 448

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -2

Query: 618 GYISDPDEMQCILSSEGDTCPVSPCSERAVLDQLVVYLKSRLAGYPTNLD 469
           GY  D D+  CI   + D C  SPC ++A  +    Y  S  AGY  N D
Sbjct: 363 GYELDEDQKTCI---DIDDCANSPCCQQACANTPGGYECSCFAGYRLNTD 409

>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic|
           region
          Length = 551

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
 Frame = +2

Query: 335 SGKPLMNSLAASRQPCSIFF-SNLTSLVATSFFGSKLPSANIASSSSKLVG*PANLDFRY 511
           S   + +S++ S    S++  S+ TS   +S   S+L S++ +SSSS      ++  F Y
Sbjct: 186 SSSLISSSISTSVSTSSVYVPSSSTSSPPSS--SSELTSSSYSSSSS------SSTLFSY 237

Query: 512 TTSWSSTARSEQGLTGHVSPSDESIH-----CISSGSEMYPSLKYGSIS 643
           ++S+SS++ S    +   S S  S         SS S +Y S  Y S S
Sbjct: 238 SSSFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFS 286

>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)|
          Length = 734

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -2

Query: 504 KSRLAGYPTNLDEDEAMLADGSLEPKKEVATRLVRLEKKMLHGCLEAANEFISGLPDHTV 325
           K+R     TNL + + +L +G L   +E  +R V +   M H  ++AA    S   D+ V
Sbjct: 90  KARREKRQTNLQKGKQLLREGKLAEARECFSRSVNITSSMAHEVIKAAR---SEGVDYIV 146

Query: 324 SPCPA 310
           +P  A
Sbjct: 147 APYEA 151

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = +2

Query: 296 SGAYSAGQGDTV*SGKPLMNSLAASRQPCSIFFSNLTSLVATSFFGSKLPSANIASSSSK 475
           S A S+    T  S     +SLA+S        ++ TS  ATS   S   ++N A+SSS 
Sbjct: 174 SSATSSSLSSTAASNSATSSSLASSS------LNSTTSATATSSSLSSTAASNSATSSSL 227

Query: 476 LVG*PANLDFRYTTSWSSTARSEQGLTGHVSP--SDESIHCISSGSEMYPSLKYGSIS 643
                A+     TTS ++T+ S        +P  S  S    +S S    S +Y + S
Sbjct: 228 -----ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSS 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,687,076
Number of Sequences: 219361
Number of extensions: 1719846
Number of successful extensions: 4107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4106
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)