| Clone Name | rbags17i03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134J07, full insert sequence Length = 1886 Score = 339 bits (171), Expect = 7e-90 Identities = 312/359 (86%) Strand = Plus / Minus Query: 284 tcttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaag 343 ||||||||||||||||||||| || | ||||||||||||||||| || || |||||||| Sbjct: 1591 tcttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaa 1532 Query: 344 ccacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacctt 403 || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || ||| Sbjct: 1531 tcatttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatctt 1472 Query: 404 acaagtctagtagcaacttctttctttggttccaaactgccatcggccaacattgcttca 463 ||||| |||||||| ||||| || |||||||||||| ||||||| |||||||| || ||| Sbjct: 1471 acaagcctagtagcgacttccttttttggttccaaattgccatctgccaacatagcatca 1412 Query: 464 tcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagttgg 523 |||||||||||| | || |||||| ||||||||| ||| | || ||| ||||||||||| Sbjct: 1411 tcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagttgg 1352 Query: 524 tccagtacagctcgctctgagcaaggactaactggacatgtatcaccttccgacgaaagt 583 || ||||| |||||||||| ||| ||||| |||||||||||||||||||| || |||||| Sbjct: 1351 tcaagtactgctcgctctgtgcatggactgactggacatgtatcaccttctgaagaaagt 1292 Query: 584 atacattgcatttcatctggatctgaaatgtatcctagtctcaagtatggcagcatttc 642 || |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 1291 atggattgcatttcatctggatctgaaatgtatcctagcctcaaatagggcagcatttc 1233
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 285 cttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaagc 344 |||||||||||||||||||| || | ||||||||||||||||| || || |||||||| Sbjct: 7550071 cttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaat 7550012 Query: 345 cacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacctta 404 || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || |||| Sbjct: 7550011 catttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatctta 7549952 Query: 405 caagtctagtagcaacttctttctttggttccaaactgccatcggccaac 454 |||| |||||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 7549951 caagcctagtagcgacttccttttttggttccaaattgccatctgccaac 7549902 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 549 gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 608 |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 7548927 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 7548868 Query: 609 aaatgtatcctagtctcaagtatggcagcatttc 642 ||||||||||||| ||||| || ||||||||||| Sbjct: 7548867 aaatgtatcctagcctcaaatagggcagcatttc 7548834 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 461 tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 520 ||||||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||| Sbjct: 7549801 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 7549742 Query: 521 tggtccagtacagctcgctctgagcaaggact 552 ||||| ||||| |||||||||| ||| ||||| Sbjct: 7549741 tggtcaagtactgctcgctctgtgcatggact 7549710
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 285 cttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaagc 344 |||||||||||||||||||| || | ||||||||||||||||| || || |||||||| Sbjct: 7549950 cttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaat 7549891 Query: 345 cacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacctta 404 || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || |||| Sbjct: 7549890 catttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatctta 7549831 Query: 405 caagtctagtagcaacttctttctttggttccaaactgccatcggccaac 454 |||| |||||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 7549830 caagcctagtagcgacttccttttttggttccaaattgccatctgccaac 7549781 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 549 gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 608 |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 7548806 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 7548747 Query: 609 aaatgtatcctagtctcaagtatggcagcatttc 642 ||||||||||||| ||||| || ||||||||||| Sbjct: 7548746 aaatgtatcctagcctcaaatagggcagcatttc 7548713 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 461 tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 520 ||||||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||| Sbjct: 7549680 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 7549621 Query: 521 tggtccagtacagctcgctctgagcaaggact 552 ||||| ||||| |||||||||| ||| ||||| Sbjct: 7549620 tggtcaagtactgctcgctctgtgcatggact 7549589
>emb|AL731872.2|CNS08C8C Oryza sativa chromosome 12, . BAC OJ1003_E07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113215 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 285 cttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaagc 344 |||||||||||||||||||| || | ||||||||||||||||| || || |||||||| Sbjct: 38138 cttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaat 38079 Query: 345 cacttatgaactcgttagcagcctcaagacagccatgcagcattttcttctctaacctta 404 || |||||||||| |||||||||| ||||| ||||||| || ||||||||| || |||| Sbjct: 38078 catttatgaactcattagcagcctggagacaaccatgcaacaatttcttctccaatctta 38019 Query: 405 caagtctagtagcaacttctttctttggttccaaactgccatcggccaac 454 |||| |||||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 38018 caagcctagtagcgacttccttttttggttccaaattgccatctgccaac 37969 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 549 gactaactggacatgtatcaccttccgacgaaagtatacattgcatttcatctggatctg 608 |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 36994 gacttactggacatgtatcaccttctgaagaaagtatggattgcatttcatctggatctg 36935 Query: 609 aaatgtatcctagtctcaagtatggcagcatttc 642 ||||||||||||| ||||| || ||||||||||| Sbjct: 36934 aaatgtatcctagcctcaaatagggcagcatttc 36901 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 461 tcatcctcatccaaattagtcggataaccagccaatcttgatttcaggtacacaacaagt 520 ||||||||||||||| | || |||||| ||||||||| ||| | || ||| |||||||| Sbjct: 37868 tcatcctcatccaaagttgttggataatcagccaatcgtgactccaagtatccaacaagt 37809 Query: 521 tggtccagtacagctcgctctgagcaaggact 552 ||||| ||||| |||||||||| ||| ||||| Sbjct: 37808 tggtcaagtactgctcgctctgtgcatggact 37777
>ref|XM_708603.1| Candida albicans SC5314 hypothetical protein (CaO19.8649), mRNA Length = 2550 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 414 tagcaacttctttctttggttc 435 |||||||||||||||||||||| Sbjct: 1843 tagcaacttctttctttggttc 1822
>ref|XM_708558.1| Candida albicans SC5314 hypothetical protein (CaO19.1047), mRNA Length = 2550 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 414 tagcaacttctttctttggttc 435 |||||||||||||||||||||| Sbjct: 1843 tagcaacttctttctttggttc 1822
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 16 aaaatggaaagtgagcatgtacgaag 41 |||||||||||||||||||| ||||| Sbjct: 89489 aaaatggaaagtgagcatgtgcgaag 89464
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 16 aaaatggaaagtgagcatgtacgaag 41 |||||||||||||||||||| ||||| Sbjct: 3807693 aaaatggaaagtgagcatgtgcgaag 3807668
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 16 aaaatggaaagtgagcatgtacgaag 41 |||||||||||||||||||| ||||| Sbjct: 3807614 aaaatggaaagtgagcatgtgcgaag 3807589
>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence Length = 158354 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 418 aacttctttctttggttccaaactg 442 ||||||||||||| ||||||||||| Sbjct: 80488 aacttctttcttttgttccaaactg 80512
>gb|AC136973.16| Medicago truncatula clone mth2-24n22, complete sequence Length = 109432 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 atgctaactctcaatcatcatagtg 79 ||||||||||||||| ||||||||| Sbjct: 711 atgctaactctcaataatcatagtg 735
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence Length = 176095 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 486 aaccagccaatcttgatttcaggtacaca 514 ||||||||||||||||||| || |||||| Sbjct: 5406 aaccagccaatcttgattttagatacaca 5434
>gb|AC010634.6| Homo sapiens chromosome 5 clone CTD-2318H23, complete sequence Length = 118994 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 486 aaccagccaatcttgatttcaggtacaca 514 ||||||||||||||||||| || |||||| Sbjct: 104789 aaccagccaatcttgattttagatacaca 104817
>gb|AC156796.2| Mus musculus BAC clone RP24-90N20 from chromosome 9, complete sequence Length = 204185 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 gcatgcttgcttctcttattt 291 ||||||||||||||||||||| Sbjct: 29394 gcatgcttgcttctcttattt 29414
>gb|AC154221.3| Mus musculus BAC clone RP24-373L7 from chromosome 13, complete sequence Length = 157332 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 tacagctcgctctgagcaag 548 |||||||||||||||||||| Sbjct: 1866 tacagctcgctctgagcaag 1847
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 tctcttatttcaattcagga 301 |||||||||||||||||||| Sbjct: 1899654 tctcttatttcaattcagga 1899673
>gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) gene, complete cds Length = 87633 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aaacaaatcaatgcacactt 129 |||||||||||||||||||| Sbjct: 48463 aaacaaatcaatgcacactt 48444
>emb|Z83244.1|CEW06F12 Caenorhabditis elegans Cosmid W06F12, complete sequence Length = 29520 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tacatggctgaaaaaacaaa 116 |||||||||||||||||||| Sbjct: 13448 tacatggctgaaaaaacaaa 13467
>ref|XM_759885.1| Theileria parva strain Muguga hypothetical protein (TP02_0412) partial mRNA Length = 1923 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 tcatcctcatccaaattagt 480 |||||||||||||||||||| Sbjct: 1070 tcatcctcatccaaattagt 1051
>gb|AC146674.3| Callithrix jacchus clone CH259-338M13, complete sequence Length = 228448 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 tctcttatttcaattcagga 301 |||||||||||||||||||| Sbjct: 175699 tctcttatttcaattcagga 175718
>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence Length = 210140 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tgtgcaataaaactgtttgc 150 |||||||||||||||||||| Sbjct: 125079 tgtgcaataaaactgtttgc 125098
>gb|AC098976.2| Homo sapiens BAC clone RP11-751L19 from 4, complete sequence Length = 165221 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 atcatcatagtgaacataca 87 |||||||||||||||||||| Sbjct: 109464 atcatcatagtgaacataca 109483
>dbj|AK162653.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830144B01 product:unclassifiable, full insert sequence Length = 4247 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 tacagctcgctctgagcaag 548 |||||||||||||||||||| Sbjct: 3431 tacagctcgctctgagcaag 3412
>gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence Length = 153198 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tttcaattcaggagcatata 308 |||||||||||||||||||| Sbjct: 19818 tttcaattcaggagcatata 19799
>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence Length = 169812 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aaacaaatcaatgcacactt 129 |||||||||||||||||||| Sbjct: 144880 aaacaaatcaatgcacactt 144899
>dbj|AK041884.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630043P06 product:unclassifiable, full insert sequence Length = 2345 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 tacagctcgctctgagcaag 548 |||||||||||||||||||| Sbjct: 105 tacagctcgctctgagcaag 86
>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence Length = 122770 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 atctagcaataattgaatct 266 |||||||||||||||||||| Sbjct: 57789 atctagcaataattgaatct 57808
>gb|AC026116.26| Homo sapiens 12 BAC RP11-1022B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177267 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 aatagagaacgtgttttgaa 235 |||||||||||||||||||| Sbjct: 135726 aatagagaacgtgttttgaa 135745
>dbj|AK174776.1| Ciona intestinalis cDNA, clone:cilv016i18, full insert sequence Length = 984 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tgatttcaggtacacaacaa 518 |||||||||||||||||||| Sbjct: 366 tgatttcaggtacacaacaa 347
>dbj|BS000200.1| Pan troglodytes chromosome 22 clone:PTB-035B21, map 22, partial sequences, complete sequence Length = 31919 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 acagccatgcagcattttct 392 |||||||||||||||||||| Sbjct: 17315 acagccatgcagcattttct 17334
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 caaactgccatcggccaaca 455 |||||||||||||||||||| Sbjct: 152440 caaactgccatcggccaaca 152421 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,371,643 Number of Sequences: 3902068 Number of extensions: 6371643 Number of successful extensions: 177244 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176994 Number of HSP's gapped (non-prelim): 250 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)