| Clone Name | rbags17h19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009349.1| Triticum aestivum clone wlm96.pk0007.e4:fis, full insert mRNA sequence Length = 2006 Score = 706 bits (356), Expect = 0.0 Identities = 490/534 (91%), Gaps = 13/534 (2%) Strand = Plus / Minus Query: 50 tgaagaaattattggtgtgcgtggtctggtctggagacccagccagtaaaaattacatgc 109 ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1928 tgaagaaattattcgtgtacgtggtctggtctggagacccagacagtaaaaattacatgc 1869 Query: 110 aggtaaacagcagtagagtagtacagtatgtcccaaggggccaaaataggattaatcaat 169 | ||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| | Sbjct: 1868 aagtaaacagcagtagagtagga--gtatgtcccaaggggccaatataggattaatcagt 1811 Query: 170 aatacttttatatcctagtgcctttggcggcagctggaaacaacctgatggcactggttt 229 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct: 1810 aatacttctatatcctagtgcctttggcggcagctggaaataacctgatggcaatagttc 1751 Query: 230 cttgcttgcttcacttgcc----------aggtctaaattcagcttataggcgccgaaat 279 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 1750 cttgcttgcttcacttgcccgcccctgccaggtctaaattcagcatataggcgccgaaat 1691 Query: 280 gagcacacaacagctccgcatgtctacatactccacaactttgatccgctggagaaagcg 339 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1690 aagcacacaacagctccgcatgtctacatactccacgactttgatccgctggagaaagct 1631 Query: 340 tactatttacatctctttagagtggtacaacatacattccccgggcacgt-tggtatcag 398 | |||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||| Sbjct: 1630 tgctatttacatctctttagagtgatacaacatacattcctcgggcacatctggtatcaa 1571 Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1570 aagactctcagctgagctagaaaggcggcacatagatcaagaaagaggagatgcggcccg 1511 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaagttcg 518 || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1510 ctcgccctttgcaaatccagaaggtatttctcatctcttgttttgtaaagctgaagttcg 1451 Query: 519 aacttaattagatttaacttgtcacccacgtcatcggtttcaataggctctgca 572 |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 1450 aacttaattaaatttaacttgtcacccaggtcgtcggtttcaataggctctgca 1397
>gb|AY675583.1| Zea mays putative serine/threonine-specific protein kinase (kin2) mRNA, partial cds Length = 849 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 438 agaaagaggagatgcggcccgctggccctttgcaaatccagaaggtatttctcgtccttt 497 ||||||||||| || ||||| ||| | ||||||||||| || |||||||||||||| || Sbjct: 458 agaaagaggagctgtggcccactgactctttgcaaatcgaggaggtatttctcgtctctt 399 Query: 498 gttttgtaaagctgaagttcgaacttaatta 528 |||||||| ||||||| ||| |||||||||| Sbjct: 398 gttttgtacagctgaatttcaaacttaatta 368
>gb|AY112593.1| Zea mays CL3200_1 mRNA sequence Length = 1019 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 438 agaaagaggagatgcggcccgctggccctttgcaaatccagaaggtatttctcgtccttt 497 ||||||||||| || ||||| ||| | ||||||||||| || |||||||||||||| || Sbjct: 348 agaaagaggagctgtggcccactgactctttgcaaatcgaggaggtatttctcgtctctt 407 Query: 498 gttttgtaaagctgaagttcgaacttaatta 528 |||||||| ||||||| ||| |||||||||| Sbjct: 408 gttttgtacagctgaatttcaaacttaatta 438
>ref|XM_475738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1518 Score = 69.9 bits (35), Expect = 9e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 1514 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1455 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 513 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||||| Sbjct: 1454 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1400
>dbj|AK104868.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A03, full insert sequence Length = 1203 Score = 69.9 bits (35), Expect = 9e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 847 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 788 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 513 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||||| Sbjct: 787 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 733
>dbj|AK067158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M16, full insert sequence Length = 2073 Score = 69.9 bits (35), Expect = 9e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 1703 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1644 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 513 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||||| Sbjct: 1643 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1589
>dbj|D82039.1| Oryza sativa mRNA for OSK1, complete cds Length = 2209 Score = 69.9 bits (35), Expect = 9e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 1697 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1638 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 513 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||||| Sbjct: 1637 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1583
>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09, complete sequence Length = 94399 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 58069 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 58128 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 511 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||| Sbjct: 58129 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 58181
>dbj|AB101655.1| Oryza sativa (japonica cultivar-group) OSK1 gene for SnRK1a protein kinase, complete cds Length = 6112 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 5529 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 5470 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 511 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||| Sbjct: 5469 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 5417
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 26140729 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 26140788 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 511 ||| |||||||||| || ||||||||||| || ||| |||||||||||||||| Sbjct: 26140789 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 26140841
>gb|BT018428.1| Zea mays clone EL01N0363F09.d mRNA sequence Length = 1948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 402 actctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccgctg 461 ||||||||||| | ||| ||||||| ||| | || |||||||| ||||| | || ||| Sbjct: 352 actctcagctgagttagaaaggcggaacacaagtccagaaagagaagatgtgatccactg 411 Query: 462 gccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 513 ||||||||| || |||||||| ||||| ||| | |||||||||||||||| Sbjct: 412 accctttgcaggtcaagaaggtacttctcatccctcgttttgtaaagctgaa 463
>gb|AF062479.1|AF062479 Oryza sativa protein kinase SNF1 (Snf1) mRNA, complete cds Length = 2100 Score = 54.0 bits (27), Expect = 5e-04 Identities = 93/115 (80%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | || || || |||||||| || || || || Sbjct: 1672 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1613 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 513 ||| ||||||||| || |||| |||||| || ||| |||||||||||||||||| Sbjct: 1612 ctgagcctttgcaagtcaagaaagtatttttcatcccttgttttgtaaagctgaa 1558
>emb|X82548.1|HVBKIN2 H.vulgare mRNA for SNF1-related protein kinase Length = 1453 Score = 50.1 bits (25), Expect = 0.008 Identities = 100/125 (80%) Strand = Plus / Minus Query: 399 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 458 |||||||||||||| | ||| ||||| | ||| || || ||||||||||| || || || Sbjct: 1452 aggactctcagctgggttagaaaggcagaacacaggtccagaaagaggagctgtggtcca 1393 Query: 459 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaagttcg 518 || |||||||||| || ||||| || || || || |||||||||| ||||||| ||| Sbjct: 1392 ctaaccctttgcaagtcgagaagatacttatcaccccttgttttgtacagctgaatttca 1333 Query: 519 aactt 523 ||||| Sbjct: 1332 aactt 1328
>gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, complete sequence Length = 195771 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 555 gtttcaataggctctgcaata 575 ||||||||||||||||||||| Sbjct: 141225 gtttcaataggctctgcaata 141205
>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence Length = 197373 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 gtttcaataggctctgcaata 575 ||||||||||||||||||||| Sbjct: 183266 gtttcaataggctctgcaata 183286
>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence Length = 158596 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 458 gctggccctttgcaaatccagaagg 482 |||||||||||||||||| |||||| Sbjct: 16469 gctggccctttgcaaatcaagaagg 16445
>gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome 16, complete sequence Length = 159556 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 ctatttacatctctttagagt 362 ||||||||||||||||||||| Sbjct: 151142 ctatttacatctctttagagt 151162
>gb|AC151761.1| Ornithorhynchus anatinus chromosome UNK clone OABb-434P24, complete sequence Length = 134595 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 aatgagcacacaacagctccgcat 300 |||||||| ||||||||||||||| Sbjct: 65169 aatgagcagacaacagctccgcat 65192
>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence Length = 192643 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 attaatcaataatactttta 179 |||||||||||||||||||| Sbjct: 88475 attaatcaataatactttta 88456
>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence Length = 219617 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 attaatcaataatactttta 179 |||||||||||||||||||| Sbjct: 47050 attaatcaataatactttta 47031
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 aaaataggattaatcaataa 171 |||||||||||||||||||| Sbjct: 20662751 aaaataggattaatcaataa 20662732
>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence Length = 152417 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 aaaataggattaatcaataa 171 |||||||||||||||||||| Sbjct: 76508 aaaataggattaatcaataa 76489
>gb|AY830085.1| Flavobacterium sp. 4214 beta-galactosidase precursor, gene, complete cds Length = 3141 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 aattacatgcaggtaaacag 119 |||||||||||||||||||| Sbjct: 2443 aattacatgcaggtaaacag 2462
>emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chromosome 11 Contains the 5' end of the Grb10 gene for growth factor receptor bound protein 10, a nucleosome assembly protein 1-like 1 (Nap1l1) pseudogene and three CpG islands, complete sequence Length = 174389 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 acttttatatcctagtgcctttgg 196 |||||||||| ||||||||||||| Sbjct: 158314 acttttatattctagtgcctttgg 158291
>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence Length = 150889 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gcacatagatcaagaaagag 445 |||||||||||||||||||| Sbjct: 19620 gcacatagatcaagaaagag 19639
>dbj|AK046759.1| Mus musculus 4 days neonate thymus cDNA, RIKEN full-length enriched library, clone:B630013F22 product:FYN binding protein, full insert sequence Length = 2397 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 attaatcaataatactttta 179 |||||||||||||||||||| Sbjct: 417 attaatcaataatactttta 436
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 aaaataggattaatcaataa 171 |||||||||||||||||||| Sbjct: 20655780 aaaataggattaatcaataa 20655761
>gb|AE000783.1| Borrelia burgdorferi B31, complete genome Length = 910724 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 caataatacttttatatcct 185 |||||||||||||||||||| Sbjct: 140115 caataatacttttatatcct 140134
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tggagaaagcgtactattta 348 |||||||||||||||||||| Sbjct: 1275497 tggagaaagcgtactattta 1275516
>dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, map 22, complete sequences Length = 214189 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttaattagatttaacttgtc 541 |||||||||||||||||||| Sbjct: 61658 ttaattagatttaacttgtc 61677
>dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, map 22, complete sequences Length = 183533 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ttaattagatttaacttgtc 541 |||||||||||||||||||| Sbjct: 167503 ttaattagatttaacttgtc 167522
>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence Length = 212270 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ggattaatcaataatacttt 177 |||||||||||||||||||| Sbjct: 132060 ggattaatcaataatacttt 132079
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 attaatcaataatactttta 179 |||||||||||||||||||| Sbjct: 5030177 attaatcaataatactttta 5030158
>emb|Z81557.1|CEF59A1 Caenorhabditis elegans Cosmid F59A1, complete sequence Length = 39236 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaccttgcaactgaagaaat 58 |||||||||||||||||||| Sbjct: 23938 aaccttgcaactgaagaaat 23919 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,035,729 Number of Sequences: 3902068 Number of extensions: 5035729 Number of successful extensions: 97199 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97043 Number of HSP's gapped (non-prelim): 153 length of query: 575 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 552 effective length of database: 17,143,297,704 effective search space: 9463100332608 effective search space used: 9463100332608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)