Clone Information

BLAST Search Result

Clone Name	rbags17h16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_192655.1\| Oryza sativa (japonica cultivar-group), predic...	196	6e-47
2	dbj\|AK068031.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	137	5e-29
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
4	dbj\|AP003330.4\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
5	dbj\|AP003022.2\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
6	gb\|AC136216.2\| Oryza sativa (japonica cultivar-group) chromosome...	125	2e-25
7	gb\|AC105260.2\| Oryza sativa (japonica cultivar-group) chromosome...	125	2e-25
8	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
9	gb\|AY110671.1\| Zea mays CL2748_1 mRNA sequence	117	4e-23
10	gb\|AY111433.1\| Zea mays CL2748_2 mRNA sequence	96	2e-16
11	gb\|BT013811.1\| Lycopersicon esculentum clone 132732F, mRNA sequence	52	0.002
12	ref\|XM_001005710.1\| PREDICTED: Mus musculus hypothetical protein...	46	0.14
13	ref\|XM_980174.1\| PREDICTED: Mus musculus hypothetical protein LO...	46	0.14
14	ref\|XM_978792.1\| PREDICTED: Mus musculus hypothetical protein LO...	46	0.14
15	emb\|BX548253.31\| Mouse DNA sequence from clone RP23-382I12 on ch...	46	0.14
16	emb\|AL824709.35\| Mouse DNA sequence from clone RP23-388P16 on ch...	46	0.14
17	gb\|AC090655.63\| Mus musculus strain C57BL/6J clone rp23-382i12 m...	46	0.14
18	emb\|AL807796.16\| Mouse DNA sequence from clone RP23-167I12 on ch...	46	0.14
19	ref\|XM_383883.1\| Gibberella zeae PH-1 chromosome 2 hypothetical ...	44	0.54
20	emb\|AL645965.8\| Mouse DNA sequence from clone RP23-65I14 on chro...	44	0.54
21	emb\|AL954136.13\| Zebrafish DNA sequence from clone CH211-220E11,...	44	0.54
22	gb\|AC003684.1\| Homo sapiens X BAC GS1-519E5 (Genome Systems Huma...	42	2.1
23	gb\|AC092221.1\|AC092221 Drosophila melanogaster, chromosome 2L, r...	42	2.1
24	gb\|AC092188.1\|AC092188 Drosophila melanogaster, chromosome 2L, r...	42	2.1
25	emb\|BX005282.24\| Zebrafish DNA sequence from clone DKEY-37M22 in...	42	2.1
26	gb\|AE003586.3\| Drosophila melanogaster chromosome 2L, section 5 ...	42	2.1
27	gb\|AC004440.1\|AC004440 Drosophila melanogaster (P1 DS04892 (D66)...	42	2.1
28	ref\|XM_631221.1\| Dictyostelium discoideum hypothetical protein (...	40	8.4
29	gb\|AF110520.1\|MMHC425O18 Mus musculus major histocompatibility c...	40	8.4
30	gb\|AC121906.3\| Mus musculus BAC clone RP24-176E21 from chromosom...	40	8.4
31	gb\|AC136518.3\| Mus musculus BAC clone RP23-304K22 from chromosom...	40	8.4
32	gb\|AC115948.12\| Mus musculus chromosome 16, clone RP24-568J12, c...	40	8.4
33	emb\|CR974462.5\| Mouse DNA sequence from clone RP23-222K15 on chr...	40	8.4
34	gb\|AC120052.2\| Homo sapiens chromosome 8, clone CTD-2232O19, com...	40	8.4
35	emb\|AL355987.31\| Human DNA sequence from clone RP11-216L13 on ch...	40	8.4
36	gb\|AC144400.2\| Lemur catta clone LBNL2-87E20, complete sequence	40	8.4
37	gb\|AC073553.5\| Mus musculus strain C57BL/6J chromosome 12 clone ...	40	8.4
38	gb\|AC161231.7\| Mus musculus chromosome 5, clone RP24-241P24, com...	40	8.4
39	gb\|AC165086.4\| Mus musculus BAC clone RP23-209B2 from chromosome...	40	8.4
40	dbj\|AP007155.1\| Aspergillus oryzae RIB40 genomic DNA, SC003	40	8.4
41	gb\|AC155709.5\| Mus musculus 10 BAC RP24-200F4 (Roswell Park Canc...	40	8.4
42	gb\|AY171569.1\|AY171569S1 Petromyzon marinus ABCB9-like TAP-famil...	40	8.4
43	gb\|AC158636.5\| Mus musculus 10 BAC RP23-402A24 (Roswell Park Can...	40	8.4
44	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
45	emb\|AL662961.3\|OSJN00164 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
46	dbj\|AP008246.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
47	gb\|AC092839.4\| Homo sapiens BAC clone RP11-257N16 from 2, comple...	40	8.4
48	gb\|AC105186.14\| Homo sapiens chromosome 8, clone CTD-2323A1, com...	40	8.4
49	gb\|AC134985.11\| Mus musculus chromosome 5, clone RP24-432L3, com...	40	8.4
50	emb\|CT030142.10\| Mouse DNA sequence from clone RP23-422H22 on ch...	40	8.4
51	gb\|AF100956.1\|AF100956 Mus musculus major histocompatibility loc...	40	8.4
52	emb\|BX004822.12\| Zebrafish DNA sequence from clone DKEY-18F18, c...	40	8.4
53	gb\|AC152412.2\| Mus musculus BAC clone RP23-383B18 from 7, comple...	40	8.4
54	gb\|AC002070.1\|HSAC002070 Human BAC clone 7E17 from 12q, complete...	40	8.4
55	gb\|AC165349.2\| Mus musculus BAC clone RP23-212M22 from chromosom...	40	8.4
56	gb\|AC169384.2\| Mus musculus chromosome 5, clone RP23-231C16, com...	40	8.4
57	gb\|M76762.1\|MUSKE3A Mus musculus ribosomal protein (Ke-3) gene, ...	40	8.4

>ref|NM_192655.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2247

 Score =  196 bits (99), Expect = 6e-47
 Identities = 180/207 (86%)
 Strand = Plus / Minus

                                                                        
Query: 396  cattcgccagctcctgctcgcagaatcgctacttggggccgaaacggagacggagtcaac 455
            ||||||||||||||||||| ||||||| ||||||||||| ||||| ||| | || || ||
Sbjct: 2109 cattcgccagctcctgctcccagaatcactacttggggctgaaacagagccagaatcgac 2050

                                                                        
Query: 456  aaccatgtcaccctcaagcaagcgaagaacatgagacatgcgaggccttgaatgagggtc 515
            ||||||||| ||||| || | ||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 2049 aaccatgtcgccctctagtatgcgtagaacatgagacatgcggggccttgaatgaggatc 1990

                                                                        
Query: 516  acgtcgtatgcacaggtttgcggcatgcaacatgcaacggacctcattttcgctgtaccg 575
            |||||||||||| || ||||| |||||||||||||||  |||||||||||| |  || ||
Sbjct: 1989 acgtcgtatgcaaagttttgctgcatgcaacatgcaatagacctcattttcacaatagcg 1930

                                       
Query: 576  gtcccccaagcatgggtctatgagctc 602
            ||| ||||||| ||| |||||||||||
Sbjct: 1929 gtcacccaagcgtggatctatgagctc 1903

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>dbj|AK068031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130D08, full
            insert sequence
          Length = 3654

 Score =  137 bits (69), Expect = 5e-29
 Identities = 111/125 (88%)
 Strand = Plus / Minus

                                                                        
Query: 457  accatgtcaccctcaagcaagcgaagaacatgagacatgcgaggccttgaatgagggtca 516
            |||||||| ||||| || | ||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 3180 accatgtcgccctccagtatgcgtagaacatgggacatgcgaggcctcgaatgagggtca 3121

                                                                        
Query: 517  cgtcgtatgcacaggtttgcggcatgcaacatgcaacggacctcattttcgctgtaccgg 576
            || ||||||||||||||||| ||||||| ||||||  ||||||||||||| ||| |||||
Sbjct: 3120 cgccgtatgcacaggtttgctgcatgcagcatgcacaggacctcattttcactgaaccgg 3061

                 
Query: 577  tcccc 581
            |||||
Sbjct: 3060 tcccc 3056

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                            
Query: 483      aacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcggcatg 542
                ||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |||||
Sbjct: 23728516 aacatgagacatgcggggccttgaatgaggatcacgtcgtatgcaaagttttgctgcatg 23728457

                                                                            
Query: 543      caacatgcaacggacctcattttcgctgtaccggtcccccaagcatgggtctatgagctc 602
                ||||||||||  |||||||||||| |  || ||||| ||||||| ||| |||||||||||
Sbjct: 23728456 caacatgcaatagacctcattttcacaatagcggtcacccaagcgtggatctatgagctc 23728397



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 396      cattcgccagctcctgctcgcagaatcgctacttggggccgaaacggagacggagtcaac 455
                ||||||||||||||||||| ||||||| ||||||||||| ||||| ||| | || || ||
Sbjct: 23728700 cattcgccagctcctgctcccagaatcactacttggggctgaaacagagccagaatcgac 23728641

                               
Query: 456      aaccatgtcaccctc 470
                ||||||||| |||||
Sbjct: 23728640 aaccatgtcgccctc 23728626



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 83       agctaactcagagctcaatatacttgtaaacctattgacattcctactatacaccagg 140
                |||||||| |||||||||||||||||||||||||||  || | |||||||||||||||
Sbjct: 23729037 agctaactgagagctcaatatacttgtaaacctattagcacttctactatacaccagg 23728980

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>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F01
          Length = 163671

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                          
Query: 483    aacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcggcatg 542
              ||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |||||
Sbjct: 106220 aacatgagacatgcggggccttgaatgaggatcacgtcgtatgcaaagttttgctgcatg 106161

                                                                          
Query: 543    caacatgcaacggacctcattttcgctgtaccggtcccccaagcatgggtctatgagctc 602
              ||||||||||  |||||||||||| |  || ||||| ||||||| ||| |||||||||||
Sbjct: 106160 caacatgcaatagacctcattttcacaatagcggtcacccaagcgtggatctatgagctc 106101



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                          
Query: 396    cattcgccagctcctgctcgcagaatcgctacttggggccgaaacggagacggagtcaac 455
              ||||||||||||||||||| ||||||| ||||||||||| ||||| ||| | || || ||
Sbjct: 106404 cattcgccagctcctgctcccagaatcactacttggggctgaaacagagccagaatcgac 106345

                             
Query: 456    aaccatgtcaccctc 470
              ||||||||| |||||
Sbjct: 106344 aaccatgtcgccctc 106330



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                        
Query: 83     agctaactcagagctcaatatacttgtaaacctattgacattcctactatacaccagg 140
              |||||||| |||||||||||||||||||||||||||  || | |||||||||||||||
Sbjct: 106741 agctaactgagagctcaatatacttgtaaacctattagcacttctactatacaccagg 106684

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>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0681B11
          Length = 144091

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                        
Query: 483  aacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcggcatg 542
            ||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |||||
Sbjct: 9101 aacatgagacatgcggggccttgaatgaggatcacgtcgtatgcaaagttttgctgcatg 9042

                                                                        
Query: 543  caacatgcaacggacctcattttcgctgtaccggtcccccaagcatgggtctatgagctc 602
            ||||||||||  |||||||||||| |  || ||||| ||||||| ||| |||||||||||
Sbjct: 9041 caacatgcaatagacctcattttcacaatagcggtcacccaagcgtggatctatgagctc 8982



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 396  cattcgccagctcctgctcgcagaatcgctacttggggccgaaacggagacggagtcaac 455
            ||||||||||||||||||| ||||||| ||||||||||| ||||| ||| | || || ||
Sbjct: 9285 cattcgccagctcctgctcccagaatcactacttggggctgaaacagagccagaatcgac 9226

                           
Query: 456  aaccatgtcaccctc 470
            ||||||||| |||||
Sbjct: 9225 aaccatgtcgccctc 9211



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 83   agctaactcagagctcaatatacttgtaaacctattgacattcctactatacaccagg 140
            |||||||| |||||||||||||||||||||||||||  || | |||||||||||||||
Sbjct: 9622 agctaactgagagctcaatatacttgtaaacctattagcacttctactatacaccagg 9565

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>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0022J22, complete sequence
          Length = 142854

 Score =  125 bits (63), Expect = 2e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                         
Query: 483   aacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcggcatg 542
             |||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 23666 aacatgggacatgcgaggcctcgaatgagggtcacgccgtatgcacaggtttgctgcatg 23725

                                                    
Query: 543   caacatgcaacggacctcattttcgctgtaccggtcccc 581
             || ||||||  ||||||||||||| ||| ||||||||||
Sbjct: 23726 cagcatgcacaggacctcattttcactgaaccggtcccc 23764

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>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04,
             complete sequence
          Length = 100800

 Score =  125 bits (63), Expect = 2e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                         
Query: 483   aacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcggcatg 542
             |||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 66431 aacatgggacatgcgaggcctcgaatgagggtcacgccgtatgcacaggtttgctgcatg 66490

                                                    
Query: 543   caacatgcaacggacctcattttcgctgtaccggtcccc 581
             || ||||||  ||||||||||||| ||| ||||||||||
Sbjct: 66491 cagcatgcacaggacctcattttcactgaaccggtcccc 66529

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  125 bits (63), Expect = 2e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                            
Query: 483      aacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcggcatg 542
                |||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 29140207 aacatgggacatgcgaggcctcgaatgagggtcacgccgtatgcacaggtttgctgcatg 29140266

                                                       
Query: 543      caacatgcaacggacctcattttcgctgtaccggtcccc 581
                || ||||||  ||||||||||||| ||| ||||||||||
Sbjct: 29140267 cagcatgcacaggacctcattttcactgaaccggtcccc 29140305

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>gb|AY110671.1| Zea mays CL2748_1 mRNA sequence
          Length = 691

 Score =  117 bits (59), Expect = 4e-23
 Identities = 98/111 (88%)
 Strand = Plus / Plus

                                                                       
Query: 457 accatgtcaccctcaagcaagcgaagaacatgagacatgcgaggccttgaatgagggtca 516
           |||||||| |||||||| | |||||||||||| |||||||||||||||||||| ||||| 
Sbjct: 449 accatgtcgccctcaagaatgcgaagaacatgggacatgcgaggccttgaatgtgggtcg 508

                                                              
Query: 517 cgtcgtatgcacaggtttgcggcatgcaacatgcaacggacctcattttcg 567
           |||| ||| ||||||||||| || |||| ||||||  ||||||||||||||
Sbjct: 509 cgtcttatacacaggtttgccgcgtgcagcatgcaggggacctcattttcg 559



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 248 agcactaatatcggttagagatgctcttcttgtctcggtcc 288
           |||||||||||| ||| ||||| |||| |||||| ||||||
Sbjct: 258 agcactaatatctgttggagatactctgcttgtcccggtcc 298

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>gb|AY111433.1| Zea mays CL2748_2 mRNA sequence
          Length = 509

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                       
Query: 457 accatgtcaccctcaagcaagcgaagaacatgagacatgcgaggccttgaatgagggtca 516
           ||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||| 
Sbjct: 412 accatgtcaccctcaagaatgcgaagaacatgggacatgcgaggccttgaatgtgggtcg 471

                               
Query: 517 cgtcgtatgcacaggtttgc 536
            ||| |||||||| ||||||
Sbjct: 472 ggtcttatgcacaagtttgc 491



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 249 gcactaatatcggttagagatgctcttcttgtctcggtccca 290
           ||||||||||| ||| ||||| |||| |||||||||| ||||
Sbjct: 207 gcactaatatctgttggagatactctgcttgtctcggcccca 248

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>gb|BT013811.1| Lycopersicon esculentum clone 132732F, mRNA sequence
          Length = 2610

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 478  cgaagaacatgagacatgcgaggccttgaatgagggtcacgtcgtatgcacaggtttgcg 537
            ||||| || ||||||||||||||||| |  ||||| ||||| ||||||||||    ||| 
Sbjct: 2207 cgaagtacttgagacatgcgaggcctggcctgaggatcacgccgtatgcacaaagatgca 2148

                          
Query: 538  gcatgcaacatgca 551
            ||||||||||||||
Sbjct: 2147 gcatgcaacatgca 2134

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>ref|XM_001005710.1| PREDICTED: Mus musculus hypothetical protein LOC673493 (LOC673493),
           mRNA
          Length = 537

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 186 agagggggaggggagcaagggcg 208
           |||||||||||||||||||||||
Sbjct: 234 agagggggaggggagcaagggcg 256

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>ref|XM_980174.1| PREDICTED: Mus musculus hypothetical protein LOC665898 (LOC665898),
           mRNA
          Length = 1234

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 186 agagggggaggggagcaagggcg 208
           |||||||||||||||||||||||
Sbjct: 234 agagggggaggggagcaagggcg 256

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>ref|XM_978792.1| PREDICTED: Mus musculus hypothetical protein LOC665701 (LOC665701),
           mRNA
          Length = 537

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 186 agagggggaggggagcaagggcg 208
           |||||||||||||||||||||||
Sbjct: 234 agagggggaggggagcaagggcg 256

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>emb|BX548253.31| Mouse DNA sequence from clone RP23-382I12 on chromosome 4, complete
             sequence
          Length = 73646

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 186   agagggggaggggagcaagggcg 208
             |||||||||||||||||||||||
Sbjct: 27511 agagggggaggggagcaagggcg 27533

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>emb|AL824709.35| Mouse DNA sequence from clone RP23-388P16 on chromosome 4, complete
              sequence
          Length = 211610

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 186    agagggggaggggagcaagggcg 208
              |||||||||||||||||||||||
Sbjct: 144405 agagggggaggggagcaagggcg 144427

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>gb|AC090655.63| Mus musculus strain C57BL/6J clone rp23-382i12 map 4, complete sequence
          Length = 264975

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 186    agagggggaggggagcaagggcg 208
              |||||||||||||||||||||||
Sbjct: 179630 agagggggaggggagcaagggcg 179608

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>emb|AL807796.16| Mouse DNA sequence from clone RP23-167I12 on chromosome 4, complete
             sequence
          Length = 168268

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 186   agagggggaggggagcaagggcg 208
             |||||||||||||||||||||||
Sbjct: 52196 agagggggaggggagcaagggcg 52174

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>ref|XM_383883.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03707.1)
           partial mRNA
          Length = 1197

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 140 gacaaaggtagcagcaaaagct 161
           ||||||||||||||||||||||
Sbjct: 54  gacaaaggtagcagcaaaagct 33

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>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the
             5' end of the gene for a novel protein (330000P08Rik)
             (Luc7a), the gene for a novel protein (5530600A18Rik), the
             Abcc3 gene for ATP-binding cassette sub-family C
             (CFTR/MRP) member 3, the Cacna1g gene for calcium channel
             voltage-dependent T type alpha 1G subunit, the 3' end of
             the Tisp78 gene for transcript increased in spermiogenesis
             78 and one CpG island, complete sequence
          Length = 161978

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 187   gagggggaggggagcaagggcgagggaata 216
             |||||||||||||| ||||| |||||||||
Sbjct: 35709 gagggggaggggagaaagggggagggaata 35738

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>emb|AL954136.13| Zebrafish DNA sequence from clone CH211-220E11, complete sequence
          Length = 194869

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 40     atgtcatttcaggtcacatttg 61
              ||||||||||||||||||||||
Sbjct: 133532 atgtcatttcaggtcacatttg 133511

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>gb|AC003684.1| Homo sapiens X BAC GS1-519E5 (Genome Systems Human BAC library) complete
              sequence
          Length = 210954

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    aaaagcagagggggaggggag 200
              |||||||||||||||||||||
Sbjct: 149626 aaaagcagagggggaggggag 149606



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    aaaagcagagggggaggggag 200
              |||||||||||||||||||||
Sbjct: 149507 aaaagcagagggggaggggag 149487



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    aaaagcagagggggaggggag 200
              |||||||||||||||||||||
Sbjct: 149470 aaaagcagagggggaggggag 149450

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>gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, region 22A-22C, BAC clone
              BACR16D07, complete sequence
          Length = 170868

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     catttgtcggctgatacacaaaaga 80
              ||||||||||||||| |||||||||
Sbjct: 167696 catttgtcggctgattcacaaaaga 167720

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>gb|AC092188.1|AC092188 Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone
              BACR28O09, complete sequence
          Length = 177326

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 56     catttgtcggctgatacacaaaaga 80
              ||||||||||||||| |||||||||
Sbjct: 170154 catttgtcggctgattcacaaaaga 170130

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>emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in linkage group 11,
             complete sequence
          Length = 153270

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 259   cggttagagatgctcttcttg 279
             |||||||||||||||||||||
Sbjct: 23278 cggttagagatgctcttcttg 23298

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>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
              sequence
          Length = 306696

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     catttgtcggctgatacacaaaaga 80
              ||||||||||||||| |||||||||
Sbjct: 240567 catttgtcggctgattcacaaaaga 240591

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>gb|AC004440.1|AC004440 Drosophila melanogaster (P1 DS04892 (D66)) DNA sequence, complete
             sequence
          Length = 62400

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 56    catttgtcggctgatacacaaaaga 80
             ||||||||||||||| |||||||||
Sbjct: 33438 catttgtcggctgattcacaaaaga 33414

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>ref|XM_631221.1| Dictyostelium discoideum hypothetical protein (DDB0219422), partial
            mRNA
          Length = 2966

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  ataatgctgctgatcattta 394
            ||||||||||||||||||||
Sbjct: 1864 ataatgctgctgatcattta 1883

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>gb|AF110520.1|MMHC425O18 Mus musculus major histocompatibility complex region NG27, NG28, RPS28,
              NADH oxidoreductase, NG29, KIFC1, Fas-binding protein,
              BING1, tapasin, RalGDS-like, KE2, BING4, beta
              1,3-galactosyl transferase, and RPS18 genes, complete cds;
              Sacm21 gene, partial cds; and unknown gene
          Length = 213245

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    attactcaaaagcagagggg 192
              ||||||||||||||||||||
Sbjct: 201728 attactcaaaagcagagggg 201747

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>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence
          Length = 171059

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aaagcagagggggaggggag 200
             ||||||||||||||||||||
Sbjct: 32010 aaagcagagggggaggggag 32029

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>gb|AC136518.3| Mus musculus BAC clone RP23-304K22 from chromosome 16, complete sequence
          Length = 206486

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    aaagcagagggggaggggag 200
              ||||||||||||||||||||
Sbjct: 177988 aaagcagagggggaggggag 178007

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>gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, complete sequence
          Length = 212604

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aaagcagagggggaggggag 200
             ||||||||||||||||||||
Sbjct: 45498 aaagcagagggggaggggag 45517

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>emb|CR974462.5| Mouse DNA sequence from clone RP23-222K15 on chromosome 17, complete
             sequence
          Length = 228057

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   attactcaaaagcagagggg 192
             ||||||||||||||||||||
Sbjct: 46137 attactcaaaagcagagggg 46156

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>gb|AC120052.2| Homo sapiens chromosome 8, clone CTD-2232O19, complete sequence
          Length = 108119

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   agagggggaggggagcaagg 205
             ||||||||||||||||||||
Sbjct: 14162 agagggggaggggagcaagg 14181

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>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the 3'
              end of the gene for a novel protein similar to mouse
              pancreatitis-induced protein 49  (PIP49), the 5' end of a
              novel gene (FLJ30346), five novel genes  (containing
              LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985,
              FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL)
              pseudogene, the gene for a novel protein similar to mouse
              lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting
              ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the
              gene for phosphohistidine phosphatase (PHP14), the gene for
              a novel protein similar to rat apical early endosomal
              glycoprotein (LOC252882), the EDF1 gene for endothelial
              differentiation-related factor 1 (MBF1, EDF-1), the 5' end
              of the TRAF2 gene for TNF receptor-associated factor 2
              (TRAP, TRAP3) and ten CpG islands, complete sequence
          Length = 182003

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     ctgatacacaaaagaagagc 85
              ||||||||||||||||||||
Sbjct: 153852 ctgatacacaaaagaagagc 153871

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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  agcagagggggaggggagca 202
            ||||||||||||||||||||
Sbjct: 9778 agcagagggggaggggagca 9759

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>gb|AC073553.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-270B12, complete
              sequence
          Length = 187523

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 182    aagcagagggggaggggagcaagggcgaggga 213
              ||||||||||||||||||| ||||| ||||||
Sbjct: 144527 aagcagagggggaggggag-aagggagaggga 144557

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>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence
          Length = 193682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   agggggaggggagcaagggc 207
             ||||||||||||||||||||
Sbjct: 95198 agggggaggggagcaagggc 95179

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>gb|AC165086.4| Mus musculus BAC clone RP23-209B2 from chromosome 7, complete sequence
          Length = 195905

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    aaagcagagggggaggggag 200
              ||||||||||||||||||||
Sbjct: 140369 aaagcagagggggaggggag 140350

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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    ggttgttgtttccttccagc 332
              ||||||||||||||||||||
Sbjct: 313120 ggttgttgtttccttccagc 313139

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>gb|AC155709.5| Mus musculus 10 BAC RP24-200F4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176109

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aaagcagagggggaggggag 200
             ||||||||||||||||||||
Sbjct: 66842 aaagcagagggggaggggag 66861

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>gb|AY171569.1|AY171569S1 Petromyzon marinus ABCB9-like TAP-family protein (ABCB9) gene, exons
            1, 2a, and 2b
          Length = 3969

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   gctaactcagagctcaatat 103
            ||||||||||||||||||||
Sbjct: 3548 gctaactcagagctcaatat 3567

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>gb|AC158636.5| Mus musculus 10 BAC RP23-402A24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191887

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    aaagcagagggggaggggag 200
              ||||||||||||||||||||
Sbjct: 135497 aaagcagagggggaggggag 135516

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 537     ggcatgcaacatgcaacgga 556
               ||||||||||||||||||||
Sbjct: 8722397 ggcatgcaacatgcaacgga 8722378

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>emb|AL662961.3|OSJN00164 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028M15,
             complete sequence
          Length = 187330

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   ggcatgcaacatgcaacgga 556
             ||||||||||||||||||||
Sbjct: 64936 ggcatgcaacatgcaacgga 64917

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>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1642C07
          Length = 206004

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   ttgccaagggaagaagagagcact 253
             |||||||||||||||| |||||||
Sbjct: 38965 ttgccaagggaagaagggagcact 38942

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>gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, complete sequence
          Length = 186464

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   tgttgtttccttccagccac 335
             ||||||||||||||||||||
Sbjct: 50761 tgttgtttccttccagccac 50742

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>gb|AC105186.14| Homo sapiens chromosome 8, clone CTD-2323A1, complete sequence
          Length = 114669

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   agagggggaggggagcaagg 205
             ||||||||||||||||||||
Sbjct: 14202 agagggggaggggagcaagg 14183

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>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence
          Length = 199782

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    agggggaggggagcaagggc 207
              ||||||||||||||||||||
Sbjct: 155777 agggggaggggagcaagggc 155758

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>emb|CT030142.10| Mouse DNA sequence from clone RP23-422H22 on chromosome 12, complete
             sequence
          Length = 203796

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   agcagcaaaagctttgggcctagg 172
             |||||| |||||||||||||||||
Sbjct: 50812 agcagccaaagctttgggcctagg 50835



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   agcagcaaaagctttgggcctagg 172
             |||||| |||||||||||||||||
Sbjct: 14954 agcagccaaagctttgggcctagg 14931

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>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region;
             Fas-binding protein Daxx (DAXX) gene, partial cds; Bing1
             (BING1), tapasin (tapasin), RalGDS-like factor (RLF), KE2
             (KE2), BING4 (BING4), beta1, 3-galactosyl transferase
             (beta1,3-galactosyl transferase), ribosomal protein
             subunit S18 (RPS18), Sacm21 (Sacm21), H2K1(b) (H2-K1(b)),
             RING1 (RING1), KE6a (KE6a), KE4 (KE4), RXRbeta (RXRbeta),
             collagen alpha-2 (XI) (COLA11A2), H2-O alpha (H2-Oalpha),
             RING3 (RING3), H2-M alpha (H2-M alpha), H2-M beta 2 (H2-M
             beta2), and H2-M beta1 (H2-M beta1) genes, complete cds;
             and LMP 2 gene, partial cds
          Length = 273800

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   attactcaaaagcagagggg 192
             ||||||||||||||||||||
Sbjct: 39443 attactcaaaagcagagggg 39462

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>emb|BX004822.12| Zebrafish DNA sequence from clone DKEY-18F18, complete sequence
          Length = 201902

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     tgtcatttcaggtcacattt 60
              ||||||||||||||||||||
Sbjct: 137697 tgtcatttcaggtcacattt 137678

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>gb|AC152412.2| Mus musculus BAC clone RP23-383B18 from 7, complete sequence
          Length = 196399

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   aaagcagagggggaggggag 200
             ||||||||||||||||||||
Sbjct: 33777 aaagcagagggggaggggag 33758

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>gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete sequence
          Length = 165197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    cattcctactatacaccaggacaa 144
              |||||||||||| |||||||||||
Sbjct: 130633 cattcctactatgcaccaggacaa 130656

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>gb|AC165349.2| Mus musculus BAC clone RP23-212M22 from chromosome 12, complete sequence
          Length = 199483

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 149    agcagcaaaagctttgggcctagg 172
              |||||| |||||||||||||||||
Sbjct: 186274 agcagccaaagctttgggcctagg 186297



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 149    agcagcaaaagctttgggcctagg 172
              |||||| |||||||||||||||||
Sbjct: 150408 agcagccaaagctttgggcctagg 150385

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>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   agggggaggggagcaagggc 207
             ||||||||||||||||||||
Sbjct: 16839 agggggaggggagcaagggc 16820

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>gb|M76762.1|MUSKE3A Mus musculus ribosomal protein (Ke-3) gene, exons 1 to 5, and
            complete cds
          Length = 3620

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  attactcaaaagcagagggg 192
            ||||||||||||||||||||
Sbjct: 2655 attactcaaaagcagagggg 2636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,952,797
Number of Sequences: 3902068
Number of extensions: 4952797
Number of successful extensions: 108107
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107863
Number of HSP's gapped (non-prelim): 244
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result