ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476701.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2254 Score = 234 bits (118), Expect = 3e-58 Identities = 250/294 (85%) Strand = Plus / Minus Query: 323 accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 382 ||||||||| |||||| | | |||||||| |||| |||||||||||| ||||| |||| Sbjct: 1866 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 1807 Query: 383 caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 442 || |||||||| |||| ||||||||||| || ||||| || |||||||||||||||| Sbjct: 1806 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 1747 Query: 443 tgctttgtccatccatttcatcattctgtccaaatcttctggagacaatgaagacatagc 502 |||| ||||||||||||||||||||| |||||| | || ||||| |||||||||| || Sbjct: 1746 tgctcggtccatccatttcatcattctatccaaagcctcaggagataatgaagacaaggc 1687 Query: 503 ttgttgagctttggcagcatcctccttcgacagcttcataccaaactgctcacccatgtt 562 || |||||||||||||||||||||||||| || ||||| ||||||||||||| |||| | Sbjct: 1686 ttcttgagctttggcagcatcctccttcgtcattttcattccaaactgctcactcatgct 1627 Query: 563 tgccatcacatcaggactcatgttcttcaccatggatgcaaacatctgccgcat 616 || ||||| || ||||| |||||||||| |||||||||| |||||| |||||| Sbjct: 1626 tgacatcatctctggactgatgttcttcatcatggatgcatacatcttccgcat 1573
>dbj|AK065877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050G10, full insert sequence Length = 2254 Score = 234 bits (118), Expect = 3e-58 Identities = 250/294 (85%) Strand = Plus / Minus Query: 323 accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 382 ||||||||| |||||| | | |||||||| |||| |||||||||||| ||||| |||| Sbjct: 1866 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 1807 Query: 383 caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 442 || |||||||| |||| ||||||||||| || ||||| || |||||||||||||||| Sbjct: 1806 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 1747 Query: 443 tgctttgtccatccatttcatcattctgtccaaatcttctggagacaatgaagacatagc 502 |||| ||||||||||||||||||||| |||||| | || ||||| |||||||||| || Sbjct: 1746 tgctcggtccatccatttcatcattctatccaaagcctcaggagataatgaagacaaggc 1687 Query: 503 ttgttgagctttggcagcatcctccttcgacagcttcataccaaactgctcacccatgtt 562 || |||||||||||||||||||||||||| || ||||| ||||||||||||| |||| | Sbjct: 1686 ttcttgagctttggcagcatcctccttcgtcattttcattccaaactgctcactcatgct 1627 Query: 563 tgccatcacatcaggactcatgttcttcaccatggatgcaaacatctgccgcat 616 || ||||| || ||||| |||||||||| |||||||||| |||||| |||||| Sbjct: 1626 tgacatcatctctggactgatgttcttcatcatggatgcatacatcttccgcat 1573
>dbj|AK062039.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A01, full insert sequence Length = 1183 Score = 234 bits (118), Expect = 3e-58 Identities = 250/294 (85%) Strand = Plus / Minus Query: 323 accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 382 ||||||||| |||||| | | |||||||| |||| |||||||||||| ||||| |||| Sbjct: 813 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 754 Query: 383 caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 442 || |||||||| |||| ||||||||||| || ||||| || |||||||||||||||| Sbjct: 753 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 694 Query: 443 tgctttgtccatccatttcatcattctgtccaaatcttctggagacaatgaagacatagc 502 |||| ||||||||||||||||||||| |||||| | || ||||| |||||||||| || Sbjct: 693 tgctcggtccatccatttcatcattctatccaaagcctcaggagataatgaagacaaggc 634 Query: 503 ttgttgagctttggcagcatcctccttcgacagcttcataccaaactgctcacccatgtt 562 || |||||||||||||||||||||||||| || ||||| ||||||||||||| |||| | Sbjct: 633 ttcttgagctttggcagcatcctccttcgtcattttcattccaaactgctcactcatgct 574 Query: 563 tgccatcacatcaggactcatgttcttcaccatggatgcaaacatctgccgcat 616 || ||||| || ||||| |||||||||| |||||||||| |||||| |||||| Sbjct: 573 tgacatcatctctggactgatgttcttcatcatggatgcatacatcttccgcat 520
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 125 bits (63), Expect = 2e-25 Identities = 126/147 (85%) Strand = Plus / Plus Query: 464 cattctgtccaaatcttctggagacaatgaagacatagcttgttgagctttggcagcatc 523 |||||| |||||| | || ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 3303402 cattctatccaaagcctcaggagataatgaagacaaggcttcttgagctttggcagcatc 3303461 Query: 524 ctccttcgacagcttcataccaaactgctcacccatgtttgccatcacatcaggactcat 583 |||||||| || ||||| ||||||||||||| |||| ||| ||||| || ||||| || Sbjct: 3303462 ctccttcgtcattttcattccaaactgctcactcatgcttgacatcatctctggactgat 3303521 Query: 584 gttcttcaccatggatgcaaacatctg 610 |||||||| |||||||||| ||||||| Sbjct: 3303522 gttcttcatcatggatgcatacatctg 3303548 Score = 107 bits (54), Expect = 4e-20 Identities = 120/142 (84%) Strand = Plus / Plus Query: 323 accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 382 ||||||||| |||||| | | |||||||| |||| |||||||||||| ||||| |||| Sbjct: 3302932 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 3302991 Query: 383 caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 442 || |||||||| |||| ||||||||||| || ||||| || |||||||||||||||| Sbjct: 3302992 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 3303051 Query: 443 tgctttgtccatccatttcatc 464 |||| |||||||||||||||| Sbjct: 3303052 tgctcggtccatccatttcatc 3303073
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 125 bits (63), Expect = 2e-25 Identities = 126/147 (85%) Strand = Plus / Plus Query: 464 cattctgtccaaatcttctggagacaatgaagacatagcttgttgagctttggcagcatc 523 |||||| |||||| | || ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 113095 cattctatccaaagcctcaggagataatgaagacaaggcttcttgagctttggcagcatc 113154 Query: 524 ctccttcgacagcttcataccaaactgctcacccatgtttgccatcacatcaggactcat 583 |||||||| || ||||| ||||||||||||| |||| ||| ||||| || ||||| || Sbjct: 113155 ctccttcgtcattttcattccaaactgctcactcatgcttgacatcatctctggactgat 113214 Query: 584 gttcttcaccatggatgcaaacatctg 610 |||||||| |||||||||| ||||||| Sbjct: 113215 gttcttcatcatggatgcatacatctg 113241 Score = 107 bits (54), Expect = 4e-20 Identities = 120/142 (84%) Strand = Plus / Plus Query: 323 accgatgaatccaagccgctggaggatgaacgccaagatcagcatgacaatagctaggat 382 ||||||||| |||||| | | |||||||| |||| |||||||||||| ||||| |||| Sbjct: 112625 accgatgaacccaagctggcgaaggatgaaggccaggatcagcatgacgatagcaaggac 112684 Query: 383 caggcctttcctacctaggagccagttcttcgtcttctttgctacttctactccttgctg 442 || |||||||| |||| ||||||||||| || ||||| || |||||||||||||||| Sbjct: 112685 caatcctttcctgcctaacagccagttcttggttttcttcgcagcttctactccttgctg 112744 Query: 443 tgctttgtccatccatttcatc 464 |||| |||||||||||||||| Sbjct: 112745 tgctcggtccatccatttcatc 112766
>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131209 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 167 aaagaataaacaatggtacaaaat 190 |||||||||||||||||||||||| Sbjct: 125667 aaagaataaacaatggtacaaaat 125644
>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20, complete sequence Length = 196432 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 450 tccatccatttcatcattctgtc 472 ||||||||||||||||||||||| Sbjct: 135064 tccatccatttcatcattctgtc 135086
>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20, complete sequence Length = 166824 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 450 tccatccatttcatcattctgtc 472 ||||||||||||||||||||||| Sbjct: 86345 tccatccatttcatcattctgtc 86323
>gb|DQ232883.1| Homo sapiens tripartite motif protein 69 (TRIM69) mRNA, complete cds Length = 2435 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 2024 gtcttctttgctacttctact 2004
>gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosome 6, complete sequence Length = 201337 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 tgtccaaatcttctggagaca 489 ||||||||||||||||||||| Sbjct: 48289 tgtccaaatcttctggagaca 48269
>ref|XM_523194.1| PREDICTED: Pan troglodytes similar to Ring finger protein 36, isoform a (LOC467799), mRNA Length = 1359 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1019 gtcttctttgctacttctact 999
>gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome 6, complete sequence Length = 218138 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 469 tgtccaaatcttctggagaca 489 ||||||||||||||||||||| Sbjct: 182 tgtccaaatcttctggagaca 202
>gb|AY305385.1| Homo sapiens HSD-34 mRNA, complete cds Length = 1544 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1204 gtcttctttgctacttctact 1184
>ref|XM_535459.2| PREDICTED: Canis familiaris similar to ring finger protein 36 (predicted) (LOC478285), mRNA Length = 1685 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1299 gtcttctttgctacttctact 1279
>gb|BC047945.1| Homo sapiens ring finger protein 36, transcript variant a, mRNA (cDNA clone MGC:50818 IMAGE:5744224), complete cds Length = 1765 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1343 gtcttctttgctacttctact 1323
>gb|BC033314.1| Homo sapiens ring finger protein 36, transcript variant b, mRNA (cDNA clone MGC:35082 IMAGE:5166812), complete cds Length = 1249 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 825 gtcttctttgctacttctact 805
>gb|AC087828.6| Homo sapiens chromosome 15, clone RP11-292P13, complete sequence Length = 185324 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 76650 gtcttctttgctacttctact 76630
>gb|BC024199.1| Homo sapiens ring finger protein 36, mRNA (cDNA clone IMAGE:4822946), partial cds Length = 1670 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1324 gtcttctttgctacttctact 1304
>gb|AC157607.4| Mus musculus chromosome 1, clone RP23-401G11, complete sequence Length = 200421 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 aataaacaatggtacaaaatg 191 ||||||||||||||||||||| Sbjct: 61339 aataaacaatggtacaaaatg 61359
>gb|AC122108.2| Homo sapiens chromosome 15 clone CTD-2008A1 map 15q21.1, complete sequence Length = 141944 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 60329 gtcttctttgctacttctact 60309
>gb|AF302089.1|AF302089 Homo sapiens TRIMLESS beta (TRIMLESS) mRNA, complete cds Length = 1231 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 834 gtcttctttgctacttctact 814
>gb|AF302088.1|AF302088 Homo sapiens TRIMLESS alpha (TRIMLESS) mRNA, complete cds Length = 1282 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 885 gtcttctttgctacttctact 865
>ref|NM_080745.3| Homo sapiens ring finger protein 36 (RNF36), transcript variant b, mRNA Length = 1434 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1029 gtcttctttgctacttctact 1009
>ref|NM_182985.3| Homo sapiens ring finger protein 36 (RNF36), transcript variant a, mRNA Length = 1911 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1506 gtcttctttgctacttctact 1486
>gb|AC091245.2| Homo sapiens chromosome 15 clone RP11-456H13 map 15q15, complete sequence Length = 194311 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 32733 gtcttctttgctacttctact 32713
>dbj|AB168995.1| Macaca fascicularis testis cDNA, clone: QtsA-16427, similar to human ring finger protein 36 (RNF36), transcript variant a,mRNA, RefSeq: NM_182985.2 Length = 1699 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 1177 gtcttctttgctacttctact 1157
>gb|AC018901.8| Homo sapiens chromosome 15 clone RP11-292P13 map 15q15, complete sequence Length = 199503 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 90803 gtcttctttgctacttctact 90783
>emb|AL360161.1|HST000218 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1621663 Length = 1200 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtcttctttgctacttctact 434 ||||||||||||||||||||| Sbjct: 872 gtcttctttgctacttctact 852
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence Length = 252334 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tcagcatgacaatagctagg 380 |||||||||||||||||||| Sbjct: 54126 tcagcatgacaatagctagg 54145
>gb|AE006899.1| Sulfolobus solfataricus P2 section 258 of 272 of the complete genome Length = 10222 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 catgttcttcaccatggatg 600 |||||||||||||||||||| Sbjct: 6393 catgttcttcaccatggatg 6374
>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence Length = 274518 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tcagcatgacaatagctagg 380 |||||||||||||||||||| Sbjct: 2874 tcagcatgacaatagctagg 2855
>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence Length = 187246 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tcagcatgacaatagctagg 380 |||||||||||||||||||| Sbjct: 12179 tcagcatgacaatagctagg 12160
>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence Length = 107889 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cagcctagtgtccaaatgac 115 |||||||||||||||||||| Sbjct: 101920 cagcctagtgtccaaatgac 101939
>emb|Z79640.1|CICOS2 Ciona intestinalis DNA sequence from cosmid COS2 Length = 38546 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gactcttcccacagtgcttccaca 220 |||||||| ||||||||||||||| Sbjct: 30578 gactcttcacacagtgcttccaca 30555
>gb|AF186191.6| Homo sapiens chromosome 8 clone CTC-259J15 map 8q24.3, complete sequence Length = 104637 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gagacaatgaagacatagct 503 |||||||||||||||||||| Sbjct: 93394 gagacaatgaagacatagct 93413
>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence Length = 135880 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 tcaccatggatgcaaacatc 608 |||||||||||||||||||| Sbjct: 135605 tcaccatggatgcaaacatc 135624
>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence Length = 189207 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 gagacaatgaagacatagct 503 |||||||||||||||||||| Sbjct: 178602 gagacaatgaagacatagct 178583
>emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 in linkage group 12, complete sequence Length = 249826 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 caaaatgttcttgactcttc 204 |||||||||||||||||||| Sbjct: 165096 caaaatgttcttgactcttc 165077 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 caaaatgttcttgactcttc 204 |||||||||||||||||||| Sbjct: 164217 caaaatgttcttgactcttc 164198 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 caaaatgttcttgactcttc 204 |||||||||||||||||||| Sbjct: 163736 caaaatgttcttgactcttc 163717
>gb|AC155642.6| Mus musculus 10 BAC RP24-117F24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195095 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 cttctggagacaatgaagacatag 501 ||||||||||| |||||||||||| Sbjct: 61760 cttctggagaccatgaagacatag 61783
>gb|AF155238.4| Homo sapiens chromosome 8 clone GS1-180I23 map 8q24.3, complete sequence Length = 104923 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gagacaatgaagacatagct 503 |||||||||||||||||||| Sbjct: 52765 gagacaatgaagacatagct 52784
>emb|BX890616.5| Zebrafish DNA sequence from clone DKEY-159A18 in linkage group 4, complete sequence Length = 74749 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aataatctgttacaatttac 156 |||||||||||||||||||| Sbjct: 35606 aataatctgttacaatttac 35625
>emb|AL954768.7| Zebrafish DNA sequence from clone CH211-254L23 in linkage group 12, complete sequence Length = 159442 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 caaaatgttcttgactcttc 204 |||||||||||||||||||| Sbjct: 48464 caaaatgttcttgactcttc 48483 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 caaaatgttcttgactcttc 204 |||||||||||||||||||| Sbjct: 48131 caaaatgttcttgactcttc 48150
>gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosome 16, complete sequence Length = 198814 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ttcttcgtcttctttgctac 427 |||||||||||||||||||| Sbjct: 39492 ttcttcgtcttctttgctac 39511
>emb|BX005136.8| Mouse DNA sequence from clone RP23-449C14 on chromosome 2, complete sequence Length = 178200 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 tggagacaatgaagacatag 501 |||||||||||||||||||| Sbjct: 169706 tggagacaatgaagacatag 169725
>emb|AL031770.12|HS20B11 Human DNA sequence from clone RP1-20B11 on chromosome 6p25.1-25.3, complete sequence Length = 140385 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 aaattctttggtgcaaaataacat 72 ||||||||||||||| |||||||| Sbjct: 100739 aaattctttggtgcataataacat 100716
>gb|AC117775.8| Mus musculus chromosome 16, clone RP24-535F23, complete sequence Length = 127815 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ttcttcgtcttctttgctac 427 |||||||||||||||||||| Sbjct: 71685 ttcttcgtcttctttgctac 71666
>emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on chromosome 16, complete sequence Length = 187418 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ttcttcgtcttctttgctac 427 |||||||||||||||||||| Sbjct: 18555 ttcttcgtcttctttgctac 18536 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,485,092 Number of Sequences: 3902068 Number of extensions: 5485092 Number of successful extensions: 104949 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104814 Number of HSP's gapped (non-prelim): 135 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
